Wall clock time and date at job start Fri Apr 10 2020 21:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47061 * 2 1 4 4 H 1.08998 * 109.47385 * 54.99635 * 3 2 1 5 5 N 1.46508 * 109.46766 * 294.99704 * 3 2 1 6 6 C 1.34779 * 119.99377 * 85.00496 * 5 3 2 7 7 O 1.21546 * 120.00492 * 359.97438 * 6 5 3 8 8 C 1.47888 * 119.99588 * 179.97438 * 6 5 3 9 9 C 1.39919 * 120.02408 * 359.72430 * 8 6 5 10 10 C 1.38328 * 120.35816 * 179.71887 * 9 8 6 11 11 C 1.37761 * 120.41018 * 0.55729 * 10 9 8 12 12 C 1.40746 * 120.03874 * 359.72079 * 11 10 9 13 13 C 1.41443 * 120.17942 * 180.02562 * 12 11 10 14 14 H 1.07995 * 119.99728 * 24.43149 * 13 12 11 15 15 C 1.39933 * 120.00051 * 204.43227 * 13 12 11 16 16 N 1.30832 * 120.00180 * 17.89133 * 15 13 12 17 17 Si 1.86800 * 120.00094 * 197.88911 * 15 13 12 18 18 H 1.48499 * 109.46620 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47210 * 120.00148 * 17 15 13 20 20 H 1.48497 * 109.47242 * 240.00499 * 17 15 13 21 21 C 1.38994 * 120.02543 * 179.97438 * 8 6 5 22 22 C 1.53006 * 109.46996 * 175.00316 * 3 2 1 23 23 H 1.09001 * 109.46870 * 299.99602 * 22 3 2 24 24 O 1.42892 * 109.47149 * 59.99545 * 22 3 2 25 25 C 1.52994 * 109.46622 * 179.97438 * 22 3 2 26 26 C 1.52999 * 109.47222 * 60.00000 * 25 22 3 27 27 C 1.53006 * 109.46729 * 179.97438 * 25 22 3 28 28 H 1.09000 * 109.47339 * 300.00227 * 1 2 3 29 29 H 1.09002 * 109.47416 * 60.00528 * 1 2 3 30 30 H 1.09003 * 109.47209 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47302 * 120.00238 * 2 1 3 32 32 H 1.09004 * 109.47012 * 240.00151 * 2 1 3 33 33 H 0.96996 * 120.00017 * 265.00179 * 5 3 2 34 34 H 1.07997 * 119.82117 * 359.97435 * 9 8 6 35 35 H 1.08000 * 119.79663 * 180.25768 * 10 9 8 36 36 H 1.08003 * 119.97958 * 179.74241 * 11 10 9 37 37 H 0.97000 * 120.00157 * 179.97438 * 16 15 13 38 38 H 1.07998 * 120.19943 * 359.97438 * 21 8 6 39 39 H 0.96711 * 114.00036 * 60.00558 * 24 22 3 40 40 H 1.09001 * 109.47380 * 299.99543 * 25 22 3 41 41 H 1.09007 * 109.47447 * 179.97438 * 26 25 22 42 42 H 1.09000 * 109.47057 * 299.99736 * 26 25 22 43 43 H 1.09001 * 109.47317 * 59.99504 * 26 25 22 44 44 H 1.09001 * 109.46757 * 60.00328 * 27 25 22 45 45 H 1.09003 * 109.47233 * 180.02562 * 27 25 22 46 46 H 1.08991 * 109.47154 * 300.00226 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 7 1.6524 2.0974 -1.2519 6 6 0.4351 2.6643 -1.3670 7 8 -0.3413 2.6319 -0.4324 8 6 0.0440 3.3259 -2.6305 9 6 0.9395 3.3687 -3.7047 10 6 0.5788 3.9806 -4.8917 11 6 -0.6615 4.5649 -5.0262 12 6 -1.5734 4.5369 -3.9545 13 6 -2.8479 5.1354 -4.0896 14 1 -3.2856 5.2584 -5.0691 15 6 -3.5414 5.5683 -2.9539 16 7 -2.9025 5.7493 -1.8266 17 14 -5.3795 5.8878 -3.0474 18 1 -5.8607 5.6100 -4.4245 19 1 -6.0856 5.0006 -2.0884 20 1 -5.6536 7.3062 -2.7035 21 6 -1.2114 3.9103 -2.7500 22 6 3.5649 1.4443 0.1256 23 1 3.8532 0.9570 1.0571 24 8 4.1346 0.7376 -0.9779 25 6 4.0748 2.8868 0.1250 26 6 3.4648 3.6439 1.3063 27 6 5.5996 2.8886 0.2513 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.2719 2.1230 -1.9979 34 1 1.9161 2.9178 -3.6081 35 1 1.2756 4.0047 -5.7165 36 1 -0.9343 5.0444 -5.9547 37 1 -3.3833 6.0498 -1.0395 38 1 -1.9045 3.8829 -1.9221 39 1 3.9190 1.1165 -1.8412 40 1 3.7865 3.3737 -0.8066 41 1 3.8284 4.6715 1.3061 42 1 2.3785 3.6426 1.2168 43 1 3.7531 3.1570 2.2379 44 1 6.0345 2.3491 -0.5901 45 1 5.9630 3.9163 0.2513 46 1 5.8876 2.4019 1.1830 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412757195.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:35:24 Heat of formation + Delta-G solvation = -109.906435 kcal Electronic energy + Delta-G solvation = -25951.256371 eV Core-core repulsion = 22417.796891 eV Total energy + Delta-G solvation = -3533.459480 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.42905 -39.63437 -38.60002 -35.77739 -35.59042 -35.12611 -33.56213 -31.70681 -31.23123 -29.23568 -27.82303 -27.18405 -24.99923 -24.32045 -22.81440 -21.79154 -21.55721 -20.92863 -19.59716 -18.28116 -17.66226 -17.15778 -16.66145 -16.50961 -16.37952 -16.03453 -15.65378 -15.36583 -14.99555 -14.74751 -14.55860 -14.28295 -14.20791 -13.79017 -13.45178 -13.43451 -13.29566 -13.02465 -12.94831 -12.79904 -12.57542 -12.56013 -12.47340 -12.30379 -12.18486 -11.88946 -11.84333 -11.76571 -11.50967 -11.40798 -11.08251 -10.79455 -10.65683 -9.95795 -9.45559 -9.37161 -8.67452 -6.38457 0.41921 1.01020 1.35356 1.45722 1.51217 2.14847 2.19383 2.23863 2.79793 3.33184 3.56667 3.70875 3.80004 4.00457 4.06810 4.16834 4.22221 4.33449 4.42642 4.48578 4.58737 4.63868 4.71131 4.79374 4.81290 4.91920 4.94880 4.96926 5.01529 5.06259 5.08905 5.19237 5.21892 5.24693 5.32215 5.39165 5.44763 5.45745 5.52625 5.60174 5.87416 5.93656 6.06075 6.29780 6.51668 6.67966 6.73100 6.88273 6.95123 7.39927 8.29255 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.017737 B = 0.003902 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.267638 B = 7174.317122 C = 7531.070199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.120 4.120 3 C 0.111 3.889 4 H 0.078 0.922 5 N -0.705 5.705 6 C 0.566 3.434 7 O -0.574 6.574 8 C -0.138 4.138 9 C -0.197 4.197 10 C -0.096 4.096 11 C -0.220 4.220 12 C 0.067 3.933 13 C -0.499 4.499 14 H 0.082 0.918 15 C 0.032 3.968 16 N -0.824 5.824 17 Si 0.980 3.020 18 H -0.252 1.252 19 H -0.271 1.271 20 H -0.264 1.264 21 C -0.131 4.131 22 C 0.120 3.880 23 H 0.123 0.877 24 O -0.556 6.556 25 C -0.125 4.125 26 C -0.149 4.149 27 C -0.136 4.136 28 H 0.038 0.962 29 H 0.028 0.972 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.405 0.595 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.105 0.895 37 H 0.286 0.714 38 H 0.098 0.902 39 H 0.380 0.620 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.035 0.965 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.125 -7.414 3.386 16.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.158 4.158 3 C 0.006 3.994 4 H 0.096 0.904 5 N -0.359 5.359 6 C 0.356 3.644 7 O -0.454 6.454 8 C -0.141 4.141 9 C -0.217 4.217 10 C -0.114 4.114 11 C -0.240 4.240 12 C 0.065 3.935 13 C -0.528 4.528 14 H 0.100 0.900 15 C -0.183 4.183 16 N -0.450 5.450 17 Si 0.800 3.200 18 H -0.175 1.175 19 H -0.196 1.196 20 H -0.188 1.188 21 C -0.152 4.152 22 C 0.061 3.939 23 H 0.141 0.859 24 O -0.362 6.362 25 C -0.144 4.144 26 C -0.206 4.206 27 C -0.193 4.193 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.243 0.757 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.124 0.876 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.229 0.771 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.822 -7.736 4.779 16.545 hybrid contribution -1.363 0.978 -0.569 1.771 sum 12.459 -6.758 4.210 14.786 Atomic orbital electron populations 1.21754 0.97037 1.00275 1.00947 1.21813 0.94694 0.95695 1.03580 1.21895 0.96543 0.93591 0.87341 0.90447 1.45640 1.15726 1.57602 1.16919 1.18511 0.81688 0.77042 0.87187 1.90693 1.52654 1.60555 1.41530 1.19840 0.96532 1.03321 0.94427 1.20847 0.99506 1.08058 0.93300 1.20921 0.95774 0.97214 0.97480 1.21400 0.95290 1.07655 0.99642 1.17943 0.93476 0.90273 0.91822 1.19884 1.02070 1.36204 0.94665 0.90018 1.26806 1.05146 0.92381 0.94001 1.69893 1.39549 1.33071 1.02504 0.85193 0.76203 0.78715 0.79854 1.17505 1.19578 1.18825 1.21435 0.95906 0.98892 0.98942 1.22232 0.87933 0.92145 0.91617 0.85932 1.86582 1.75758 1.56692 1.17196 1.21765 0.97367 0.95626 0.99642 1.21835 0.99737 1.00587 0.98478 1.21708 0.93215 1.01823 1.02592 0.94258 0.95257 0.92482 0.89428 0.90663 0.75658 0.84503 0.84474 0.87647 0.90376 0.88395 0.77080 0.91444 0.92400 0.94607 0.91090 0.91742 0.92620 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.46 8.51 71.98 0.61 -3.85 16 2 C -0.12 -2.87 5.39 30.60 0.16 -2.70 16 3 C 0.11 2.73 1.74 44.99 0.08 2.80 16 4 H 0.08 2.29 5.86 -2.39 -0.01 2.28 16 5 N -0.70 -20.04 4.25 -445.34 -1.89 -21.93 16 6 C 0.57 23.30 6.34 86.80 0.55 23.85 16 7 O -0.57 -27.95 13.47 -3.86 -0.05 -28.00 16 8 C -0.14 -6.30 5.87 -20.13 -0.12 -6.42 16 9 C -0.20 -7.41 9.55 22.70 0.22 -7.20 16 10 C -0.10 -3.71 10.01 22.18 0.22 -3.49 16 11 C -0.22 -10.22 9.78 22.77 0.22 -9.99 16 12 C 0.07 3.63 5.57 -21.32 -0.12 3.51 16 13 C -0.50 -27.27 9.05 23.47 0.21 -27.06 16 14 H 0.08 4.24 7.91 -2.91 -0.02 4.22 16 15 C 0.03 1.65 5.14 85.25 0.44 2.09 16 16 N -0.82 -46.00 10.96 21.82 0.24 -45.76 16 17 Si 0.98 39.83 29.60 68.60 2.03 41.86 16 18 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 19 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 20 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 21 C -0.13 -7.19 8.24 23.01 0.19 -7.00 16 22 C 0.12 2.17 2.37 30.59 0.07 2.24 16 23 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 24 O -0.56 -9.41 12.08 -148.98 -1.80 -11.21 16 25 C -0.13 -2.29 2.53 -10.79 -0.03 -2.32 16 26 C -0.15 -3.12 8.84 71.98 0.64 -2.48 16 27 C -0.14 -2.06 9.05 71.98 0.65 -1.41 16 28 H 0.04 1.34 7.84 -2.39 -0.02 1.32 16 29 H 0.03 1.10 5.64 -2.39 -0.01 1.09 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.07 1.71 7.84 -2.38 -0.02 1.69 16 33 H 0.41 9.09 4.95 -92.71 -0.46 8.63 16 34 H 0.14 3.72 6.38 -2.91 -0.02 3.70 16 35 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 36 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 37 H 0.29 14.67 8.30 -92.71 -0.77 13.90 16 38 H 0.10 6.02 5.74 -2.91 -0.02 6.00 16 39 H 0.38 4.82 7.51 -74.05 -0.56 4.27 16 40 H 0.07 1.37 7.44 -2.39 -0.02 1.35 16 41 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.03 0.95 6.43 -2.39 -0.02 0.94 16 43 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.06 0.95 7.68 -2.39 -0.02 0.93 16 45 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -67.59 362.30 2.51 -65.08 By element: Atomic # 1 Polarization: 39.41 SS G_CDS: -0.02 Total: 39.39 kcal Atomic # 6 Polarization: -43.43 SS G_CDS: 4.00 Total: -39.43 kcal Atomic # 7 Polarization: -66.03 SS G_CDS: -1.65 Total: -67.69 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -1.85 Total: -39.21 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Total: -67.59 2.51 -65.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412757195.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.823 kcal (2) G-P(sol) polarization free energy of solvation -67.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds