Wall clock time and date at job start Fri Apr 10 2020 21:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47216 * 2 1 4 4 H 1.09003 * 109.46843 * 305.00419 * 3 2 1 5 5 N 1.46507 * 109.47085 * 64.99743 * 3 2 1 6 6 C 1.34778 * 119.99750 * 256.54529 * 5 3 2 7 7 O 1.21586 * 120.00159 * 0.02562 * 6 5 3 8 8 C 1.47648 * 119.99665 * 180.02562 * 6 5 3 9 9 C 1.40010 * 119.89362 * 179.97438 * 8 6 5 10 10 C 1.36319 * 120.10368 * 180.27583 * 9 8 6 11 11 C 1.40882 * 119.89354 * 359.50455 * 10 9 8 12 12 C 1.41109 * 120.10591 * 180.22958 * 11 10 9 13 13 H 1.07998 * 120.00185 * 204.02848 * 12 11 10 14 14 C 1.40227 * 119.99920 * 24.02697 * 12 11 10 15 15 N 1.30645 * 119.99799 * 15.80676 * 14 12 11 16 16 Si 1.86794 * 119.99952 * 195.81107 * 14 12 11 17 17 H 1.48497 * 109.47294 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47414 * 119.99842 * 16 14 12 19 19 H 1.48505 * 109.47061 * 239.99791 * 16 14 12 20 20 C 1.40896 * 119.79033 * 0.49729 * 11 10 9 21 21 C 1.36310 * 119.89171 * 359.75040 * 20 11 10 22 22 C 1.52997 * 109.47277 * 185.00042 * 3 2 1 23 23 H 1.08995 * 109.47052 * 61.98079 * 22 3 2 24 24 O 1.42903 * 109.46958 * 301.97826 * 22 3 2 25 25 C 1.53004 * 109.47194 * 181.98209 * 22 3 2 26 26 C 1.52994 * 109.47039 * 173.99213 * 25 22 3 27 27 C 1.53000 * 109.46689 * 293.99105 * 25 22 3 28 28 H 1.08998 * 109.47000 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47290 * 299.99957 * 1 2 3 30 30 H 1.08998 * 109.47311 * 60.00018 * 1 2 3 31 31 H 1.08992 * 109.47248 * 239.99672 * 2 1 3 32 32 H 1.09008 * 109.46779 * 119.99453 * 2 1 3 33 33 H 0.96998 * 119.99685 * 76.55481 * 5 3 2 34 34 H 1.08005 * 119.94756 * 0.02562 * 9 8 6 35 35 H 1.08001 * 120.04993 * 179.74689 * 10 9 8 36 36 H 0.97005 * 119.99818 * 179.97438 * 15 14 12 37 37 H 1.07998 * 120.04872 * 179.73729 * 20 11 10 38 38 H 1.08001 * 119.94835 * 179.97438 * 21 20 11 39 39 H 0.96700 * 114.00114 * 299.99939 * 24 22 3 40 40 H 1.09003 * 109.47208 * 53.98849 * 25 22 3 41 41 H 1.09004 * 109.47263 * 175.00442 * 26 25 22 42 42 H 1.08999 * 109.46965 * 295.00103 * 26 25 22 43 43 H 1.09000 * 109.47107 * 55.00285 * 26 25 22 44 44 H 1.08996 * 109.47716 * 60.00080 * 27 25 22 45 45 H 1.09002 * 109.47023 * 180.02562 * 27 25 22 46 46 H 1.09003 * 109.47087 * 299.99818 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 7 1.6524 2.0975 1.2518 6 6 0.6255 2.9704 1.2658 7 8 0.0206 3.2139 0.2395 8 6 0.2353 3.6309 2.5273 9 6 -0.8314 4.5377 2.5391 10 6 -1.1918 5.1543 3.7003 11 6 -0.4957 4.8699 4.8917 12 6 -0.8680 5.5019 6.0971 13 1 -0.1493 5.6066 6.8964 14 6 -2.1713 5.9940 6.2572 15 7 -3.1193 5.6089 5.4449 16 14 -2.5519 7.2001 7.6319 17 1 -1.3151 7.4738 8.4068 18 1 -3.0633 8.4674 7.0511 19 1 -3.5801 6.6174 8.5311 20 6 0.5771 3.9566 4.8746 21 6 0.9334 3.3489 3.7077 22 6 3.5648 1.4443 -0.1257 23 1 3.8518 0.9886 -1.0733 24 8 4.1326 0.6985 0.9529 25 6 4.0789 2.8845 -0.0760 26 6 5.6086 2.8794 -0.0508 27 6 3.5917 3.6428 -1.3124 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.1349 1.9030 2.0705 34 1 -1.3670 4.7522 1.6261 35 1 -2.0121 5.8567 3.7076 36 1 -4.0210 5.9491 5.5559 37 1 1.1163 3.7387 5.7846 38 1 1.7558 2.6490 3.6935 39 1 3.9181 1.0480 1.8286 40 1 3.7023 3.3740 0.8221 41 1 5.9764 3.9041 -0.1050 42 1 5.9552 2.4174 0.8736 43 1 5.9842 2.3130 -0.9031 44 1 2.5019 3.6465 -1.3305 45 1 3.9584 4.6687 -1.2773 46 1 3.9683 3.1533 -2.2106 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412726271.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:35:10 Heat of formation + Delta-G solvation = -99.206507 kcal Electronic energy + Delta-G solvation = -25616.483917 eV Core-core repulsion = 22083.488420 eV Total energy + Delta-G solvation = -3532.995497 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.97068 -38.21903 -36.99690 -34.63724 -34.21636 -33.92211 -32.04425 -30.09567 -29.50996 -28.18083 -26.92933 -25.84845 -23.79475 -22.26258 -21.17592 -20.60462 -20.26296 -19.69034 -17.58666 -17.29201 -16.63230 -15.67054 -15.56146 -15.28474 -14.67236 -14.48258 -14.08963 -14.00363 -13.70068 -13.29337 -13.11977 -12.89829 -12.74957 -12.48342 -12.29279 -12.21301 -12.18778 -11.86004 -11.59124 -11.48663 -11.41467 -11.26253 -11.15680 -10.99160 -10.91349 -10.79523 -10.65616 -10.44257 -10.06598 -9.87899 -9.57806 -9.36699 -8.99490 -8.57512 -7.72643 -7.59062 -7.02427 -4.63251 2.20879 2.88678 2.94079 2.99317 3.00975 3.67735 3.72541 3.85202 4.22720 4.54481 4.56538 4.80000 4.92111 5.20946 5.24606 5.28741 5.47250 5.55971 5.56891 5.60904 5.69078 5.73271 5.81511 5.91957 5.92745 5.97966 6.06887 6.08265 6.11490 6.25434 6.28284 6.28852 6.39805 6.54460 6.77859 6.81299 6.93124 7.04806 7.08653 7.41115 7.49249 7.58854 7.76447 7.85446 8.02871 8.20171 8.41827 8.61221 8.73399 9.05427 9.87887 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021115 B = 0.003329 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.775501 B = 8409.917707 C = 8851.257181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C 0.108 3.892 4 H 0.104 0.896 5 N -0.734 5.734 6 C 0.576 3.424 7 O -0.569 6.569 8 C -0.284 4.284 9 C -0.036 4.036 10 C -0.183 4.183 11 C 0.127 3.873 12 C -0.441 4.441 13 H 0.084 0.916 14 C 0.072 3.928 15 N -0.770 5.770 16 Si 0.914 3.086 17 H -0.258 1.258 18 H -0.269 1.269 19 H -0.271 1.271 20 C -0.235 4.235 21 C -0.050 4.050 22 C 0.104 3.896 23 H 0.104 0.896 24 O -0.557 6.557 25 C -0.128 4.128 26 C -0.139 4.139 27 C -0.148 4.148 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.391 0.609 34 H 0.099 0.901 35 H 0.124 0.876 36 H 0.286 0.714 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.370 0.630 40 H 0.079 0.921 41 H 0.051 0.949 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.846 -5.445 -6.470 12.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.164 4.164 3 C 0.003 3.997 4 H 0.122 0.878 5 N -0.388 5.388 6 C 0.371 3.629 7 O -0.450 6.450 8 C -0.289 4.289 9 C -0.056 4.056 10 C -0.202 4.202 11 C 0.123 3.877 12 C -0.469 4.469 13 H 0.102 0.898 14 C -0.149 4.149 15 N -0.393 5.393 16 Si 0.738 3.262 17 H -0.181 1.181 18 H -0.194 1.194 19 H -0.196 1.196 20 C -0.255 4.255 21 C -0.069 4.069 22 C 0.044 3.956 23 H 0.121 0.879 24 O -0.362 6.362 25 C -0.147 4.147 26 C -0.197 4.197 27 C -0.206 4.206 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.226 0.774 34 H 0.117 0.883 35 H 0.142 0.858 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.217 0.783 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.392 -5.613 -7.746 13.406 hybrid contribution -0.329 0.706 1.476 1.669 sum 9.063 -4.907 -6.270 12.064 Atomic orbital electron populations 1.21699 0.95316 1.00639 1.02762 1.21793 0.96492 0.96007 1.02153 1.21691 0.94294 0.93798 0.89941 0.87767 1.45850 1.36218 1.46308 1.10422 1.18541 0.78112 0.77094 0.89191 1.90633 1.54318 1.64950 1.35130 1.18921 1.06503 1.11526 0.91921 1.20489 0.93837 0.93924 0.97338 1.21102 1.03874 1.03988 0.91245 1.17797 0.89400 0.87540 0.92921 1.19889 0.96248 1.30264 1.00459 0.89759 1.26116 0.95985 0.95370 0.97423 1.69747 1.02361 1.33623 1.33592 0.86153 0.79592 0.80058 0.80441 1.18095 1.19359 1.19649 1.20663 1.04396 1.03869 0.96526 1.20323 0.96545 0.97177 0.92849 1.22386 0.91042 0.91154 0.90976 0.87860 1.86562 1.76357 1.56270 1.16963 1.21780 0.96353 0.96172 1.00400 1.21727 0.94735 1.01192 1.02006 1.21823 1.02124 0.99926 0.96688 0.93443 0.92361 0.92702 0.91754 0.91508 0.77443 0.88263 0.85835 0.90224 0.88562 0.89477 0.78259 0.90287 0.92969 0.92319 0.92990 0.91655 0.92566 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.64 37.16 0.36 -1.71 16 2 C -0.13 -1.54 5.37 -26.73 -0.14 -1.69 16 3 C 0.11 1.40 1.85 -67.93 -0.13 1.27 16 4 H 0.10 1.56 5.62 -51.93 -0.29 1.26 16 5 N -0.73 -10.80 3.57 -54.81 -0.20 -11.00 16 6 C 0.58 11.28 6.77 -12.42 -0.08 11.20 16 7 O -0.57 -12.66 15.73 5.29 0.08 -12.57 16 8 C -0.28 -6.20 5.89 -104.73 -0.62 -6.82 16 9 C -0.04 -0.87 9.52 -39.61 -0.38 -1.25 16 10 C -0.18 -4.60 8.64 -39.27 -0.34 -4.94 16 11 C 0.13 3.17 5.59 -106.80 -0.60 2.57 16 12 C -0.44 -10.82 9.06 -37.75 -0.34 -11.16 16 13 H 0.08 1.96 7.90 -52.49 -0.41 1.55 16 14 C 0.07 1.68 5.19 -17.31 -0.09 1.59 16 15 N -0.77 -18.63 10.79 55.56 0.60 -18.03 16 16 Si 0.91 17.21 29.59 -169.99 -5.03 12.18 16 17 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 18 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 19 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 20 C -0.24 -5.28 9.73 -39.27 -0.38 -5.66 16 21 C -0.05 -1.01 9.47 -39.61 -0.38 -1.39 16 22 C 0.10 1.13 2.42 -26.73 -0.06 1.07 16 23 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 24 O -0.56 -5.97 11.86 -35.23 -0.42 -6.39 16 25 C -0.13 -1.43 2.58 -90.62 -0.23 -1.66 16 26 C -0.14 -1.38 8.90 37.15 0.33 -1.05 16 27 C -0.15 -1.70 8.97 37.16 0.33 -1.37 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.97 7.05 -51.92 -0.37 0.61 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.81 7.79 -51.92 -0.40 0.40 16 33 H 0.39 5.02 5.42 -40.82 -0.22 4.80 16 34 H 0.10 2.36 7.63 -52.48 -0.40 1.96 16 35 H 0.12 3.20 6.03 -52.49 -0.32 2.89 16 36 H 0.29 6.23 8.29 -40.82 -0.34 5.89 16 37 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 38 H 0.09 1.42 6.37 -52.49 -0.33 1.08 16 39 H 0.37 3.27 7.65 45.56 0.35 3.61 16 40 H 0.08 1.00 7.36 -51.93 -0.38 0.62 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.58 7.71 -51.93 -0.40 0.18 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.89 6.64 -51.93 -0.34 0.55 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 367.10 15.07 5.53 5.53 Total: -1.00 -27.38 367.10 -8.65 -36.02 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -6.47 Total: 15.25 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -2.75 Total: -20.99 kcal Atomic # 7 Polarization: -29.43 SS G_CDS: 0.40 Total: -29.03 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.33 Total: -18.96 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.18 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -27.38 -8.65 -36.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412726271.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.184 kcal (2) G-P(sol) polarization free energy of solvation -27.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds