Wall clock time and date at job start Fri Apr 10 2020 21:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47061 * 2 1 4 4 H 1.08998 * 109.47385 * 54.99635 * 3 2 1 5 5 N 1.46508 * 109.46766 * 294.99704 * 3 2 1 6 6 C 1.34779 * 119.99377 * 85.00496 * 5 3 2 7 7 O 1.21546 * 120.00492 * 359.97438 * 6 5 3 8 8 C 1.47888 * 119.99588 * 179.97438 * 6 5 3 9 9 C 1.39919 * 120.02408 * 359.72430 * 8 6 5 10 10 C 1.38328 * 120.35816 * 179.71887 * 9 8 6 11 11 C 1.37761 * 120.41018 * 0.55729 * 10 9 8 12 12 C 1.40746 * 120.03874 * 359.72079 * 11 10 9 13 13 C 1.41443 * 120.17942 * 180.02562 * 12 11 10 14 14 H 1.07995 * 119.99728 * 24.43149 * 13 12 11 15 15 C 1.39933 * 120.00051 * 204.43227 * 13 12 11 16 16 N 1.30832 * 120.00180 * 17.89133 * 15 13 12 17 17 Si 1.86800 * 120.00094 * 197.88911 * 15 13 12 18 18 H 1.48499 * 109.46620 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47210 * 120.00148 * 17 15 13 20 20 H 1.48497 * 109.47242 * 240.00499 * 17 15 13 21 21 C 1.38994 * 120.02543 * 179.97438 * 8 6 5 22 22 C 1.53006 * 109.46996 * 175.00316 * 3 2 1 23 23 H 1.09001 * 109.46870 * 299.99602 * 22 3 2 24 24 O 1.42892 * 109.47149 * 59.99545 * 22 3 2 25 25 C 1.52994 * 109.46622 * 179.97438 * 22 3 2 26 26 C 1.52999 * 109.47222 * 60.00000 * 25 22 3 27 27 C 1.53006 * 109.46729 * 179.97438 * 25 22 3 28 28 H 1.09000 * 109.47339 * 300.00227 * 1 2 3 29 29 H 1.09002 * 109.47416 * 60.00528 * 1 2 3 30 30 H 1.09003 * 109.47209 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47302 * 120.00238 * 2 1 3 32 32 H 1.09004 * 109.47012 * 240.00151 * 2 1 3 33 33 H 0.96996 * 120.00017 * 265.00179 * 5 3 2 34 34 H 1.07997 * 119.82117 * 359.97435 * 9 8 6 35 35 H 1.08000 * 119.79663 * 180.25768 * 10 9 8 36 36 H 1.08003 * 119.97958 * 179.74241 * 11 10 9 37 37 H 0.97000 * 120.00157 * 179.97438 * 16 15 13 38 38 H 1.07998 * 120.19943 * 359.97438 * 21 8 6 39 39 H 0.96711 * 114.00036 * 60.00558 * 24 22 3 40 40 H 1.09001 * 109.47380 * 299.99543 * 25 22 3 41 41 H 1.09007 * 109.47447 * 179.97438 * 26 25 22 42 42 H 1.09000 * 109.47057 * 299.99736 * 26 25 22 43 43 H 1.09001 * 109.47317 * 59.99504 * 26 25 22 44 44 H 1.09001 * 109.46757 * 60.00328 * 27 25 22 45 45 H 1.09003 * 109.47233 * 180.02562 * 27 25 22 46 46 H 1.08991 * 109.47154 * 300.00226 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 7 1.6524 2.0974 -1.2519 6 6 0.4351 2.6643 -1.3670 7 8 -0.3413 2.6319 -0.4324 8 6 0.0440 3.3259 -2.6305 9 6 0.9395 3.3687 -3.7047 10 6 0.5788 3.9806 -4.8917 11 6 -0.6615 4.5649 -5.0262 12 6 -1.5734 4.5369 -3.9545 13 6 -2.8479 5.1354 -4.0896 14 1 -3.2856 5.2584 -5.0691 15 6 -3.5414 5.5683 -2.9539 16 7 -2.9025 5.7493 -1.8266 17 14 -5.3795 5.8878 -3.0474 18 1 -5.8607 5.6100 -4.4245 19 1 -6.0856 5.0006 -2.0884 20 1 -5.6536 7.3062 -2.7035 21 6 -1.2114 3.9103 -2.7500 22 6 3.5649 1.4443 0.1256 23 1 3.8532 0.9570 1.0571 24 8 4.1346 0.7376 -0.9779 25 6 4.0748 2.8868 0.1250 26 6 3.4648 3.6439 1.3063 27 6 5.5996 2.8886 0.2513 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.2719 2.1230 -1.9979 34 1 1.9161 2.9178 -3.6081 35 1 1.2756 4.0047 -5.7165 36 1 -0.9343 5.0444 -5.9547 37 1 -3.3833 6.0498 -1.0395 38 1 -1.9045 3.8829 -1.9221 39 1 3.9190 1.1165 -1.8412 40 1 3.7865 3.3737 -0.8066 41 1 3.8284 4.6715 1.3061 42 1 2.3785 3.6426 1.2168 43 1 3.7531 3.1570 2.2379 44 1 6.0345 2.3491 -0.5901 45 1 5.9630 3.9163 0.2513 46 1 5.8876 2.4019 1.1830 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412757195.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:35:25 Heat of formation + Delta-G solvation = -92.365880 kcal Electronic energy + Delta-G solvation = -25950.495756 eV Core-core repulsion = 22417.796891 eV Total energy + Delta-G solvation = -3532.698865 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.10526 -38.29080 -36.96338 -34.51908 -34.29525 -33.79196 -32.14151 -30.00418 -29.44747 -28.15330 -26.95793 -25.33986 -23.87385 -22.80810 -21.05369 -20.66293 -20.31965 -19.58655 -17.92007 -17.02149 -16.20899 -15.79502 -15.32338 -15.10863 -14.90907 -14.72440 -14.40676 -13.90093 -13.75498 -13.23325 -13.02829 -12.97506 -12.68507 -12.54232 -12.44521 -12.27521 -12.13313 -11.69077 -11.54691 -11.50415 -11.25639 -11.17517 -11.10973 -10.96918 -10.76729 -10.71890 -10.54408 -10.42470 -10.02620 -9.83580 -9.71264 -9.24655 -9.01242 -8.59835 -7.65960 -7.55091 -6.83330 -4.44326 2.18591 2.78086 3.06228 3.10758 3.12748 3.57588 3.84464 3.89988 4.18706 4.49097 4.60424 4.71836 4.85228 5.20292 5.22763 5.30382 5.46183 5.52725 5.55461 5.58144 5.60892 5.73220 5.77387 5.86989 5.93767 6.01515 6.05762 6.09277 6.18286 6.21984 6.22970 6.28504 6.43087 6.68738 6.73483 6.84730 6.96116 6.98929 7.18283 7.35379 7.44546 7.66446 7.72449 7.89245 8.04931 8.16014 8.47880 8.77644 8.80520 8.93754 10.11270 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.017737 B = 0.003902 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.267638 B = 7174.317122 C = 7531.070199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.112 3.888 4 H 0.097 0.903 5 N -0.730 5.730 6 C 0.567 3.433 7 O -0.537 6.537 8 C -0.128 4.128 9 C -0.219 4.219 10 C -0.097 4.097 11 C -0.213 4.213 12 C 0.099 3.901 13 C -0.459 4.459 14 H 0.081 0.919 15 C 0.074 3.926 16 N -0.783 5.783 17 Si 0.909 3.091 18 H -0.260 1.260 19 H -0.270 1.270 20 H -0.274 1.274 21 C -0.092 4.092 22 C 0.106 3.894 23 H 0.107 0.893 24 O -0.555 6.555 25 C -0.128 4.128 26 C -0.150 4.150 27 C -0.141 4.141 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.392 0.608 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.284 0.716 38 H 0.134 0.866 39 H 0.371 0.629 40 H 0.077 0.923 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.052 0.948 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.234 -6.116 4.101 13.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C 0.006 3.994 4 H 0.115 0.885 5 N -0.385 5.385 6 C 0.358 3.642 7 O -0.415 6.415 8 C -0.132 4.132 9 C -0.239 4.239 10 C -0.115 4.115 11 C -0.233 4.233 12 C 0.096 3.904 13 C -0.488 4.488 14 H 0.099 0.901 15 C -0.145 4.145 16 N -0.407 5.407 17 Si 0.733 3.267 18 H -0.183 1.183 19 H -0.195 1.195 20 H -0.199 1.199 21 C -0.112 4.112 22 C 0.046 3.954 23 H 0.125 0.875 24 O -0.360 6.360 25 C -0.147 4.147 26 C -0.207 4.207 27 C -0.199 4.199 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.227 0.773 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.152 0.848 39 H 0.218 0.782 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.874 -6.424 5.527 13.785 hybrid contribution -0.670 0.668 -0.758 1.212 sum 10.204 -5.755 4.769 12.648 Atomic orbital electron populations 1.21822 0.94800 1.00151 1.03569 1.21838 0.96921 0.95712 1.01974 1.21726 0.94442 0.93987 0.89201 0.88535 1.45914 1.17580 1.59300 1.15660 1.18741 0.80414 0.76732 0.88330 1.90707 1.51100 1.59085 1.40612 1.19487 0.97171 1.04016 0.92492 1.20301 0.98414 1.10432 0.94790 1.20431 0.96251 0.98838 0.96024 1.21100 0.94460 1.07617 1.00080 1.17608 0.92450 0.89517 0.90803 1.19630 1.00805 1.34261 0.94137 0.90055 1.25958 1.00760 0.93094 0.94713 1.69797 1.37810 1.31369 1.01714 0.86249 0.82099 0.78608 0.79769 1.18318 1.19538 1.19898 1.21637 0.94456 0.95814 0.99337 1.22346 0.90511 0.91809 0.90728 0.87502 1.86577 1.76045 1.56654 1.16732 1.21795 0.96295 0.96039 1.00559 1.21849 1.01652 1.00055 0.97136 1.21757 0.94699 1.01434 1.01986 0.92386 0.91847 0.94051 0.91903 0.91581 0.77261 0.89466 0.88961 0.88668 0.90500 0.84841 0.78190 0.90471 0.92412 0.91718 0.92728 0.92139 0.92846 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.51 37.16 0.32 -1.96 16 2 C -0.13 -1.64 5.39 -26.73 -0.14 -1.79 16 3 C 0.11 1.46 1.74 -67.92 -0.12 1.34 16 4 H 0.10 1.44 5.86 -51.93 -0.30 1.13 16 5 N -0.73 -10.90 4.25 -54.73 -0.23 -11.14 16 6 C 0.57 11.48 6.34 -12.31 -0.08 11.40 16 7 O -0.54 -12.39 13.47 5.32 0.07 -12.32 16 8 C -0.13 -2.90 5.87 -105.04 -0.62 -3.52 16 9 C -0.22 -4.41 9.55 -38.92 -0.37 -4.78 16 10 C -0.10 -2.02 10.01 -39.72 -0.40 -2.41 16 11 C -0.21 -4.96 9.78 -38.81 -0.38 -5.34 16 12 C 0.10 2.57 5.57 -106.87 -0.60 1.97 16 13 C -0.46 -11.93 9.05 -37.73 -0.34 -12.27 16 14 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 15 C 0.07 1.84 5.14 -17.34 -0.09 1.76 16 16 N -0.78 -20.43 10.96 55.55 0.61 -19.82 16 17 Si 0.91 18.58 29.60 -169.99 -5.03 13.55 16 18 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 C -0.09 -2.40 8.24 -38.44 -0.32 -2.71 16 22 C 0.11 1.12 2.37 -26.73 -0.06 1.06 16 23 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 24 O -0.56 -5.87 12.08 -35.23 -0.43 -6.30 16 25 C -0.13 -1.34 2.53 -90.62 -0.23 -1.57 16 26 C -0.15 -1.66 8.84 37.16 0.33 -1.33 16 27 C -0.14 -1.31 9.05 37.16 0.34 -0.98 16 28 H 0.06 0.96 7.84 -51.93 -0.41 0.55 16 29 H 0.06 1.18 5.64 -51.93 -0.29 0.88 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.86 7.84 -51.93 -0.41 0.45 16 33 H 0.39 5.04 4.95 -40.82 -0.20 4.83 16 34 H 0.09 1.41 6.38 -52.49 -0.33 1.08 16 35 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.10 2.08 8.06 -52.48 -0.42 1.65 16 37 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 38 H 0.13 3.76 5.74 -52.49 -0.30 3.46 16 39 H 0.37 3.20 7.51 45.56 0.34 3.54 16 40 H 0.08 0.89 7.44 -51.93 -0.39 0.50 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.86 6.43 -51.93 -0.33 0.53 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.56 7.68 -51.93 -0.40 0.16 16 45 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 362.30 15.07 5.46 5.46 Total: -1.00 -28.48 362.30 -8.69 -37.17 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -6.38 Total: 14.53 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -2.76 Total: -21.14 kcal Atomic # 7 Polarization: -31.33 SS G_CDS: 0.38 Total: -30.96 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.35 Total: -18.62 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.48 -8.69 -37.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412757195.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.192 kcal (2) G-P(sol) polarization free energy of solvation -28.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds