Wall clock time and date at job start Fri Apr 10 2020 21:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47216 * 2 1 4 4 H 1.09003 * 109.46843 * 305.00419 * 3 2 1 5 5 N 1.46507 * 109.47085 * 64.99743 * 3 2 1 6 6 C 1.34778 * 119.99750 * 256.54529 * 5 3 2 7 7 O 1.21586 * 120.00159 * 0.02562 * 6 5 3 8 8 C 1.47648 * 119.99665 * 180.02562 * 6 5 3 9 9 C 1.40010 * 119.89362 * 179.97438 * 8 6 5 10 10 C 1.36319 * 120.10368 * 180.27583 * 9 8 6 11 11 C 1.40882 * 119.89354 * 359.50455 * 10 9 8 12 12 C 1.41109 * 120.10591 * 180.22958 * 11 10 9 13 13 H 1.07998 * 120.00185 * 204.02848 * 12 11 10 14 14 C 1.40227 * 119.99920 * 24.02697 * 12 11 10 15 15 N 1.30645 * 119.99799 * 15.80676 * 14 12 11 16 16 Si 1.86794 * 119.99952 * 195.81107 * 14 12 11 17 17 H 1.48497 * 109.47294 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47414 * 119.99842 * 16 14 12 19 19 H 1.48505 * 109.47061 * 239.99791 * 16 14 12 20 20 C 1.40896 * 119.79033 * 0.49729 * 11 10 9 21 21 C 1.36310 * 119.89171 * 359.75040 * 20 11 10 22 22 C 1.52997 * 109.47277 * 185.00042 * 3 2 1 23 23 H 1.08995 * 109.47052 * 61.98079 * 22 3 2 24 24 O 1.42903 * 109.46958 * 301.97826 * 22 3 2 25 25 C 1.53004 * 109.47194 * 181.98209 * 22 3 2 26 26 C 1.52994 * 109.47039 * 173.99213 * 25 22 3 27 27 C 1.53000 * 109.46689 * 293.99105 * 25 22 3 28 28 H 1.08998 * 109.47000 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47290 * 299.99957 * 1 2 3 30 30 H 1.08998 * 109.47311 * 60.00018 * 1 2 3 31 31 H 1.08992 * 109.47248 * 239.99672 * 2 1 3 32 32 H 1.09008 * 109.46779 * 119.99453 * 2 1 3 33 33 H 0.96998 * 119.99685 * 76.55481 * 5 3 2 34 34 H 1.08005 * 119.94756 * 0.02562 * 9 8 6 35 35 H 1.08001 * 120.04993 * 179.74689 * 10 9 8 36 36 H 0.97005 * 119.99818 * 179.97438 * 15 14 12 37 37 H 1.07998 * 120.04872 * 179.73729 * 20 11 10 38 38 H 1.08001 * 119.94835 * 179.97438 * 21 20 11 39 39 H 0.96700 * 114.00114 * 299.99939 * 24 22 3 40 40 H 1.09003 * 109.47208 * 53.98849 * 25 22 3 41 41 H 1.09004 * 109.47263 * 175.00442 * 26 25 22 42 42 H 1.08999 * 109.46965 * 295.00103 * 26 25 22 43 43 H 1.09000 * 109.47107 * 55.00285 * 26 25 22 44 44 H 1.08996 * 109.47716 * 60.00080 * 27 25 22 45 45 H 1.09002 * 109.47023 * 180.02562 * 27 25 22 46 46 H 1.09003 * 109.47087 * 299.99818 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 7 1.6524 2.0975 1.2518 6 6 0.6255 2.9704 1.2658 7 8 0.0206 3.2139 0.2395 8 6 0.2353 3.6309 2.5273 9 6 -0.8314 4.5377 2.5391 10 6 -1.1918 5.1543 3.7003 11 6 -0.4957 4.8699 4.8917 12 6 -0.8680 5.5019 6.0971 13 1 -0.1493 5.6066 6.8964 14 6 -2.1713 5.9940 6.2572 15 7 -3.1193 5.6089 5.4449 16 14 -2.5519 7.2001 7.6319 17 1 -1.3151 7.4738 8.4068 18 1 -3.0633 8.4674 7.0511 19 1 -3.5801 6.6174 8.5311 20 6 0.5771 3.9566 4.8746 21 6 0.9334 3.3489 3.7077 22 6 3.5648 1.4443 -0.1257 23 1 3.8518 0.9886 -1.0733 24 8 4.1326 0.6985 0.9529 25 6 4.0789 2.8845 -0.0760 26 6 5.6086 2.8794 -0.0508 27 6 3.5917 3.6428 -1.3124 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.1349 1.9030 2.0705 34 1 -1.3670 4.7522 1.6261 35 1 -2.0121 5.8567 3.7076 36 1 -4.0210 5.9491 5.5559 37 1 1.1163 3.7387 5.7846 38 1 1.7558 2.6490 3.6935 39 1 3.9181 1.0480 1.8286 40 1 3.7023 3.3740 0.8221 41 1 5.9764 3.9041 -0.1050 42 1 5.9552 2.4174 0.8736 43 1 5.9842 2.3130 -0.9031 44 1 2.5019 3.6465 -1.3305 45 1 3.9584 4.6687 -1.2773 46 1 3.9683 3.1533 -2.2106 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412726271.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:35:09 Heat of formation + Delta-G solvation = -114.783520 kcal Electronic energy + Delta-G solvation = -25617.159387 eV Core-core repulsion = 22083.488420 eV Total energy + Delta-G solvation = -3533.670967 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.26933 -39.62245 -38.59429 -35.82695 -35.68846 -35.07388 -33.39328 -31.85743 -31.23424 -29.29595 -27.85588 -27.50760 -24.83929 -23.86469 -22.85973 -21.75070 -21.56498 -21.00061 -19.36150 -18.70566 -17.78182 -17.12951 -16.82561 -16.48157 -15.82934 -15.77575 -15.70965 -15.38086 -14.98293 -14.68810 -14.60718 -14.35467 -14.00322 -13.74654 -13.65463 -13.39424 -13.25833 -13.19730 -13.03321 -12.82064 -12.64521 -12.53243 -12.47043 -12.38219 -12.15465 -11.91730 -11.77982 -11.72671 -11.39559 -11.34461 -11.13576 -10.86258 -10.63819 -9.87938 -9.55452 -9.38818 -8.76843 -6.48315 0.46999 1.16564 1.37656 1.41697 1.54618 2.13639 2.19724 2.37272 2.82124 3.35978 3.62905 3.71305 3.86652 4.03129 4.17705 4.23616 4.27380 4.34012 4.35436 4.41903 4.53198 4.65494 4.73701 4.79690 4.85860 4.94843 4.97650 4.98547 5.02653 5.03781 5.06428 5.19339 5.24544 5.25993 5.27603 5.39171 5.43122 5.45379 5.59371 5.68278 5.80218 5.98940 6.02944 6.21565 6.57882 6.72213 6.75581 6.78097 6.91110 7.52451 8.16780 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021115 B = 0.003329 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.775501 B = 8409.917707 C = 8851.257181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C 0.108 3.892 4 H 0.084 0.916 5 N -0.712 5.712 6 C 0.579 3.421 7 O -0.600 6.600 8 C -0.291 4.291 9 C -0.052 4.052 10 C -0.204 4.204 11 C 0.099 3.901 12 C -0.472 4.472 13 H 0.091 0.909 14 C 0.032 3.968 15 N -0.806 5.806 16 Si 0.989 3.011 17 H -0.251 1.251 18 H -0.266 1.266 19 H -0.264 1.264 20 C -0.246 4.246 21 C -0.038 4.038 22 C 0.118 3.882 23 H 0.119 0.881 24 O -0.557 6.557 25 C -0.126 4.126 26 C -0.134 4.134 27 C -0.147 4.147 28 H 0.065 0.935 29 H 0.027 0.973 30 H 0.039 0.961 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.403 0.597 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.294 0.706 37 H 0.115 0.885 38 H 0.135 0.865 39 H 0.380 0.620 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.037 0.963 45 H 0.054 0.946 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.204 -6.864 -6.026 15.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C 0.004 3.996 4 H 0.102 0.898 5 N -0.365 5.365 6 C 0.372 3.628 7 O -0.483 6.483 8 C -0.295 4.295 9 C -0.071 4.071 10 C -0.224 4.224 11 C 0.096 3.904 12 C -0.499 4.499 13 H 0.109 0.891 14 C -0.186 4.186 15 N -0.430 5.430 16 Si 0.809 3.191 17 H -0.174 1.174 18 H -0.190 1.190 19 H -0.189 1.189 20 C -0.265 4.265 21 C -0.056 4.056 22 C 0.058 3.942 23 H 0.137 0.863 24 O -0.363 6.363 25 C -0.145 4.145 26 C -0.191 4.191 27 C -0.204 4.204 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.240 0.760 34 H 0.106 0.894 35 H 0.123 0.877 36 H 0.105 0.895 37 H 0.133 0.867 38 H 0.153 0.847 39 H 0.228 0.772 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.073 0.927 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.790 -7.067 -7.297 15.562 hybrid contribution -1.022 1.059 1.219 1.911 sum 10.768 -6.007 -6.078 13.747 Atomic orbital electron populations 1.21671 0.96941 1.01093 1.00508 1.21775 0.94869 0.95449 1.03730 1.21850 0.96027 0.93783 0.87989 0.89772 1.45593 1.34398 1.44598 1.11938 1.18238 0.78981 0.77693 0.87842 1.90622 1.55695 1.66153 1.35871 1.19237 1.05731 1.10786 0.93781 1.20553 0.94981 0.95012 0.96590 1.21013 1.04329 1.04823 0.92186 1.18155 0.90594 0.88669 0.93018 1.20186 0.97269 1.31758 1.00714 0.89097 1.27013 0.95321 0.96472 0.99774 1.69806 1.03045 1.34788 1.35355 0.85047 0.79529 0.77379 0.77194 1.17424 1.19033 1.18862 1.20942 1.03975 1.03481 0.98118 1.20681 0.96885 0.96824 0.91250 1.22263 0.88898 0.91165 0.91886 0.86300 1.86565 1.76122 1.56203 1.17442 1.21751 0.97405 0.96077 0.99297 1.21679 0.93357 1.01539 1.02568 1.21798 1.00324 1.00337 0.97931 0.91646 0.95403 0.94133 0.89458 0.90510 0.75978 0.89365 0.87704 0.89503 0.86694 0.84718 0.77194 0.91995 0.92859 0.92008 0.92076 0.94338 0.92707 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 9.64 71.98 0.69 -3.24 16 2 C -0.12 -2.62 5.37 30.59 0.16 -2.46 16 3 C 0.11 2.59 1.85 44.99 0.08 2.68 16 4 H 0.08 2.46 5.62 -2.39 -0.01 2.44 16 5 N -0.71 -19.84 3.57 -445.57 -1.59 -21.43 16 6 C 0.58 22.70 6.77 86.73 0.59 23.29 16 7 O -0.60 -27.39 15.73 -3.99 -0.06 -27.46 16 8 C -0.29 -12.78 5.89 -19.93 -0.12 -12.90 16 9 C -0.05 -2.61 9.52 22.25 0.21 -2.39 16 10 C -0.20 -10.81 8.64 22.47 0.19 -10.61 16 11 C 0.10 5.07 5.59 -21.28 -0.12 4.95 16 12 C -0.47 -23.62 9.06 23.46 0.21 -23.41 16 13 H 0.09 4.26 7.90 -2.91 -0.02 4.24 16 14 C 0.03 1.52 5.19 85.35 0.44 1.97 16 15 N -0.81 -40.42 10.79 21.87 0.24 -40.18 16 16 Si 0.99 35.40 29.59 68.60 2.03 37.43 16 17 H -0.25 -8.64 7.11 99.48 0.71 -7.93 16 18 H -0.27 -9.29 7.11 99.48 0.71 -8.58 16 19 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 20 C -0.25 -10.92 9.73 22.47 0.22 -10.70 16 21 C -0.04 -1.48 9.47 22.25 0.21 -1.27 16 22 C 0.12 2.20 2.42 30.59 0.07 2.27 16 23 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 24 O -0.56 -9.76 11.86 -148.98 -1.77 -11.53 16 25 C -0.13 -2.53 2.58 -10.79 -0.03 -2.56 16 26 C -0.13 -2.27 8.90 71.98 0.64 -1.63 16 27 C -0.15 -3.18 8.97 71.98 0.65 -2.54 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.03 0.90 7.05 -2.38 -0.02 0.89 16 30 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.08 1.57 7.79 -2.38 -0.02 1.55 16 33 H 0.40 9.18 5.42 -92.71 -0.50 8.68 16 34 H 0.09 4.49 7.63 -2.91 -0.02 4.47 16 35 H 0.11 5.83 6.03 -2.91 -0.02 5.81 16 36 H 0.29 13.21 8.29 -92.70 -0.77 12.44 16 37 H 0.12 4.59 8.06 -2.91 -0.02 4.56 16 38 H 0.14 3.89 6.37 -2.91 -0.02 3.87 16 39 H 0.38 5.15 7.65 -74.06 -0.57 4.59 16 40 H 0.06 1.46 7.36 -2.39 -0.02 1.44 16 41 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.06 1.02 7.71 -2.39 -0.02 1.00 16 43 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.04 1.04 6.64 -2.39 -0.02 1.03 16 45 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -62.12 367.10 2.88 -59.24 By element: Atomic # 1 Polarization: 42.56 SS G_CDS: -0.08 Total: 42.48 kcal Atomic # 6 Polarization: -42.66 SS G_CDS: 4.12 Total: -38.54 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -1.35 Total: -61.62 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -1.83 Total: -38.98 kcal Atomic # 14 Polarization: 35.40 SS G_CDS: 2.03 Total: 37.43 kcal Total: -62.12 2.88 -59.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412726271.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.548 kcal (2) G-P(sol) polarization free energy of solvation -62.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds