Wall clock time and date at job start Fri Apr 10 2020 21:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47138 * 2 1 4 4 H 1.08998 * 109.47524 * 54.99793 * 3 2 1 5 5 N 1.46500 * 109.46899 * 294.99708 * 3 2 1 6 6 C 1.34778 * 119.99733 * 104.20392 * 5 3 2 7 7 O 1.21582 * 120.00182 * 0.02562 * 6 5 3 8 8 C 1.47649 * 119.99871 * 179.97438 * 6 5 3 9 9 C 1.40010 * 119.89428 * 359.72816 * 8 6 5 10 10 C 1.36319 * 120.10594 * 179.76250 * 9 8 6 11 11 C 1.40895 * 119.88868 * 0.51031 * 10 9 8 12 12 C 1.41104 * 120.09922 * 179.72404 * 11 10 9 13 13 H 1.08007 * 119.99738 * 157.24554 * 12 11 10 14 14 C 1.40229 * 120.00231 * 337.23656 * 12 11 10 15 15 N 1.30637 * 120.00047 * 328.08847 * 14 12 11 16 16 Si 1.86797 * 119.99790 * 148.08830 * 14 12 11 17 17 H 1.48500 * 109.47468 * 94.98984 * 16 14 12 18 18 H 1.48504 * 109.47134 * 214.98868 * 16 14 12 19 19 H 1.48499 * 109.47460 * 334.98937 * 16 14 12 20 20 C 1.40886 * 119.79339 * 359.74343 * 11 10 9 21 21 C 1.36321 * 119.89480 * 359.97438 * 20 11 10 22 22 C 1.53004 * 109.47348 * 174.99879 * 3 2 1 23 23 H 1.08997 * 109.47012 * 298.19373 * 22 3 2 24 24 O 1.42901 * 109.46704 * 58.19095 * 22 3 2 25 25 C 1.52994 * 109.47287 * 178.18655 * 22 3 2 26 26 C 1.53002 * 109.46721 * 65.69151 * 25 22 3 27 27 C 1.52997 * 109.47224 * 185.68700 * 25 22 3 28 28 H 1.08996 * 109.46895 * 59.99979 * 1 2 3 29 29 H 1.08993 * 109.46755 * 300.00196 * 1 2 3 30 30 H 1.09000 * 109.46972 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47331 * 119.99527 * 2 1 3 32 32 H 1.08998 * 109.47319 * 239.99393 * 2 1 3 33 33 H 0.96998 * 120.00561 * 284.20620 * 5 3 2 34 34 H 1.08001 * 119.94755 * 0.02562 * 9 8 6 35 35 H 1.07993 * 120.05728 * 180.23458 * 10 9 8 36 36 H 0.97001 * 120.00299 * 179.97438 * 15 14 12 37 37 H 1.07998 * 120.05186 * 179.97438 * 20 11 10 38 38 H 1.07993 * 119.94819 * 179.97438 * 21 20 11 39 39 H 0.96704 * 114.00535 * 60.00303 * 24 22 3 40 40 H 1.08996 * 109.47620 * 305.69630 * 25 22 3 41 41 H 1.08997 * 109.47178 * 59.99719 * 26 25 22 42 42 H 1.09002 * 109.47140 * 179.97438 * 26 25 22 43 43 H 1.08998 * 109.47382 * 299.99839 * 26 25 22 44 44 H 1.09005 * 109.46848 * 56.52264 * 27 25 22 45 45 H 1.09002 * 109.47036 * 176.51699 * 27 25 22 46 46 H 1.08996 * 109.47339 * 296.51807 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6525 2.0974 -1.2519 6 6 0.6354 2.9816 -1.2630 7 8 0.0398 3.2361 -0.2340 8 6 0.2452 3.6421 -2.5245 9 6 0.9369 3.3525 -3.7068 10 6 0.5772 3.9562 -4.8749 11 6 -0.4857 4.8809 -4.8890 12 6 -0.8581 5.5127 -6.0945 13 1 -1.8534 5.9166 -6.2075 14 6 0.0642 5.6164 -7.1457 15 7 1.3392 5.7338 -6.8869 16 14 -0.5306 5.5867 -8.9163 17 1 -0.7055 6.9787 -9.4032 18 1 0.4698 4.8882 -9.7628 19 1 -1.8289 4.8697 -8.9904 20 6 -1.1753 5.1730 -3.6957 21 6 -0.8121 4.5600 -2.5336 22 6 3.5649 1.4444 0.1258 23 1 3.8520 0.9858 1.0720 24 8 4.1328 0.7018 -0.9551 25 6 4.0786 2.8848 0.0803 26 6 3.5847 3.6415 1.3149 27 6 5.6085 2.8803 0.0632 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 0.5138 0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 2.1278 1.8947 -2.0727 34 1 1.7542 2.6465 -3.6942 35 1 1.1089 3.7294 -5.7871 36 1 1.9773 5.8052 -7.6140 37 1 -1.9904 5.8815 -3.7016 38 1 -1.3398 4.7836 -1.6183 39 1 3.9182 1.0539 -1.8298 40 1 3.7065 3.3751 -0.8192 41 1 3.9567 3.1512 2.2145 42 1 3.9510 4.6676 1.2828 43 1 2.4948 3.6447 1.3272 44 1 5.9606 2.2890 -0.7821 45 1 5.9738 3.9030 -0.0316 46 1 5.9810 2.4459 0.9908 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412726269.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:35:04 Heat of formation + Delta-G solvation = -115.850064 kcal Electronic energy + Delta-G solvation = -25692.180698 eV Core-core repulsion = 22158.463483 eV Total energy + Delta-G solvation = -3533.717215 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.25816 -39.61755 -38.58335 -35.84449 -35.69516 -35.08445 -33.45194 -31.79312 -31.31547 -29.31895 -27.86240 -27.49747 -24.85032 -23.85244 -22.83469 -21.82769 -21.56829 -20.97657 -19.37006 -18.68226 -17.76662 -17.22697 -16.75653 -16.51680 -15.86653 -15.77415 -15.69813 -15.38884 -15.04968 -14.69574 -14.57719 -14.39808 -13.99618 -13.82167 -13.69185 -13.41612 -13.25636 -13.16154 -13.04589 -12.90234 -12.67224 -12.53203 -12.46708 -12.32220 -12.17387 -11.92285 -11.84120 -11.76281 -11.41269 -11.33811 -11.00359 -10.87297 -10.61463 -9.88173 -9.56806 -9.47055 -8.92144 -6.44919 0.49762 1.15327 1.35129 1.41845 1.54813 2.11904 2.18403 2.38913 2.74575 3.35119 3.62152 3.68054 3.86319 4.01903 4.17587 4.24103 4.28852 4.30770 4.34617 4.43793 4.53529 4.64748 4.72486 4.78140 4.85049 4.90864 4.95192 4.96649 5.01612 5.04645 5.05328 5.13221 5.21347 5.24875 5.29522 5.38857 5.42562 5.44351 5.57139 5.69209 5.83174 5.92062 5.99646 6.22146 6.51179 6.69272 6.73817 6.75261 6.89825 7.53261 8.05433 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.017214 B = 0.003626 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.161011 B = 7719.421877 C = 8247.300749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C 0.109 3.891 4 H 0.086 0.914 5 N -0.715 5.715 6 C 0.580 3.420 7 O -0.599 6.599 8 C -0.302 4.302 9 C -0.045 4.045 10 C -0.210 4.210 11 C 0.105 3.895 12 C -0.481 4.481 13 H 0.085 0.915 14 C 0.053 3.947 15 N -0.778 5.778 16 Si 0.976 3.024 17 H -0.259 1.259 18 H -0.259 1.259 19 H -0.258 1.258 20 C -0.260 4.260 21 C -0.029 4.029 22 C 0.116 3.884 23 H 0.121 0.879 24 O -0.558 6.558 25 C -0.127 4.127 26 C -0.146 4.146 27 C -0.136 4.136 28 H 0.028 0.972 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.401 0.599 34 H 0.124 0.876 35 H 0.101 0.899 36 H 0.301 0.699 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.379 0.621 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.052 0.948 43 H 0.039 0.961 44 H 0.061 0.939 45 H 0.050 0.950 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.875 -8.634 6.487 13.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C 0.004 3.996 4 H 0.104 0.896 5 N -0.367 5.367 6 C 0.374 3.626 7 O -0.483 6.483 8 C -0.306 4.306 9 C -0.064 4.064 10 C -0.229 4.229 11 C 0.102 3.898 12 C -0.507 4.507 13 H 0.103 0.897 14 C -0.170 4.170 15 N -0.400 5.400 16 Si 0.795 3.205 17 H -0.183 1.183 18 H -0.183 1.183 19 H -0.182 1.182 20 C -0.280 4.280 21 C -0.048 4.048 22 C 0.057 3.943 23 H 0.138 0.862 24 O -0.364 6.364 25 C -0.146 4.146 26 C -0.203 4.203 27 C -0.193 4.193 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.238 0.762 34 H 0.142 0.858 35 H 0.119 0.881 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.227 0.773 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.981 -8.785 7.634 14.112 hybrid contribution -0.590 0.857 -1.518 1.840 sum 7.391 -7.929 6.116 12.445 Atomic orbital electron populations 1.21663 0.96701 1.01160 1.00609 1.21775 0.95113 0.95319 1.03653 1.21846 0.95862 0.93886 0.88019 0.89560 1.45620 1.35303 1.44068 1.11719 1.18202 0.78826 0.77712 0.87849 1.90610 1.55920 1.66265 1.35535 1.19158 1.06737 1.11228 0.93470 1.20656 0.96894 0.97178 0.91697 1.20758 1.02818 1.01868 0.97475 1.18025 0.90284 0.89323 0.92199 1.20056 0.99871 1.32730 0.98063 0.89710 1.26866 0.93904 0.90198 1.06026 1.69808 1.04456 1.27561 1.38163 0.85291 0.79992 0.79926 0.75282 1.18338 1.18275 1.18179 1.20779 1.06836 1.07375 0.92984 1.20489 0.94406 0.93371 0.96559 1.22276 0.89148 0.91128 0.91795 0.86157 1.86556 1.76163 1.56250 1.17417 1.21740 0.97347 0.96206 0.99261 1.21791 1.00390 1.00287 0.97831 1.21699 0.93478 1.01529 1.02636 0.95256 0.93992 0.91593 0.89445 0.90700 0.76194 0.85781 0.88052 0.88765 0.88317 0.88293 0.77302 0.92376 0.90885 0.92847 0.94175 0.91948 0.93056 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.66 71.98 0.70 -3.11 16 2 C -0.12 -2.65 5.37 30.60 0.16 -2.48 16 3 C 0.11 2.67 1.85 44.99 0.08 2.75 16 4 H 0.09 2.53 5.59 -2.39 -0.01 2.52 16 5 N -0.71 -20.66 3.56 -445.58 -1.59 -22.25 16 6 C 0.58 22.84 6.84 86.73 0.59 23.43 16 7 O -0.60 -26.88 15.72 -3.98 -0.06 -26.94 16 8 C -0.30 -13.31 5.89 -19.93 -0.12 -13.42 16 9 C -0.05 -1.90 9.47 22.25 0.21 -1.69 16 10 C -0.21 -10.08 8.73 22.47 0.20 -9.88 16 11 C 0.10 5.39 5.57 -21.28 -0.12 5.27 16 12 C -0.48 -24.15 8.95 23.46 0.21 -23.94 16 13 H 0.08 4.13 8.02 -2.91 -0.02 4.11 16 14 C 0.05 2.41 4.78 85.35 0.41 2.82 16 15 N -0.78 -36.33 11.79 21.87 0.26 -36.07 16 16 Si 0.98 33.86 29.66 68.60 2.03 35.89 16 17 H -0.26 -8.63 7.11 99.48 0.71 -7.93 16 18 H -0.26 -8.41 7.11 99.48 0.71 -7.70 16 19 H -0.26 -9.03 7.11 99.48 0.71 -8.33 16 20 C -0.26 -12.95 9.73 22.47 0.22 -12.73 16 21 C -0.03 -1.39 9.52 22.25 0.21 -1.17 16 22 C 0.12 2.31 2.42 30.59 0.07 2.38 16 23 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 24 O -0.56 -10.67 11.71 -148.98 -1.75 -12.41 16 25 C -0.13 -2.75 2.58 -10.80 -0.03 -2.77 16 26 C -0.15 -3.32 8.96 71.98 0.64 -2.67 16 27 C -0.14 -2.55 9.05 71.98 0.65 -1.89 16 28 H 0.03 0.92 7.09 -2.39 -0.02 0.91 16 29 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.57 7.79 -2.39 -0.02 1.55 16 33 H 0.40 9.99 5.43 -92.71 -0.50 9.49 16 34 H 0.12 4.11 6.37 -2.91 -0.02 4.09 16 35 H 0.10 4.88 6.55 -2.91 -0.02 4.86 16 36 H 0.30 12.32 8.29 -92.71 -0.77 11.55 16 37 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 38 H 0.10 4.63 7.63 -2.91 -0.02 4.61 16 39 H 0.38 6.01 7.65 -74.05 -0.57 5.44 16 40 H 0.06 1.51 7.38 -2.39 -0.02 1.49 16 41 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.04 1.12 6.63 -2.39 -0.02 1.10 16 44 H 0.06 1.16 7.43 -2.38 -0.02 1.14 16 45 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -59.53 368.14 2.92 -56.61 By element: Atomic # 1 Polarization: 44.37 SS G_CDS: -0.08 Total: 44.29 kcal Atomic # 6 Polarization: -43.22 SS G_CDS: 4.10 Total: -39.12 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -1.33 Total: -58.32 kcal Atomic # 8 Polarization: -37.55 SS G_CDS: -1.81 Total: -39.36 kcal Atomic # 14 Polarization: 33.86 SS G_CDS: 2.03 Total: 35.89 kcal Total: -59.53 2.92 -56.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412726269.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.235 kcal (2) G-P(sol) polarization free energy of solvation -59.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds