Wall clock time and date at job start Fri Apr 10 2020 21:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47331 * 2 1 4 4 H 1.08996 * 109.47283 * 305.00882 * 3 2 1 5 5 N 1.46501 * 109.46712 * 65.00931 * 3 2 1 6 6 C 1.34785 * 119.99589 * 274.99683 * 5 3 2 7 7 O 1.21588 * 119.99977 * 0.02562 * 6 5 3 8 8 C 1.47639 * 119.99935 * 180.02562 * 6 5 3 9 9 C 1.40015 * 119.89569 * 359.72696 * 8 6 5 10 10 C 1.36321 * 120.10899 * 179.71768 * 9 8 6 11 11 C 1.40889 * 119.88726 * 0.57835 * 10 9 8 12 12 C 1.41111 * 120.10262 * 179.67693 * 11 10 9 13 13 H 1.07996 * 119.99788 * 204.65173 * 12 11 10 14 14 C 1.40221 * 120.00040 * 24.64704 * 12 11 10 15 15 N 1.30648 * 120.00264 * 17.86955 * 14 12 11 16 16 Si 1.86804 * 120.00237 * 197.86639 * 14 12 11 17 17 H 1.48494 * 109.46967 * 90.00070 * 16 14 12 18 18 H 1.48497 * 109.47089 * 210.00464 * 16 14 12 19 19 H 1.48507 * 109.46827 * 330.00377 * 16 14 12 20 20 C 1.40892 * 119.79542 * 359.69569 * 11 10 9 21 21 C 1.36315 * 119.89074 * 359.97438 * 20 11 10 22 22 C 1.53000 * 109.47117 * 184.99936 * 3 2 1 23 23 H 1.09007 * 109.46964 * 184.99970 * 22 3 2 24 24 O 1.42896 * 109.47544 * 305.00627 * 22 3 2 25 25 C 1.53009 * 109.46854 * 65.00642 * 22 3 2 26 26 C 1.53001 * 109.46883 * 59.99415 * 25 22 3 27 27 C 1.52995 * 109.46979 * 179.97438 * 25 22 3 28 28 H 1.09008 * 109.46693 * 299.99295 * 1 2 3 29 29 H 1.09001 * 109.47680 * 59.99260 * 1 2 3 30 30 H 1.09001 * 109.47442 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46693 * 240.00705 * 2 1 3 32 32 H 1.09000 * 109.47460 * 120.01241 * 2 1 3 33 33 H 0.96994 * 120.00312 * 94.99630 * 5 3 2 34 34 H 1.08004 * 119.94657 * 359.97438 * 9 8 6 35 35 H 1.07995 * 120.05671 * 180.25130 * 10 9 8 36 36 H 0.96995 * 120.00537 * 179.97438 * 15 14 12 37 37 H 1.07996 * 120.05268 * 179.97438 * 20 11 10 38 38 H 1.08002 * 119.94926 * 180.02562 * 21 20 11 39 39 H 0.96705 * 114.00041 * 60.00011 * 24 22 3 40 40 H 1.08994 * 109.46794 * 299.99779 * 25 22 3 41 41 H 1.08992 * 109.47803 * 300.00348 * 26 25 22 42 42 H 1.09003 * 109.46911 * 60.00501 * 26 25 22 43 43 H 1.08997 * 109.46905 * 179.97438 * 26 25 22 44 44 H 1.09000 * 109.46949 * 60.00327 * 27 25 22 45 45 H 1.09003 * 109.46788 * 179.97438 * 27 25 22 46 46 H 1.09003 * 109.47496 * 299.99916 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 7 1.6526 2.0973 1.2519 6 6 0.4353 2.6643 1.3672 7 8 -0.3415 2.6318 0.4323 8 6 0.0450 3.3247 2.6286 9 6 0.9390 3.3558 3.7058 10 6 0.5854 3.9694 4.8705 11 6 -0.6867 4.5623 4.9936 12 6 -1.0601 5.1928 6.1995 13 1 -2.1044 5.2898 6.4573 14 6 -0.0753 5.6932 7.0632 15 7 1.1372 5.8987 6.6222 16 14 -0.4969 6.0663 8.8444 17 1 -0.2573 4.8577 9.6733 18 1 0.3570 7.1788 9.3326 19 1 -1.9257 6.4589 8.9430 20 6 -1.5851 4.5235 3.9089 21 6 -1.2199 3.9134 2.7459 22 6 3.5649 1.4442 -0.1257 23 1 3.9356 2.4654 -0.0366 24 8 4.1294 0.6402 0.9120 25 6 3.9649 0.8735 -1.4879 26 6 3.3604 1.7344 -2.5989 27 6 5.4897 0.8759 -1.6138 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5140 0.8898 33 1 2.2721 2.1229 1.9978 34 1 1.9121 2.8965 3.6122 35 1 1.2772 3.9965 5.6994 36 1 1.8184 6.2452 7.2195 37 1 -2.5614 4.9763 3.9988 38 1 -1.9077 3.8835 1.9137 39 1 3.8427 -0.2832 0.8941 40 1 3.5942 -0.1475 -1.5770 41 1 2.2742 1.7332 -2.5093 42 1 3.7312 2.7556 -2.5097 43 1 3.6458 1.3281 -3.5692 44 1 5.9206 0.2628 -0.8223 45 1 5.7747 0.4689 -2.5840 46 1 5.8601 1.8972 -1.5248 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412726262.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:35:00 Heat of formation + Delta-G solvation = -96.722698 kcal Electronic energy + Delta-G solvation = -25357.712113 eV Core-core repulsion = 21824.824323 eV Total energy + Delta-G solvation = -3532.887791 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.96087 -38.37562 -37.02592 -34.45548 -34.34686 -33.85106 -32.04604 -30.04757 -29.42509 -28.19726 -27.05183 -25.78540 -23.79527 -22.44209 -21.30519 -20.87629 -19.87541 -19.47942 -17.51488 -17.19241 -16.52833 -15.90885 -15.56803 -15.38219 -15.04497 -14.46432 -14.02226 -13.91088 -13.74935 -13.19219 -13.11187 -12.95832 -12.68399 -12.52311 -12.31717 -12.20023 -12.05383 -11.88981 -11.85700 -11.50992 -11.38433 -11.28620 -11.24213 -11.04523 -10.93425 -10.68047 -10.58728 -10.45678 -10.01404 -9.92471 -9.53933 -9.33600 -8.89274 -8.48036 -7.70086 -7.52514 -7.02015 -4.58893 2.25529 2.92729 2.96665 2.98894 3.05495 3.71430 3.74998 3.88769 4.27861 4.52186 4.60469 4.68009 4.73511 5.02882 5.10219 5.21860 5.33659 5.44852 5.51333 5.59329 5.63096 5.67079 5.74846 5.77703 5.88470 5.95573 6.08592 6.08659 6.11497 6.15005 6.22677 6.33215 6.37244 6.68437 6.78826 6.84332 6.99610 7.10200 7.15529 7.45391 7.50257 7.67994 7.82047 7.87918 8.08895 8.30731 8.41852 8.64747 8.77144 9.12899 9.89999 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.022212 B = 0.003132 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.258284 B = 8937.996148 C = 9655.565575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.139 4.139 3 C 0.114 3.886 4 H 0.095 0.905 5 N -0.732 5.732 6 C 0.572 3.428 7 O -0.572 6.572 8 C -0.285 4.285 9 C -0.062 4.062 10 C -0.178 4.178 11 C 0.129 3.871 12 C -0.444 4.444 13 H 0.084 0.916 14 C 0.074 3.926 15 N -0.771 5.771 16 Si 0.914 3.086 17 H -0.265 1.265 18 H -0.275 1.275 19 H -0.259 1.259 20 C -0.240 4.240 21 C -0.022 4.022 22 C 0.103 3.897 23 H 0.104 0.896 24 O -0.556 6.556 25 C -0.125 4.125 26 C -0.153 4.153 27 C -0.142 4.142 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.400 0.600 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.286 0.714 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.372 0.628 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.220 -8.946 -9.617 14.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.177 4.177 3 C 0.008 3.992 4 H 0.113 0.887 5 N -0.385 5.385 6 C 0.368 3.632 7 O -0.454 6.454 8 C -0.289 4.289 9 C -0.082 4.082 10 C -0.198 4.198 11 C 0.126 3.874 12 C -0.471 4.471 13 H 0.103 0.897 14 C -0.147 4.147 15 N -0.395 5.395 16 Si 0.737 3.263 17 H -0.189 1.189 18 H -0.200 1.200 19 H -0.183 1.183 20 C -0.260 4.260 21 C -0.041 4.041 22 C 0.043 3.957 23 H 0.121 0.879 24 O -0.362 6.362 25 C -0.144 4.144 26 C -0.210 4.210 27 C -0.200 4.200 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.236 0.764 34 H 0.107 0.893 35 H 0.138 0.862 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.220 0.780 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.204 -8.293 -10.055 14.892 hybrid contribution -0.007 -0.229 0.968 0.995 sum 7.197 -8.521 -9.086 14.387 Atomic orbital electron populations 1.21762 0.94354 1.00024 1.03795 1.22004 0.98003 0.96435 1.01270 1.21620 0.94213 0.93794 0.89535 0.88723 1.45887 1.17709 1.59176 1.15730 1.18529 0.80220 0.76484 0.88017 1.90630 1.51771 1.61710 1.41312 1.18923 0.98437 1.16948 0.94613 1.20506 0.96258 0.97710 0.93681 1.20977 0.98829 1.02315 0.97639 1.17786 0.91188 0.87115 0.91360 1.19851 0.94666 1.30680 1.01943 0.89742 1.26095 0.94313 0.93126 1.01158 1.69744 1.03339 1.29176 1.37207 0.86211 0.80045 0.78938 0.81083 1.18940 1.20028 1.18302 1.20713 1.01102 1.09956 0.94182 1.20350 0.93919 0.93537 0.96329 1.22314 0.91293 0.95701 0.86391 0.87868 1.86588 1.72142 1.24794 1.52655 1.21809 0.96892 1.00469 0.95230 1.21901 1.01396 0.99932 0.97766 1.21755 0.94529 1.02225 1.01451 0.91550 0.92371 0.94156 0.91649 0.91983 0.76381 0.89268 0.86246 0.90239 0.88470 0.88184 0.78009 0.90562 0.91810 0.92349 0.92429 0.92025 0.92888 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.51 37.16 0.32 -1.77 16 2 C -0.14 -1.65 4.89 -26.73 -0.13 -1.78 16 3 C 0.11 1.51 1.91 -67.93 -0.13 1.38 16 4 H 0.09 1.40 5.61 -51.93 -0.29 1.11 16 5 N -0.73 -12.05 4.96 -54.81 -0.27 -12.32 16 6 C 0.57 11.78 6.33 -12.42 -0.08 11.70 16 7 O -0.57 -12.76 13.45 5.29 0.07 -12.69 16 8 C -0.28 -6.48 5.89 -104.73 -0.62 -7.10 16 9 C -0.06 -1.40 9.47 -39.61 -0.38 -1.77 16 10 C -0.18 -4.41 8.64 -39.27 -0.34 -4.75 16 11 C 0.13 3.30 5.58 -106.80 -0.60 2.70 16 12 C -0.44 -11.11 9.04 -37.75 -0.34 -11.45 16 13 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 14 C 0.07 1.74 5.14 -17.31 -0.09 1.66 16 15 N -0.77 -18.63 10.95 55.56 0.61 -18.02 16 16 Si 0.91 17.39 29.60 -169.99 -5.03 12.36 16 17 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 18 H -0.28 -5.13 7.11 56.52 0.40 -4.73 16 19 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 20 C -0.24 -5.84 9.73 -39.27 -0.38 -6.22 16 21 C -0.02 -0.52 9.52 -39.61 -0.38 -0.90 16 22 C 0.10 1.12 2.45 -26.73 -0.07 1.06 16 23 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 24 O -0.56 -6.11 12.30 -35.23 -0.43 -6.54 16 25 C -0.12 -1.10 2.45 -90.62 -0.22 -1.32 16 26 C -0.15 -1.36 8.85 37.16 0.33 -1.03 16 27 C -0.14 -1.18 9.05 37.16 0.34 -0.84 16 28 H 0.07 1.19 5.64 -51.92 -0.29 0.90 16 29 H 0.06 0.90 7.84 -51.93 -0.41 0.50 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.63 6.34 -51.92 -0.33 0.30 16 32 H 0.06 0.69 7.00 -51.93 -0.36 0.33 16 33 H 0.40 6.38 6.38 -40.82 -0.26 6.12 16 34 H 0.09 1.74 6.37 -52.48 -0.33 1.41 16 35 H 0.12 3.00 6.16 -52.49 -0.32 2.68 16 36 H 0.29 6.22 8.29 -40.82 -0.34 5.89 16 37 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 38 H 0.10 2.27 7.63 -52.49 -0.40 1.87 16 39 H 0.37 3.09 7.31 45.56 0.33 3.42 16 40 H 0.08 0.61 6.46 -51.93 -0.34 0.28 16 41 H 0.06 0.63 6.32 -51.93 -0.33 0.30 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.53 7.68 -51.93 -0.40 0.13 16 45 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 359.91 15.07 5.42 5.42 Total: -1.00 -27.71 359.91 -8.64 -36.35 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -6.24 Total: 15.86 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -2.76 Total: -20.43 kcal Atomic # 7 Polarization: -30.68 SS G_CDS: 0.34 Total: -30.34 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.36 Total: -19.23 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.36 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -27.71 -8.64 -36.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412726262.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.373 kcal (2) G-P(sol) polarization free energy of solvation -27.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds