Wall clock time and date at job start Fri Apr 10 2020 21:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.46949 * 2 1 4 4 H 1.09002 * 109.47281 * 305.00200 * 3 2 1 5 5 N 1.46499 * 109.47288 * 64.99931 * 3 2 1 6 6 C 1.34780 * 120.00356 * 275.00427 * 5 3 2 7 7 O 1.21549 * 119.99615 * 359.97438 * 6 5 3 8 8 C 1.47879 * 120.00090 * 180.27778 * 6 5 3 9 9 C 1.39919 * 120.02658 * 359.44370 * 8 6 5 10 10 C 1.38327 * 120.35697 * 179.72311 * 9 8 6 11 11 C 1.37753 * 120.41358 * 0.55402 * 10 9 8 12 12 C 1.40755 * 120.03861 * 359.72731 * 11 10 9 13 13 C 1.41434 * 120.17746 * 180.02562 * 12 11 10 14 14 H 1.08006 * 120.00137 * 334.91993 * 13 12 11 15 15 C 1.39936 * 120.00172 * 154.92854 * 13 12 11 16 16 N 1.30823 * 119.99598 * 342.58491 * 15 13 12 17 17 Si 1.86795 * 120.00306 * 162.58962 * 15 13 12 18 18 H 1.48507 * 109.47267 * 59.99506 * 17 15 13 19 19 H 1.48500 * 109.47239 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47132 * 299.99747 * 17 15 13 21 21 C 1.39002 * 120.02462 * 179.72366 * 8 6 5 22 22 C 1.52995 * 109.46940 * 185.00207 * 3 2 1 23 23 H 1.09003 * 109.47255 * 185.00168 * 22 3 2 24 24 O 1.42898 * 109.47301 * 304.99771 * 22 3 2 25 25 C 1.53001 * 109.47388 * 64.99955 * 22 3 2 26 26 C 1.52994 * 109.46969 * 60.00062 * 25 22 3 27 27 C 1.53001 * 109.47027 * 179.97438 * 25 22 3 28 28 H 1.09001 * 109.46830 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46757 * 300.00089 * 1 2 3 30 30 H 1.08993 * 109.47279 * 59.99827 * 1 2 3 31 31 H 1.08996 * 109.47256 * 240.00327 * 2 1 3 32 32 H 1.09001 * 109.46983 * 119.99588 * 2 1 3 33 33 H 0.97004 * 120.00232 * 94.99495 * 5 3 2 34 34 H 1.07994 * 119.81886 * 359.97438 * 9 8 6 35 35 H 1.08001 * 119.79672 * 180.25783 * 10 9 8 36 36 H 1.08001 * 119.98047 * 179.74078 * 11 10 9 37 37 H 0.97002 * 120.00192 * 180.02562 * 16 15 13 38 38 H 1.07996 * 120.19802 * 359.97438 * 21 8 6 39 39 H 0.96698 * 113.99801 * 59.99661 * 24 22 3 40 40 H 1.08998 * 109.46815 * 299.99910 * 25 22 3 41 41 H 1.09009 * 109.47363 * 300.00090 * 26 25 22 42 42 H 1.08998 * 109.47535 * 59.99699 * 26 25 22 43 43 H 1.08999 * 109.47350 * 179.97438 * 26 25 22 44 44 H 1.09002 * 109.46832 * 60.00074 * 27 25 22 45 45 H 1.08999 * 109.46772 * 179.97438 * 27 25 22 46 46 H 1.08998 * 109.47039 * 300.00033 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6525 2.0976 1.2518 6 6 0.4351 2.6644 1.3670 7 8 -0.3410 2.6326 0.4321 8 6 0.0462 3.3309 2.6285 9 6 0.9372 3.3633 3.7068 10 6 0.5828 3.9899 4.8880 11 6 -0.6553 4.5792 5.0205 12 6 -1.5671 4.5516 3.9487 13 6 -2.8388 5.1562 4.0813 14 1 -3.2810 5.2749 5.0596 15 6 -3.5244 5.6004 2.9452 16 7 -2.8806 5.7764 1.8200 17 14 -5.3586 5.9422 3.0351 18 1 -5.6162 6.9994 4.0458 19 1 -5.8428 6.3987 1.7075 20 1 -6.0750 4.7008 3.4237 21 6 -1.2070 3.9207 2.7459 22 6 3.5648 1.4444 -0.1258 23 1 3.9355 2.4656 -0.0366 24 8 4.1294 0.6405 0.9120 25 6 3.9650 0.8736 -1.4878 26 6 3.3606 1.7344 -2.5989 27 6 5.4898 0.8761 -1.6137 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.2719 2.1232 1.9978 34 1 1.9085 2.9001 3.6150 35 1 1.2792 4.0131 5.7132 36 1 -0.9263 5.0628 5.9474 37 1 -3.3557 6.0847 1.0325 38 1 -1.8994 3.8945 1.9176 39 1 3.8427 -0.2828 0.8943 40 1 3.5943 -0.1475 -1.5768 41 1 2.2742 1.7331 -2.5093 42 1 3.7312 2.7555 -2.5098 43 1 3.6460 1.3281 -3.5692 44 1 5.9207 0.2631 -0.8221 45 1 5.7748 0.4690 -2.5838 46 1 5.8600 1.8974 -1.5248 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412757193.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:35:20 Heat of formation + Delta-G solvation = -92.723276 kcal Electronic energy + Delta-G solvation = -25632.704409 eV Core-core repulsion = 22099.990046 eV Total energy + Delta-G solvation = -3532.714363 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.03166 -38.42509 -36.94361 -34.49247 -34.37650 -33.73353 -32.06577 -30.00295 -29.40334 -28.15291 -27.02459 -25.28908 -23.91371 -22.86422 -21.32891 -20.89535 -19.92402 -19.40517 -17.76488 -16.94979 -16.17503 -15.89647 -15.54626 -15.25768 -14.94423 -14.55852 -14.45456 -13.87136 -13.75183 -13.19585 -13.12647 -12.97325 -12.63884 -12.51839 -12.45910 -12.31797 -12.14457 -11.91317 -11.63497 -11.46458 -11.35905 -11.14284 -11.08791 -11.03767 -10.73472 -10.65245 -10.51871 -10.44350 -9.99520 -9.95737 -9.66800 -9.19885 -8.94852 -8.54249 -7.60688 -7.49862 -6.78511 -4.40137 2.23642 2.83672 3.07924 3.09608 3.17583 3.61732 3.88426 3.93172 4.24380 4.51533 4.64828 4.65733 4.71620 5.00691 5.08580 5.19876 5.31960 5.44184 5.48490 5.60773 5.62557 5.66271 5.68751 5.75304 5.85849 5.95010 5.96501 6.07711 6.10891 6.13990 6.21133 6.31230 6.34708 6.68169 6.74070 6.94013 7.00743 7.04534 7.22956 7.40262 7.46444 7.72653 7.78853 7.94691 8.14154 8.22392 8.52153 8.81806 8.85167 9.00416 10.16257 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.020418 B = 0.003539 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.987558 B = 7909.741763 C = 8584.336109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.138 4.138 3 C 0.112 3.888 4 H 0.097 0.903 5 N -0.727 5.727 6 C 0.564 3.436 7 O -0.542 6.542 8 C -0.129 4.129 9 C -0.216 4.216 10 C -0.099 4.099 11 C -0.212 4.212 12 C 0.099 3.901 13 C -0.462 4.462 14 H 0.080 0.920 15 C 0.074 3.926 16 N -0.784 5.784 17 Si 0.910 3.090 18 H -0.265 1.265 19 H -0.278 1.278 20 H -0.263 1.263 21 C -0.092 4.092 22 C 0.103 3.897 23 H 0.104 0.896 24 O -0.557 6.557 25 C -0.125 4.125 26 C -0.153 4.153 27 C -0.142 4.142 28 H 0.041 0.959 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.402 0.598 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.284 0.716 38 H 0.133 0.867 39 H 0.372 0.628 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.240 -9.530 -6.339 16.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.006 3.994 4 H 0.115 0.885 5 N -0.381 5.381 6 C 0.355 3.645 7 O -0.421 6.421 8 C -0.132 4.132 9 C -0.236 4.236 10 C -0.117 4.117 11 C -0.232 4.232 12 C 0.096 3.904 13 C -0.491 4.491 14 H 0.098 0.902 15 C -0.145 4.145 16 N -0.409 5.409 17 Si 0.734 3.266 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.187 1.187 21 C -0.112 4.112 22 C 0.044 3.956 23 H 0.122 0.878 24 O -0.362 6.362 25 C -0.144 4.144 26 C -0.211 4.211 27 C -0.199 4.199 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.238 0.762 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.151 0.849 39 H 0.220 0.780 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.933 -8.886 -7.119 15.785 hybrid contribution -0.724 -0.234 0.158 0.777 sum 10.208 -9.120 -6.962 15.357 Atomic orbital electron populations 1.21778 0.94279 1.00227 1.03851 1.22003 0.98026 0.96267 1.01360 1.21678 0.94379 0.93917 0.89400 0.88532 1.45927 1.17494 1.58756 1.15915 1.18788 0.80558 0.76809 0.88325 1.90693 1.51343 1.59456 1.40571 1.19499 0.97237 1.03978 0.92516 1.20379 0.98794 1.09718 0.94740 1.20440 0.96279 0.98822 0.96140 1.21107 0.94435 1.07522 1.00095 1.17593 0.92456 0.89533 0.90808 1.19547 1.01128 1.34267 0.94133 0.90178 1.25947 1.00613 0.93223 0.94736 1.69782 1.37842 1.31491 1.01749 0.86334 0.82148 0.79724 0.78355 1.18997 1.20245 1.18749 1.21621 0.94390 0.95828 0.99337 1.22304 0.91147 0.95719 0.86454 0.87818 1.86577 1.72162 1.24836 1.52664 1.21807 0.96905 1.00501 0.95179 1.21909 1.01460 0.99936 0.97772 1.21754 0.94506 1.02207 1.01472 0.93976 0.91671 0.92212 0.91505 0.91937 0.76194 0.89154 0.88945 0.88670 0.90451 0.84893 0.77968 0.90523 0.91761 0.92315 0.92384 0.92042 0.92855 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.51 37.16 0.32 -1.85 16 2 C -0.14 -1.64 4.89 -26.72 -0.13 -1.77 16 3 C 0.11 1.48 1.91 -67.93 -0.13 1.35 16 4 H 0.10 1.45 5.61 -51.93 -0.29 1.16 16 5 N -0.73 -11.86 4.96 -54.74 -0.27 -12.14 16 6 C 0.56 11.98 6.34 -12.31 -0.08 11.91 16 7 O -0.54 -12.83 13.47 5.32 0.07 -12.76 16 8 C -0.13 -3.04 5.87 -105.04 -0.62 -3.65 16 9 C -0.22 -4.61 9.55 -38.92 -0.37 -4.98 16 10 C -0.10 -2.13 10.01 -39.73 -0.40 -2.53 16 11 C -0.21 -5.07 9.78 -38.81 -0.38 -5.45 16 12 C 0.10 2.62 5.57 -106.87 -0.59 2.02 16 13 C -0.46 -12.18 9.05 -37.73 -0.34 -12.52 16 14 H 0.08 2.00 7.90 -52.48 -0.41 1.59 16 15 C 0.07 1.87 5.14 -17.35 -0.09 1.78 16 16 N -0.78 -20.78 10.97 55.55 0.61 -20.17 16 17 Si 0.91 18.85 29.59 -169.99 -5.03 13.82 16 18 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 19 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 21 C -0.09 -2.44 8.23 -38.44 -0.32 -2.75 16 22 C 0.10 1.10 2.45 -26.73 -0.07 1.03 16 23 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 24 O -0.56 -5.81 12.30 -35.23 -0.43 -6.24 16 25 C -0.12 -1.08 2.45 -90.62 -0.22 -1.30 16 26 C -0.15 -1.38 8.85 37.15 0.33 -1.06 16 27 C -0.14 -1.15 9.05 37.16 0.34 -0.81 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 1.20 5.65 -51.93 -0.29 0.91 16 30 H 0.06 0.97 7.84 -51.93 -0.41 0.56 16 31 H 0.07 0.64 6.34 -51.93 -0.33 0.31 16 32 H 0.06 0.68 7.00 -51.93 -0.36 0.32 16 33 H 0.40 6.14 6.40 -40.82 -0.26 5.88 16 34 H 0.09 1.63 6.38 -52.49 -0.33 1.30 16 35 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 36 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 37 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 38 H 0.13 3.82 5.76 -52.49 -0.30 3.51 16 39 H 0.37 2.91 7.31 45.56 0.33 3.24 16 40 H 0.08 0.60 6.46 -51.93 -0.34 0.27 16 41 H 0.06 0.65 6.32 -51.92 -0.33 0.32 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.50 7.68 -51.93 -0.40 0.10 16 45 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 360.19 15.07 5.43 5.43 Total: -1.00 -29.09 360.19 -8.62 -37.72 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -6.24 Total: 14.93 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -2.75 Total: -20.58 kcal Atomic # 7 Polarization: -32.65 SS G_CDS: 0.34 Total: -32.31 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.36 Total: -19.00 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.09 -8.62 -37.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412757193.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.006 kcal (2) G-P(sol) polarization free energy of solvation -29.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds