Wall clock time and date at job start Fri Apr 10 2020 21:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 120.00002 * 2 1 4 4 N 1.46509 * 109.46838 * 125.00547 * 3 2 1 5 5 C 1.46493 * 120.00019 * 84.44287 * 4 3 2 6 6 C 1.50701 * 109.47019 * 95.90492 * 5 4 3 7 7 H 1.07997 * 120.00120 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00337 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99712 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00371 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46735 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.46858 * 119.99805 * 10 8 6 13 13 H 1.48494 * 109.47126 * 239.99921 * 10 8 6 14 14 C 1.34780 * 119.99634 * 264.44253 * 4 3 2 15 15 O 1.21276 * 120.00270 * 5.29514 * 14 4 3 16 16 C 1.50857 * 119.99577 * 185.28874 * 14 4 3 17 17 C 1.52819 * 109.15438 * 160.14653 * 16 14 4 18 18 C 1.53409 * 109.71021 * 180.94576 * 17 16 14 19 19 H 1.09108 * 111.03010 * 119.04227 * 18 17 16 20 20 C 1.53391 * 108.91674 * 241.61793 * 18 17 16 21 21 C 1.52717 * 110.07380 * 59.40684 * 20 18 17 22 22 C 1.52709 * 111.02209 * 59.85153 * 21 20 18 23 23 C 1.53404 * 110.06545 * 300.12816 * 22 21 20 24 24 H 1.09102 * 111.05012 * 178.07663 * 23 22 21 25 25 C 1.52824 * 109.15727 * 281.40097 * 16 14 4 26 26 C 1.52082 * 107.32552 * 56.62645 * 23 22 21 27 27 O 1.20694 * 122.47973 * 121.39698 * 26 23 22 28 28 H 1.08001 * 119.99854 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.00243 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.99854 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.47470 * 5.00455 * 3 2 1 32 32 H 1.08998 * 109.46925 * 244.99908 * 3 2 1 33 33 H 1.08999 * 109.47545 * 335.90347 * 5 4 3 34 34 H 1.08999 * 109.47060 * 215.90061 * 5 4 3 35 35 H 0.96996 * 120.00270 * 179.97438 * 9 8 6 36 36 H 1.09081 * 108.93069 * 40.76989 * 16 14 4 37 37 H 1.09265 * 109.18649 * 300.65470 * 17 16 14 38 38 H 1.08903 * 109.75224 * 60.03898 * 17 16 14 39 39 H 1.09157 * 109.41528 * 179.67091 * 20 18 17 40 40 H 1.09147 * 109.45496 * 299.08680 * 20 18 17 41 41 H 1.08853 * 109.79459 * 298.26264 * 21 20 18 42 42 H 1.09440 * 108.87728 * 179.69560 * 21 20 18 43 43 H 1.09146 * 109.44733 * 179.80513 * 22 21 20 44 44 H 1.09169 * 109.41569 * 60.39057 * 22 21 20 45 45 H 1.08891 * 109.76025 * 299.93465 * 25 16 14 46 46 H 1.09283 * 109.17108 * 59.30794 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 4.3172 0.7159 1.0063 6 6 5.3292 1.7703 0.6384 7 1 5.0177 2.7964 0.5102 8 6 6.6526 1.4248 0.4644 9 7 7.0319 0.1752 0.6200 10 14 7.9069 2.7315 0.0077 11 1 7.2301 4.0483 -0.1075 12 1 8.9530 2.8024 1.0593 13 1 8.5344 2.3826 -1.2921 14 6 2.6323 1.9230 2.2874 15 8 1.5046 2.3476 2.4245 16 6 3.6303 2.0563 3.4108 17 6 3.1648 3.1533 4.3675 18 6 4.1834 3.3159 5.5031 19 1 4.6056 4.3220 5.5093 20 6 3.4957 2.9990 6.8371 21 6 2.9561 1.5704 6.8222 22 6 4.0821 0.5617 6.6061 23 6 4.7806 0.8316 5.2672 24 1 5.6105 0.1407 5.1119 25 6 3.7495 0.7170 4.1372 26 6 5.2690 2.2717 5.2934 27 8 6.4321 2.5642 5.1579 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9352 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3587 2.1316 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 4.2903 -0.0485 0.2298 34 1 4.5968 0.2596 1.9558 35 1 7.9628 -0.0680 0.4973 36 1 4.6000 2.3285 2.9922 37 1 3.0817 4.0954 3.8203 38 1 2.1896 2.8947 4.7774 39 1 4.2152 3.1066 7.6508 40 1 2.6716 3.6968 6.9961 41 1 2.2114 1.4658 6.0352 42 1 2.4752 1.3635 7.7833 43 1 3.6693 -0.4487 6.6034 44 1 4.8072 0.6479 7.4176 45 1 2.7810 0.4318 4.5450 46 1 4.0755 -0.0480 3.4282 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359381233.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:34:54 Heat of formation + Delta-G solvation = -86.017755 kcal Electronic energy + Delta-G solvation = -27011.549236 eV Core-core repulsion = 23479.125646 eV Total energy + Delta-G solvation = -3532.423589 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.31224 -40.54063 -38.27017 -37.10117 -35.37935 -34.37812 -33.87285 -33.57146 -29.48514 -29.20552 -27.24879 -26.85590 -25.13253 -23.58232 -22.82456 -22.53583 -20.85760 -19.87879 -18.81997 -18.36522 -18.07440 -17.64096 -17.22764 -16.46838 -16.40908 -15.96766 -15.81503 -15.47318 -15.26085 -14.78888 -14.68402 -14.36447 -14.24193 -14.03942 -13.93974 -13.80085 -13.42736 -13.33277 -13.11096 -12.87678 -12.81922 -12.57160 -12.25919 -12.13757 -12.07541 -11.96042 -11.88700 -11.75210 -11.58651 -11.40106 -11.18271 -10.73200 -10.60151 -10.22900 -10.11491 -9.48512 -8.26120 -6.38311 0.99546 1.29766 1.31613 1.36752 1.44241 1.72636 2.31373 2.46418 2.99499 3.04877 3.48258 3.54846 3.73261 3.92014 3.95052 4.03755 4.05816 4.12695 4.15566 4.23598 4.32534 4.48541 4.49047 4.61060 4.62693 4.74429 4.77505 4.78943 4.83035 4.92457 4.96270 5.02334 5.07155 5.11450 5.18763 5.26215 5.29154 5.33314 5.37938 5.54572 5.61642 5.68527 5.77287 5.88399 6.02158 6.51997 6.52433 6.78247 7.26702 7.37745 8.79049 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.009896 B = 0.007432 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.694766 B = 3766.764925 C = 5684.417037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.181 4.181 3 C 0.139 3.861 4 N -0.596 5.596 5 C 0.247 3.753 6 C -0.544 4.544 7 H 0.048 0.952 8 C 0.027 3.973 9 N -0.912 5.912 10 Si 0.942 3.058 11 H -0.271 1.271 12 H -0.285 1.285 13 H -0.271 1.271 14 C 0.523 3.477 15 O -0.583 6.583 16 C -0.115 4.115 17 C -0.081 4.081 18 C -0.132 4.132 19 H 0.097 0.903 20 C -0.101 4.101 21 C -0.128 4.128 22 C -0.101 4.101 23 C -0.132 4.132 24 H 0.085 0.915 25 C -0.091 4.091 26 C 0.368 3.632 27 O -0.500 6.500 28 H 0.099 0.901 29 H 0.119 0.881 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.023 0.977 34 H 0.040 0.960 35 H 0.267 0.733 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.098 0.902 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.560 0.045 10.901 15.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.200 4.200 3 C 0.016 3.984 4 N -0.325 5.325 5 C 0.127 3.873 6 C -0.583 4.583 7 H 0.066 0.934 8 C -0.174 4.174 9 N -0.551 5.551 10 Si 0.768 3.232 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.196 1.196 14 C 0.312 3.688 15 O -0.465 6.465 16 C -0.137 4.137 17 C -0.118 4.118 18 C -0.151 4.151 19 H 0.116 0.884 20 C -0.138 4.138 21 C -0.165 4.165 22 C -0.138 4.138 23 C -0.151 4.151 24 H 0.103 0.897 25 C -0.128 4.128 26 C 0.246 3.754 27 O -0.375 6.375 28 H 0.117 0.883 29 H 0.137 0.863 30 H 0.123 0.877 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.041 0.959 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.115 0.885 41 H 0.090 0.910 42 H 0.115 0.885 43 H 0.112 0.888 44 H 0.092 0.908 45 H 0.117 0.883 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.363 0.290 10.852 15.008 hybrid contribution 1.496 0.506 -1.050 1.897 sum -8.866 0.796 9.803 13.242 Atomic orbital electron populations 1.23966 0.95024 1.02752 0.98321 1.23210 0.96790 0.98072 1.01925 1.20528 0.92073 0.96403 0.89346 1.48219 1.16682 1.55282 1.12325 1.19244 0.77657 0.92665 0.97759 1.21660 0.93373 0.95030 1.48243 0.93377 1.25518 0.99885 0.97008 0.94976 1.69971 1.17848 1.17738 1.49570 0.85742 0.79429 0.79954 0.78104 1.19571 1.21139 1.19604 1.20659 0.87892 0.76421 0.83796 1.90548 1.21917 1.51729 1.82281 1.21396 0.98891 0.98725 0.94653 1.21453 0.99136 0.97119 0.94123 1.22350 0.95475 0.98746 0.98507 0.88426 1.21626 1.00779 0.98273 0.93121 1.21618 0.97730 0.93179 1.03995 1.21638 0.97931 1.01318 0.92961 1.22267 0.99487 0.94867 0.98506 0.89696 1.21619 1.00014 0.95028 0.96177 1.25731 0.88434 0.94074 0.67196 1.90363 1.23089 1.85807 1.38277 0.88318 0.86328 0.87661 0.90484 0.90497 0.95908 0.94220 0.92392 0.90455 0.92147 0.88082 0.90745 0.88463 0.91035 0.88480 0.88848 0.90811 0.88326 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.27 14.32 67.78 0.97 -3.30 16 2 C -0.18 -5.72 9.84 25.65 0.25 -5.47 16 3 C 0.14 5.13 5.85 85.63 0.50 5.63 16 4 N -0.60 -25.07 2.46 -830.29 -2.04 -27.11 16 5 C 0.25 11.86 4.87 85.63 0.42 12.28 16 6 C -0.54 -29.09 8.08 25.60 0.21 -28.88 16 7 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 8 C 0.03 1.48 5.46 84.66 0.46 1.95 16 9 N -0.91 -51.44 13.29 21.45 0.28 -51.16 16 10 Si 0.94 44.35 29.54 68.60 2.03 46.38 16 11 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 12 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 13 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 14 C 0.52 21.28 6.78 87.71 0.59 21.87 16 15 O -0.58 -24.50 15.56 -3.02 -0.05 -24.54 16 16 C -0.12 -4.25 1.40 -11.61 -0.02 -4.27 16 17 C -0.08 -2.42 4.16 30.67 0.13 -2.29 16 18 C -0.13 -3.53 3.58 -10.83 -0.04 -3.57 16 19 H 0.10 2.59 8.15 -2.33 -0.02 2.57 16 20 C -0.10 -1.82 5.24 30.63 0.16 -1.66 16 21 C -0.13 -2.13 5.30 30.40 0.16 -1.97 16 22 C -0.10 -1.98 5.24 30.63 0.16 -1.82 16 23 C -0.13 -3.89 3.59 -10.83 -0.04 -3.93 16 24 H 0.08 2.76 8.15 -2.33 -0.02 2.74 16 25 C -0.09 -2.89 4.47 30.67 0.14 -2.76 16 26 C 0.37 12.52 4.67 29.99 0.14 12.66 16 27 O -0.50 -21.64 17.96 -1.25 -0.02 -21.67 16 28 H 0.10 2.53 7.84 -2.91 -0.02 2.51 16 29 H 0.12 2.50 8.06 -2.91 -0.02 2.47 16 30 H 0.11 3.35 8.06 -2.91 -0.02 3.33 16 31 H 0.08 2.82 6.99 -2.39 -0.02 2.80 16 32 H 0.08 2.86 8.11 -2.39 -0.02 2.84 16 33 H 0.02 1.15 8.03 -2.39 -0.02 1.13 16 34 H 0.04 1.96 4.66 -2.39 -0.01 1.95 16 35 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 36 H 0.08 3.49 5.76 -2.34 -0.01 3.48 16 37 H 0.06 1.91 8.16 -2.25 -0.02 1.89 16 38 H 0.10 2.71 6.04 -2.44 -0.01 2.69 16 39 H 0.07 1.23 8.16 -2.30 -0.02 1.21 16 40 H 0.10 1.38 8.15 -2.31 -0.02 1.36 16 41 H 0.07 1.31 5.00 -2.46 -0.01 1.30 16 42 H 0.10 1.10 8.18 -2.15 -0.02 1.09 16 43 H 0.09 1.52 8.15 -2.31 -0.02 1.50 16 44 H 0.07 1.33 8.16 -2.30 -0.02 1.31 16 45 H 0.10 2.65 6.28 -2.44 -0.02 2.63 16 46 H 0.06 2.33 5.62 -2.24 -0.01 2.32 16 Total: -1.00 -65.99 354.80 5.37 -60.62 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.97 Total: 23.00 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 4.20 Total: -5.52 kcal Atomic # 7 Polarization: -76.52 SS G_CDS: -1.76 Total: -78.27 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -0.07 Total: -46.21 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -65.99 5.37 -60.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359381233.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.396 kcal (2) G-P(sol) polarization free energy of solvation -65.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds