Wall clock time and date at job start Fri Apr 10 2020 21:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.46949 * 2 1 4 4 H 1.09002 * 109.47281 * 305.00200 * 3 2 1 5 5 N 1.46499 * 109.47288 * 64.99931 * 3 2 1 6 6 C 1.34780 * 120.00356 * 275.00427 * 5 3 2 7 7 O 1.21549 * 119.99615 * 359.97438 * 6 5 3 8 8 C 1.47879 * 120.00090 * 180.27778 * 6 5 3 9 9 C 1.39919 * 120.02658 * 359.44370 * 8 6 5 10 10 C 1.38327 * 120.35697 * 179.72311 * 9 8 6 11 11 C 1.37753 * 120.41358 * 0.55402 * 10 9 8 12 12 C 1.40755 * 120.03861 * 359.72731 * 11 10 9 13 13 C 1.41434 * 120.17746 * 180.02562 * 12 11 10 14 14 H 1.08006 * 120.00137 * 334.91993 * 13 12 11 15 15 C 1.39936 * 120.00172 * 154.92854 * 13 12 11 16 16 N 1.30823 * 119.99598 * 342.58491 * 15 13 12 17 17 Si 1.86795 * 120.00306 * 162.58962 * 15 13 12 18 18 H 1.48507 * 109.47267 * 59.99506 * 17 15 13 19 19 H 1.48500 * 109.47239 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47132 * 299.99747 * 17 15 13 21 21 C 1.39002 * 120.02462 * 179.72366 * 8 6 5 22 22 C 1.52995 * 109.46940 * 185.00207 * 3 2 1 23 23 H 1.09003 * 109.47255 * 185.00168 * 22 3 2 24 24 O 1.42898 * 109.47301 * 304.99771 * 22 3 2 25 25 C 1.53001 * 109.47388 * 64.99955 * 22 3 2 26 26 C 1.52994 * 109.46969 * 60.00062 * 25 22 3 27 27 C 1.53001 * 109.47027 * 179.97438 * 25 22 3 28 28 H 1.09001 * 109.46830 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46757 * 300.00089 * 1 2 3 30 30 H 1.08993 * 109.47279 * 59.99827 * 1 2 3 31 31 H 1.08996 * 109.47256 * 240.00327 * 2 1 3 32 32 H 1.09001 * 109.46983 * 119.99588 * 2 1 3 33 33 H 0.97004 * 120.00232 * 94.99495 * 5 3 2 34 34 H 1.07994 * 119.81886 * 359.97438 * 9 8 6 35 35 H 1.08001 * 119.79672 * 180.25783 * 10 9 8 36 36 H 1.08001 * 119.98047 * 179.74078 * 11 10 9 37 37 H 0.97002 * 120.00192 * 180.02562 * 16 15 13 38 38 H 1.07996 * 120.19802 * 359.97438 * 21 8 6 39 39 H 0.96698 * 113.99801 * 59.99661 * 24 22 3 40 40 H 1.08998 * 109.46815 * 299.99910 * 25 22 3 41 41 H 1.09009 * 109.47363 * 300.00090 * 26 25 22 42 42 H 1.08998 * 109.47535 * 59.99699 * 26 25 22 43 43 H 1.08999 * 109.47350 * 179.97438 * 26 25 22 44 44 H 1.09002 * 109.46832 * 60.00074 * 27 25 22 45 45 H 1.08999 * 109.46772 * 179.97438 * 27 25 22 46 46 H 1.08998 * 109.47039 * 300.00033 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6525 2.0976 1.2518 6 6 0.4351 2.6644 1.3670 7 8 -0.3410 2.6326 0.4321 8 6 0.0462 3.3309 2.6285 9 6 0.9372 3.3633 3.7068 10 6 0.5828 3.9899 4.8880 11 6 -0.6553 4.5792 5.0205 12 6 -1.5671 4.5516 3.9487 13 6 -2.8388 5.1562 4.0813 14 1 -3.2810 5.2749 5.0596 15 6 -3.5244 5.6004 2.9452 16 7 -2.8806 5.7764 1.8200 17 14 -5.3586 5.9422 3.0351 18 1 -5.6162 6.9994 4.0458 19 1 -5.8428 6.3987 1.7075 20 1 -6.0750 4.7008 3.4237 21 6 -1.2070 3.9207 2.7459 22 6 3.5648 1.4444 -0.1258 23 1 3.9355 2.4656 -0.0366 24 8 4.1294 0.6405 0.9120 25 6 3.9650 0.8736 -1.4878 26 6 3.3606 1.7344 -2.5989 27 6 5.4898 0.8761 -1.6137 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.2719 2.1232 1.9978 34 1 1.9085 2.9001 3.6150 35 1 1.2792 4.0131 5.7132 36 1 -0.9263 5.0628 5.9474 37 1 -3.3557 6.0847 1.0325 38 1 -1.8994 3.8945 1.9176 39 1 3.8427 -0.2828 0.8943 40 1 3.5943 -0.1475 -1.5768 41 1 2.2742 1.7331 -2.5093 42 1 3.7312 2.7555 -2.5098 43 1 3.6460 1.3281 -3.5692 44 1 5.9207 0.2631 -0.8221 45 1 5.7748 0.4690 -2.5838 46 1 5.8600 1.8974 -1.5248 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412757193.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:35:19 Heat of formation + Delta-G solvation = -111.363251 kcal Electronic energy + Delta-G solvation = -25633.512699 eV Core-core repulsion = 22099.990046 eV Total energy + Delta-G solvation = -3533.522653 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.35884 -39.75001 -38.65122 -35.78710 -35.56772 -35.13606 -33.45082 -31.74039 -31.24689 -29.20009 -27.78744 -27.17106 -25.02077 -24.33310 -22.84424 -22.34497 -21.19497 -20.73729 -19.48396 -18.18317 -17.57020 -17.19622 -16.79459 -16.60153 -16.50628 -16.11116 -15.56574 -15.37638 -14.97672 -14.76545 -14.51611 -14.28502 -14.18077 -13.81045 -13.46548 -13.42595 -13.19565 -13.01121 -12.93583 -12.81016 -12.74233 -12.57303 -12.46580 -12.28157 -12.20383 -11.89429 -11.81919 -11.65638 -11.51572 -11.33829 -11.06966 -10.92212 -10.57885 -9.96289 -9.45782 -9.38174 -8.66516 -6.38579 0.40840 1.01291 1.35412 1.47091 1.49869 2.14033 2.19507 2.26889 2.79856 3.41956 3.61439 3.69867 3.75959 3.93306 4.05879 4.09955 4.19961 4.32761 4.41781 4.44928 4.58902 4.63631 4.68828 4.76273 4.82755 4.90711 4.95524 4.99567 5.00885 5.08505 5.09655 5.16115 5.19599 5.23751 5.31660 5.41433 5.45870 5.47241 5.52577 5.62536 5.87209 5.93466 6.05120 6.28870 6.53061 6.72499 6.79544 6.87803 6.94607 7.40020 8.30078 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.020418 B = 0.003539 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.987558 B = 7909.741763 C = 8584.336109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.108 3.892 4 H 0.076 0.924 5 N -0.707 5.707 6 C 0.562 3.438 7 O -0.576 6.576 8 C -0.140 4.140 9 C -0.199 4.199 10 C -0.097 4.097 11 C -0.219 4.219 12 C 0.067 3.933 13 C -0.500 4.500 14 H 0.083 0.917 15 C 0.030 3.970 16 N -0.825 5.825 17 Si 0.983 3.017 18 H -0.253 1.253 19 H -0.272 1.272 20 H -0.261 1.261 21 C -0.129 4.129 22 C 0.117 3.883 23 H 0.093 0.907 24 O -0.561 6.561 25 C -0.117 4.117 26 C -0.155 4.155 27 C -0.139 4.139 28 H 0.061 0.939 29 H 0.025 0.975 30 H 0.038 0.962 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.410 0.590 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.107 0.893 37 H 0.286 0.714 38 H 0.099 0.901 39 H 0.386 0.614 40 H 0.093 0.907 41 H 0.048 0.952 42 H 0.051 0.949 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.602 -11.207 -5.882 18.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C 0.003 3.997 4 H 0.094 0.906 5 N -0.359 5.359 6 C 0.352 3.648 7 O -0.457 6.457 8 C -0.143 4.143 9 C -0.219 4.219 10 C -0.114 4.114 11 C -0.239 4.239 12 C 0.065 3.935 13 C -0.529 4.529 14 H 0.101 0.899 15 C -0.185 4.185 16 N -0.450 5.450 17 Si 0.803 3.197 18 H -0.177 1.177 19 H -0.196 1.196 20 H -0.185 1.185 21 C -0.149 4.149 22 C 0.057 3.943 23 H 0.111 0.889 24 O -0.369 6.369 25 C -0.136 4.136 26 C -0.212 4.212 27 C -0.196 4.196 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.118 0.882 32 H 0.100 0.900 33 H 0.247 0.753 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.237 0.763 40 H 0.111 0.889 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.349 -10.592 -6.645 18.290 hybrid contribution -1.267 0.194 0.044 1.283 sum 12.081 -10.398 -6.601 17.252 Atomic orbital electron populations 1.21717 0.96877 1.00487 1.00891 1.21979 0.95444 0.95505 1.03867 1.21936 0.96458 0.94296 0.86990 0.90582 1.45765 1.15575 1.57282 1.17321 1.18573 0.81829 0.77190 0.87250 1.90676 1.52750 1.60862 1.41396 1.19861 0.96666 1.03348 0.94413 1.20840 0.99602 1.07911 0.93548 1.20908 0.95911 0.97206 0.97421 1.21401 0.95135 1.07578 0.99766 1.17947 0.93533 0.90243 0.91766 1.19834 1.02256 1.35972 0.94818 0.89884 1.26841 1.05185 0.92481 0.93976 1.69885 1.39662 1.32953 1.02529 0.85246 0.76000 0.79743 0.78723 1.17661 1.19610 1.18522 1.21420 0.95704 0.98788 0.99001 1.22113 0.88583 0.95755 0.87885 0.88906 1.86565 1.71961 1.25905 1.52470 1.21764 0.97520 1.00938 0.93395 1.21920 1.00450 0.99962 0.98890 1.21728 0.93598 1.01994 1.02298 0.92015 0.95580 0.94286 0.88235 0.90006 0.75253 0.85066 0.84591 0.87445 0.90340 0.88291 0.76340 0.88890 0.93298 0.92946 0.90891 0.91818 0.91599 0.93314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 8.51 71.98 0.61 -3.65 16 2 C -0.13 -2.77 4.89 30.60 0.15 -2.62 16 3 C 0.11 2.71 1.91 44.99 0.09 2.79 16 4 H 0.08 2.30 5.61 -2.39 -0.01 2.29 16 5 N -0.71 -22.36 4.96 -445.37 -2.21 -24.57 16 6 C 0.56 24.43 6.34 86.80 0.55 24.98 16 7 O -0.58 -28.82 13.47 -3.87 -0.05 -28.87 16 8 C -0.14 -6.70 5.87 -20.13 -0.12 -6.82 16 9 C -0.20 -8.10 9.55 22.70 0.22 -7.88 16 10 C -0.10 -3.95 10.01 22.18 0.22 -3.72 16 11 C -0.22 -10.47 9.78 22.77 0.22 -10.25 16 12 C 0.07 3.72 5.57 -21.32 -0.12 3.60 16 13 C -0.50 -27.60 9.05 23.47 0.21 -27.39 16 14 H 0.08 4.33 7.90 -2.91 -0.02 4.30 16 15 C 0.03 1.59 5.14 85.25 0.44 2.03 16 16 N -0.82 -46.46 10.97 21.82 0.24 -46.23 16 17 Si 0.98 40.08 29.59 68.60 2.03 42.11 16 18 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 19 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 20 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 21 C -0.13 -7.22 8.23 23.01 0.19 -7.03 16 22 C 0.12 2.19 2.45 30.59 0.07 2.27 16 23 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 24 O -0.56 -9.64 12.30 -148.98 -1.83 -11.47 16 25 C -0.12 -1.69 2.45 -10.79 -0.03 -1.72 16 26 C -0.15 -2.55 8.85 71.98 0.64 -1.91 16 27 C -0.14 -1.81 9.05 71.98 0.65 -1.16 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.03 0.97 5.65 -2.39 -0.01 0.96 16 30 H 0.04 1.30 7.84 -2.39 -0.02 1.28 16 31 H 0.10 1.53 6.34 -2.39 -0.02 1.52 16 32 H 0.08 1.47 7.00 -2.39 -0.02 1.46 16 33 H 0.41 11.49 6.40 -92.71 -0.59 10.90 16 34 H 0.13 4.21 6.38 -2.91 -0.02 4.19 16 35 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16 36 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 37 H 0.29 14.89 8.30 -92.71 -0.77 14.12 16 38 H 0.10 6.17 5.76 -2.91 -0.02 6.15 16 39 H 0.39 4.29 7.31 -74.06 -0.54 3.75 16 40 H 0.09 1.07 6.46 -2.39 -0.02 1.06 16 41 H 0.05 0.96 6.32 -2.38 -0.02 0.95 16 42 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.06 0.82 7.68 -2.39 -0.02 0.80 16 45 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -68.68 360.19 2.04 -66.64 By element: Atomic # 1 Polarization: 41.01 SS G_CDS: -0.13 Total: 40.88 kcal Atomic # 6 Polarization: -42.48 SS G_CDS: 4.00 Total: -38.48 kcal Atomic # 7 Polarization: -68.83 SS G_CDS: -1.97 Total: -70.80 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -1.88 Total: -40.35 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -68.68 2.04 -66.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412757193.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.727 kcal (2) G-P(sol) polarization free energy of solvation -68.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds