Wall clock time and date at job start Fri Apr 10 2020 21:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47034 * 2 1 4 4 H 1.08997 * 109.47320 * 308.18801 * 3 2 1 5 5 C 1.50707 * 109.47215 * 188.19285 * 3 2 1 6 6 H 1.07996 * 119.99995 * 239.99967 * 5 3 2 7 7 C 1.37877 * 119.99803 * 60.00159 * 5 3 2 8 8 N 1.31517 * 120.00266 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99756 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47080 * 90.00238 * 9 7 5 11 11 H 1.48502 * 109.46988 * 209.99964 * 9 7 5 12 12 H 1.48496 * 109.47118 * 330.00116 * 9 7 5 13 13 N 1.46495 * 109.47085 * 68.19412 * 3 2 1 14 14 C 1.34773 * 120.00140 * 273.40992 * 13 3 2 15 15 O 1.21288 * 119.99805 * 356.67142 * 14 13 3 16 16 C 1.50702 * 120.00389 * 176.66975 * 14 13 3 17 17 H 1.09001 * 109.47132 * 57.49662 * 16 14 13 18 18 O 1.42899 * 109.47503 * 177.49751 * 16 14 13 19 19 C 1.53002 * 109.47201 * 297.50049 * 16 14 13 20 20 H 1.09002 * 109.47355 * 53.96586 * 19 16 14 21 21 C 1.53008 * 109.46718 * 293.97390 * 19 16 14 22 22 C 1.50691 * 109.47192 * 173.97703 * 19 16 14 23 23 C 1.38231 * 120.00452 * 59.72343 * 22 19 16 24 24 C 1.38237 * 120.00010 * 179.76913 * 23 22 19 25 25 C 1.38239 * 120.00136 * 0.50271 * 24 23 22 26 26 C 1.50692 * 119.99949 * 179.72414 * 25 24 23 27 27 C 1.38228 * 119.99732 * 359.74919 * 25 24 23 28 28 C 1.38238 * 120.00160 * 359.97438 * 27 25 24 29 29 H 1.09000 * 109.47088 * 295.66625 * 1 2 3 30 30 H 1.09002 * 109.46856 * 175.66442 * 1 2 3 31 31 H 1.09000 * 109.47351 * 55.67313 * 1 2 3 32 32 H 1.09000 * 109.47505 * 120.00132 * 2 1 3 33 33 H 1.09004 * 109.47424 * 240.00251 * 2 1 3 34 34 H 0.97000 * 119.99712 * 179.97438 * 8 7 5 35 35 H 0.97007 * 119.99849 * 93.41006 * 13 3 2 36 36 H 0.96698 * 113.99916 * 59.99127 * 18 16 14 37 37 H 1.08993 * 109.47230 * 66.47695 * 21 19 16 38 38 H 1.09003 * 109.46950 * 186.47455 * 21 19 16 39 39 H 1.08998 * 109.46644 * 306.47516 * 21 19 16 40 40 H 1.08003 * 120.00257 * 359.97438 * 23 22 19 41 41 H 1.08007 * 120.00049 * 180.22880 * 24 23 22 42 42 H 1.08996 * 109.47457 * 270.02057 * 26 25 24 43 43 H 1.09002 * 109.47282 * 30.02805 * 26 25 24 44 44 H 1.09000 * 109.47080 * 150.02009 * 26 25 24 45 45 H 1.08006 * 120.00055 * 179.97438 * 27 25 24 46 46 H 1.08002 * 120.00095 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5620 1.9968 -0.8077 5 6 3.5333 1.4474 -0.2025 6 1 4.1787 1.8778 0.5489 7 6 4.0756 0.9024 -1.3470 8 7 3.2897 0.3779 -2.2618 9 14 5.9266 0.9091 -1.5983 10 1 6.5078 -0.3334 -1.0295 11 1 6.2287 0.9771 -3.0507 12 1 6.5147 2.0888 -0.9146 13 7 1.7190 2.0739 1.2823 14 6 0.5215 2.6661 1.4609 15 8 -0.2668 2.7294 0.5414 16 6 0.1621 3.2495 2.8031 17 1 0.9062 3.9938 3.0868 18 8 -1.1240 3.8676 2.7249 19 6 0.1297 2.1355 3.8514 20 1 1.0758 1.5945 3.8360 21 6 -1.0147 1.1705 3.5347 22 6 -0.0834 2.7365 5.2167 23 6 -1.2207 3.4783 5.4757 24 6 -1.4184 4.0256 6.7296 25 6 -0.4737 3.8399 7.7216 26 6 -0.6862 4.4418 9.0866 27 6 0.6662 3.1026 7.4611 28 6 0.8611 2.5504 6.2089 29 1 -0.3633 0.4451 0.9263 30 1 -0.3633 -1.0248 -0.0777 31 1 -0.3634 0.5795 -0.8487 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.6712 -0.0052 -3.0672 35 1 2.3683 2.0658 2.0030 36 1 -1.8365 3.2629 2.4765 37 1 -0.8033 0.6502 2.6007 38 1 -1.1111 0.4439 4.3416 39 1 -1.9450 1.7300 3.4365 40 1 -1.9566 3.6275 4.6993 41 1 -2.3088 4.6021 6.9330 42 1 -0.2533 5.4417 9.1143 43 1 -1.7545 4.5024 9.2947 44 1 -0.2046 3.8165 9.8384 45 1 1.4045 2.9578 8.2360 46 1 1.7519 1.9747 6.0052 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358076122.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:34:50 Heat of formation + Delta-G solvation = -85.485729 kcal Electronic energy + Delta-G solvation = -25701.639533 eV Core-core repulsion = 22169.239014 eV Total energy + Delta-G solvation = -3532.400519 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.26472 -39.04966 -36.85930 -35.06227 -34.06298 -32.44758 -31.37220 -31.00120 -30.85698 -27.63906 -26.91536 -26.25133 -23.22800 -22.82647 -22.27521 -20.60891 -20.11052 -19.31465 -17.84286 -16.59808 -16.15938 -15.93450 -15.76116 -15.25912 -14.95183 -14.70137 -14.31159 -14.17886 -13.88180 -13.50877 -13.29199 -13.23736 -12.71301 -12.55124 -12.34787 -12.26476 -12.10352 -11.81037 -11.65730 -11.49511 -11.38735 -11.26056 -11.02638 -11.00313 -10.89613 -10.85171 -10.36296 -10.24210 -10.18240 -9.64988 -9.09683 -8.93268 -8.87817 -8.53675 -8.42755 -7.87384 -6.14496 -4.24177 1.27753 1.40061 3.22335 3.26866 3.30041 3.32030 3.70819 4.00225 4.34397 4.39130 4.65044 4.71981 4.83368 4.91525 5.02975 5.03947 5.16935 5.21547 5.31435 5.39033 5.43130 5.51332 5.62092 5.68371 5.74112 5.79870 5.90325 6.04657 6.05890 6.14372 6.32824 6.39712 6.45766 6.54806 6.60210 6.65433 6.98133 6.99845 7.14699 7.31596 7.39855 7.54931 7.62565 7.71375 7.88107 8.15243 8.61426 8.74859 9.06787 9.43226 10.90545 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.020803 B = 0.003404 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.657691 B = 8222.822072 C = 8933.394449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.705 5.705 14 C 0.476 3.524 15 O -0.542 6.542 16 C 0.097 3.903 17 H 0.117 0.883 18 O -0.537 6.537 19 C -0.078 4.078 20 H 0.092 0.908 21 C -0.155 4.155 22 C -0.078 4.078 23 C -0.095 4.095 24 C -0.125 4.125 25 C -0.094 4.094 26 C -0.113 4.113 27 C -0.125 4.125 28 C -0.112 4.112 29 H 0.038 0.962 30 H 0.025 0.975 31 H 0.050 0.950 32 H 0.030 0.970 33 H 0.100 0.900 34 H 0.264 0.736 35 H 0.387 0.613 36 H 0.377 0.623 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.132 0.868 41 H 0.118 0.882 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.118 0.882 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.132 3.339 18.961 20.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.354 5.354 14 C 0.260 3.740 15 O -0.420 6.420 16 C 0.034 3.966 17 H 0.135 0.865 18 O -0.342 6.342 19 C -0.097 4.097 20 H 0.111 0.889 21 C -0.212 4.212 22 C -0.078 4.078 23 C -0.113 4.113 24 C -0.143 4.143 25 C -0.094 4.094 26 C -0.170 4.170 27 C -0.143 4.143 28 C -0.130 4.130 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.220 0.780 36 H 0.227 0.773 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.150 0.850 41 H 0.136 0.864 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.136 0.864 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.362 3.802 18.255 20.048 hybrid contribution 1.166 -0.567 0.004 1.297 sum -6.196 3.235 18.259 19.551 Atomic orbital electron populations 1.21885 0.98547 0.98405 1.00904 1.21930 0.92543 0.99852 1.02281 1.18808 0.94943 0.89404 0.80136 0.93156 1.21241 0.91047 1.39880 1.05098 0.92119 1.24886 0.98410 0.94816 0.95565 1.69891 1.34717 1.38374 1.08961 0.86468 0.84864 0.78433 0.77467 1.20555 1.21078 1.19858 1.46532 1.15087 1.55498 1.18238 1.21133 0.83346 0.79254 0.90276 1.90682 1.50138 1.58467 1.42748 1.21909 0.87470 0.95435 0.91749 0.86546 1.86545 1.16339 1.40091 1.91273 1.20769 1.01402 0.95951 0.91541 0.88936 1.21970 0.97402 0.98970 1.02811 1.19706 0.94995 0.98475 0.94653 1.21239 0.97565 0.96013 0.96462 1.21037 0.99179 1.00803 0.93266 1.19902 0.94947 0.98531 0.96066 1.20770 1.02181 1.00629 0.93383 1.20952 0.97369 0.98917 0.97024 1.21091 0.98923 0.99968 0.93034 0.94309 0.95617 0.93058 0.95076 0.88183 0.92557 0.78031 0.77318 0.90921 0.91853 0.92278 0.84988 0.86398 0.91363 0.91753 0.91783 0.86376 0.86026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.56 37.15 0.32 -2.64 16 2 C -0.13 -2.96 5.46 -26.73 -0.15 -3.11 16 3 C 0.27 6.54 2.21 -69.08 -0.15 6.39 16 4 H 0.05 1.45 7.47 -51.93 -0.39 1.06 16 5 C -0.53 -13.81 8.73 -34.44 -0.30 -14.11 16 6 H 0.06 1.51 7.75 -52.49 -0.41 1.10 16 7 C 0.07 1.76 5.28 -17.82 -0.09 1.66 16 8 N -0.88 -24.38 11.29 55.43 0.63 -23.75 16 9 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 13 N -0.70 -13.82 4.86 -54.93 -0.27 -14.09 16 14 C 0.48 8.91 5.05 -10.99 -0.06 8.85 16 15 O -0.54 -12.15 13.92 -14.35 -0.20 -12.35 16 16 C 0.10 1.41 3.09 -27.88 -0.09 1.32 16 17 H 0.12 1.62 8.14 -51.93 -0.42 1.20 16 18 O -0.54 -7.77 10.32 -55.13 -0.57 -8.34 16 19 C -0.08 -0.94 2.44 -91.77 -0.22 -1.17 16 20 H 0.09 1.10 7.38 -51.93 -0.38 0.71 16 21 C -0.15 -1.85 8.38 37.16 0.31 -1.54 16 22 C -0.08 -0.91 4.78 -104.63 -0.50 -1.41 16 23 C -0.09 -1.09 8.52 -39.58 -0.34 -1.43 16 24 C -0.12 -1.31 9.70 -39.58 -0.38 -1.70 16 25 C -0.09 -0.95 5.88 -104.63 -0.62 -1.56 16 26 C -0.11 -0.83 10.01 36.00 0.36 -0.47 16 27 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 28 C -0.11 -1.22 9.67 -39.58 -0.38 -1.61 16 29 H 0.04 0.76 3.76 -51.93 -0.20 0.56 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 1.18 7.90 -51.93 -0.41 0.77 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 2.62 5.89 -51.93 -0.31 2.31 16 34 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.39 6.60 8.20 -40.82 -0.33 6.26 16 36 H 0.38 4.85 6.78 45.56 0.31 5.16 16 37 H 0.07 1.02 5.22 -51.93 -0.27 0.75 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.64 5.86 -51.93 -0.30 0.33 16 40 H 0.13 1.47 5.86 -52.48 -0.31 1.16 16 41 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 44 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 45 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 46 H 0.12 1.16 7.95 -52.49 -0.42 0.74 16 LS Contribution 360.03 15.07 5.43 5.43 Total: -1.00 -30.01 360.03 -9.03 -39.03 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -6.35 Total: 12.87 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -2.67 Total: -14.17 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.36 Total: -37.84 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.77 Total: -20.69 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.01 -9.03 -39.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358076122.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.453 kcal (2) G-P(sol) polarization free energy of solvation -30.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds