Wall clock time and date at job start Fri Apr 10 2020 21:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47034 * 2 1 4 4 H 1.08997 * 109.47320 * 308.18801 * 3 2 1 5 5 C 1.50707 * 109.47215 * 188.19285 * 3 2 1 6 6 H 1.07996 * 119.99995 * 239.99967 * 5 3 2 7 7 C 1.37877 * 119.99803 * 60.00159 * 5 3 2 8 8 N 1.31517 * 120.00266 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99756 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47080 * 90.00238 * 9 7 5 11 11 H 1.48502 * 109.46988 * 209.99964 * 9 7 5 12 12 H 1.48496 * 109.47118 * 330.00116 * 9 7 5 13 13 N 1.46495 * 109.47085 * 68.19412 * 3 2 1 14 14 C 1.34773 * 120.00140 * 273.40992 * 13 3 2 15 15 O 1.21288 * 119.99805 * 356.67142 * 14 13 3 16 16 C 1.50702 * 120.00389 * 176.66975 * 14 13 3 17 17 H 1.09001 * 109.47132 * 57.49662 * 16 14 13 18 18 O 1.42899 * 109.47503 * 177.49751 * 16 14 13 19 19 C 1.53002 * 109.47201 * 297.50049 * 16 14 13 20 20 H 1.09002 * 109.47355 * 53.96586 * 19 16 14 21 21 C 1.53008 * 109.46718 * 293.97390 * 19 16 14 22 22 C 1.50691 * 109.47192 * 173.97703 * 19 16 14 23 23 C 1.38231 * 120.00452 * 59.72343 * 22 19 16 24 24 C 1.38237 * 120.00010 * 179.76913 * 23 22 19 25 25 C 1.38239 * 120.00136 * 0.50271 * 24 23 22 26 26 C 1.50692 * 119.99949 * 179.72414 * 25 24 23 27 27 C 1.38228 * 119.99732 * 359.74919 * 25 24 23 28 28 C 1.38238 * 120.00160 * 359.97438 * 27 25 24 29 29 H 1.09000 * 109.47088 * 295.66625 * 1 2 3 30 30 H 1.09002 * 109.46856 * 175.66442 * 1 2 3 31 31 H 1.09000 * 109.47351 * 55.67313 * 1 2 3 32 32 H 1.09000 * 109.47505 * 120.00132 * 2 1 3 33 33 H 1.09004 * 109.47424 * 240.00251 * 2 1 3 34 34 H 0.97000 * 119.99712 * 179.97438 * 8 7 5 35 35 H 0.97007 * 119.99849 * 93.41006 * 13 3 2 36 36 H 0.96698 * 113.99916 * 59.99127 * 18 16 14 37 37 H 1.08993 * 109.47230 * 66.47695 * 21 19 16 38 38 H 1.09003 * 109.46950 * 186.47455 * 21 19 16 39 39 H 1.08998 * 109.46644 * 306.47516 * 21 19 16 40 40 H 1.08003 * 120.00257 * 359.97438 * 23 22 19 41 41 H 1.08007 * 120.00049 * 180.22880 * 24 23 22 42 42 H 1.08996 * 109.47457 * 270.02057 * 26 25 24 43 43 H 1.09002 * 109.47282 * 30.02805 * 26 25 24 44 44 H 1.09000 * 109.47080 * 150.02009 * 26 25 24 45 45 H 1.08006 * 120.00055 * 179.97438 * 27 25 24 46 46 H 1.08002 * 120.00095 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5620 1.9968 -0.8077 5 6 3.5333 1.4474 -0.2025 6 1 4.1787 1.8778 0.5489 7 6 4.0756 0.9024 -1.3470 8 7 3.2897 0.3779 -2.2618 9 14 5.9266 0.9091 -1.5983 10 1 6.5078 -0.3334 -1.0295 11 1 6.2287 0.9771 -3.0507 12 1 6.5147 2.0888 -0.9146 13 7 1.7190 2.0739 1.2823 14 6 0.5215 2.6661 1.4609 15 8 -0.2668 2.7294 0.5414 16 6 0.1621 3.2495 2.8031 17 1 0.9062 3.9938 3.0868 18 8 -1.1240 3.8676 2.7249 19 6 0.1297 2.1355 3.8514 20 1 1.0758 1.5945 3.8360 21 6 -1.0147 1.1705 3.5347 22 6 -0.0834 2.7365 5.2167 23 6 -1.2207 3.4783 5.4757 24 6 -1.4184 4.0256 6.7296 25 6 -0.4737 3.8399 7.7216 26 6 -0.6862 4.4418 9.0866 27 6 0.6662 3.1026 7.4611 28 6 0.8611 2.5504 6.2089 29 1 -0.3633 0.4451 0.9263 30 1 -0.3633 -1.0248 -0.0777 31 1 -0.3634 0.5795 -0.8487 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.6712 -0.0052 -3.0672 35 1 2.3683 2.0658 2.0030 36 1 -1.8365 3.2629 2.4765 37 1 -0.8033 0.6502 2.6007 38 1 -1.1111 0.4439 4.3416 39 1 -1.9450 1.7300 3.4365 40 1 -1.9566 3.6275 4.6993 41 1 -2.3088 4.6021 6.9330 42 1 -0.2533 5.4417 9.1143 43 1 -1.7545 4.5024 9.2947 44 1 -0.2046 3.8165 9.8384 45 1 1.4045 2.9578 8.2360 46 1 1.7519 1.9747 6.0052 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358076122.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:34:49 Heat of formation + Delta-G solvation = -103.077308 kcal Electronic energy + Delta-G solvation = -25702.402361 eV Core-core repulsion = 22169.239014 eV Total energy + Delta-G solvation = -3533.163347 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.46747 -40.16793 -38.14045 -36.78573 -35.11378 -34.23807 -32.91301 -32.07238 -31.69733 -29.26948 -27.99901 -27.43186 -25.00849 -23.69167 -23.31714 -22.05308 -21.35300 -20.82908 -19.35901 -18.08963 -17.48151 -17.23577 -16.98964 -16.61575 -16.17130 -15.77122 -15.67948 -15.51932 -14.97829 -14.61901 -14.50546 -14.22344 -14.15187 -13.90867 -13.48177 -13.43599 -13.19733 -13.08605 -12.95562 -12.91859 -12.75813 -12.67376 -12.60267 -12.32268 -12.15361 -12.01483 -11.89167 -11.80377 -11.47234 -11.36026 -11.05434 -10.54540 -10.30174 -9.71585 -9.63388 -9.29423 -8.15606 -6.32902 0.47707 0.61059 1.44154 1.45284 1.55166 1.77764 2.34372 2.58505 2.91869 3.13706 3.26609 3.69023 3.78552 3.95090 4.09122 4.10718 4.17832 4.28086 4.37761 4.48730 4.52836 4.55129 4.64521 4.73104 4.74207 4.84713 4.87815 4.93562 4.99511 5.04331 5.09520 5.20628 5.30538 5.33144 5.37284 5.48678 5.56987 5.61923 5.62971 5.79774 5.81419 5.82495 5.93313 6.19376 6.22400 6.51288 6.75702 6.98198 7.33802 7.55593 8.89161 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.020803 B = 0.003404 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.657691 B = 8222.822072 C = 8933.394449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.003 1.003 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.266 1.266 13 N -0.700 5.700 14 C 0.475 3.525 15 O -0.582 6.582 16 C 0.112 3.888 17 H 0.127 0.873 18 O -0.541 6.541 19 C -0.066 4.066 20 H 0.098 0.902 21 C -0.152 4.152 22 C -0.089 4.089 23 C -0.107 4.107 24 C -0.135 4.135 25 C -0.099 4.099 26 C -0.112 4.112 27 C -0.132 4.132 28 C -0.120 4.120 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.022 0.978 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.264 0.736 35 H 0.403 0.597 36 H 0.384 0.616 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.137 0.863 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.430 3.542 21.757 22.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.015 0.985 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.190 1.190 13 N -0.350 5.350 14 C 0.261 3.739 15 O -0.463 6.463 16 C 0.049 3.951 17 H 0.144 0.856 18 O -0.347 6.347 19 C -0.086 4.086 20 H 0.116 0.884 21 C -0.209 4.209 22 C -0.089 4.089 23 C -0.125 4.125 24 C -0.153 4.153 25 C -0.099 4.099 26 C -0.169 4.169 27 C -0.150 4.150 28 C -0.138 4.138 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.238 0.762 36 H 0.235 0.765 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.155 0.845 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.659 4.012 21.096 22.483 hybrid contribution 0.883 -0.579 -0.827 1.341 sum -5.776 3.433 20.269 21.354 Atomic orbital electron populations 1.21750 0.97031 0.99306 1.00492 1.21758 0.93842 0.98934 1.01332 1.18369 0.94007 0.89484 0.80713 0.98516 1.21605 0.91914 1.39638 1.05448 0.91137 1.25742 1.02864 0.94476 0.95346 1.70048 1.36624 1.39198 1.09405 0.85417 0.79454 0.78858 0.77043 1.19582 1.21445 1.19027 1.46283 1.16072 1.55537 1.17103 1.21947 0.82233 0.78131 0.91543 1.90667 1.51164 1.59804 1.44636 1.21839 0.87662 0.96189 0.89385 0.85560 1.86537 1.16468 1.40599 1.91130 1.20650 1.01745 0.94965 0.91191 0.88422 1.21940 0.97800 0.99156 1.02001 1.19617 0.95642 0.99370 0.94312 1.21329 0.97644 0.96467 0.97011 1.21279 1.00005 1.00938 0.93112 1.20265 0.94562 0.97960 0.97095 1.20818 1.03024 1.00947 0.92089 1.21247 0.97899 0.98590 0.97259 1.21300 0.99132 1.00102 0.93220 0.92740 0.93540 0.95899 0.93750 0.91173 0.92670 0.76249 0.76544 0.93118 0.90616 0.91405 0.85188 0.85028 0.90694 0.90903 0.90703 0.84510 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.52 8.56 71.98 0.62 -4.91 16 2 C -0.12 -5.68 5.46 30.59 0.17 -5.51 16 3 C 0.28 13.86 2.21 44.25 0.10 13.96 16 4 H 0.00 -0.19 7.47 -2.39 -0.02 -0.20 16 5 C -0.55 -28.50 8.73 25.60 0.22 -28.28 16 6 H 0.07 3.44 7.75 -2.91 -0.02 3.42 16 7 C 0.02 0.84 5.28 84.65 0.45 1.29 16 8 N -0.91 -51.92 11.29 21.45 0.24 -51.67 16 9 Si 0.97 41.75 29.54 68.60 2.03 43.78 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 13 N -0.70 -27.47 4.86 -446.10 -2.17 -29.64 16 14 C 0.48 17.82 5.05 87.66 0.44 18.27 16 15 O -0.58 -26.77 13.92 15.97 0.22 -26.55 16 16 C 0.11 3.12 3.09 29.85 0.09 3.21 16 17 H 0.13 3.32 8.14 -2.39 -0.02 3.30 16 18 O -0.54 -15.18 10.32 -129.96 -1.34 -16.52 16 19 C -0.07 -1.51 2.44 -11.54 -0.03 -1.54 16 20 H 0.10 2.12 7.38 -2.39 -0.02 2.10 16 21 C -0.15 -3.43 8.38 71.98 0.60 -2.82 16 22 C -0.09 -1.91 4.78 -19.87 -0.09 -2.00 16 23 C -0.11 -2.27 8.52 22.27 0.19 -2.08 16 24 C -0.14 -2.58 9.70 22.27 0.22 -2.36 16 25 C -0.10 -1.73 5.88 -19.87 -0.12 -1.85 16 26 C -0.11 -1.33 10.01 71.23 0.71 -0.61 16 27 C -0.13 -2.34 9.70 22.27 0.22 -2.13 16 28 C -0.12 -2.33 9.67 22.27 0.22 -2.11 16 29 H 0.05 2.14 3.76 -2.39 -0.01 2.13 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.02 1.07 7.90 -2.39 -0.02 1.05 16 32 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.07 3.79 5.89 -2.38 -0.01 3.77 16 34 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 35 H 0.40 13.31 8.20 -92.70 -0.76 12.55 16 36 H 0.38 9.64 6.78 -74.06 -0.50 9.14 16 37 H 0.05 1.37 5.22 -2.39 -0.01 1.36 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.07 1.38 5.86 -2.39 -0.01 1.37 16 40 H 0.13 2.73 5.86 -2.91 -0.02 2.71 16 41 H 0.13 2.04 8.06 -2.91 -0.02 2.01 16 42 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 44 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16 45 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 46 H 0.13 2.19 7.95 -2.91 -0.02 2.17 16 Total: -1.00 -65.91 360.03 2.72 -63.19 By element: Atomic # 1 Polarization: 37.16 SS G_CDS: -0.26 Total: 36.90 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: 4.00 Total: -19.48 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -1.93 Total: -81.31 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -1.12 Total: -43.07 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -65.91 2.72 -63.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358076122.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.886 kcal (2) G-P(sol) polarization free energy of solvation -65.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds