Wall clock time and date at job start Fri Apr 10 2020 21:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47532 * 2 1 4 4 H 1.09003 * 109.46510 * 56.12985 * 3 2 1 5 5 N 1.46496 * 109.47058 * 296.13135 * 3 2 1 6 6 C 1.34779 * 119.99872 * 84.99319 * 5 3 2 7 7 O 1.21550 * 120.00241 * 0.02562 * 6 5 3 8 8 C 1.47888 * 120.00141 * 179.97438 * 6 5 3 9 9 C 1.39923 * 120.02073 * 359.73621 * 8 6 5 10 10 C 1.38328 * 120.35248 * 179.71187 * 9 8 6 11 11 C 1.37748 * 120.41688 * 0.56161 * 10 9 8 12 12 C 1.40753 * 120.03675 * 359.71311 * 11 10 9 13 13 C 1.41438 * 120.17902 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00034 * 26.59226 * 13 12 11 15 15 C 1.39939 * 120.00079 * 206.59683 * 13 12 11 16 16 N 1.30826 * 119.99885 * 12.59521 * 15 13 12 17 17 Si 1.86801 * 119.99905 * 192.59319 * 15 13 12 18 18 H 1.48499 * 109.47123 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.46969 * 119.99835 * 17 15 13 20 20 H 1.48493 * 109.47227 * 239.99816 * 17 15 13 21 21 C 1.38990 * 120.02765 * 180.02562 * 8 6 5 22 22 C 1.52998 * 109.47447 * 176.13022 * 3 2 1 23 23 H 1.09001 * 109.47228 * 177.71923 * 22 3 2 24 24 O 1.42898 * 109.47239 * 57.71895 * 22 3 2 25 25 C 1.53002 * 109.47349 * 297.72229 * 22 3 2 26 26 C 1.52997 * 109.47577 * 177.44208 * 25 22 3 27 27 C 1.53003 * 109.46663 * 297.44393 * 25 22 3 28 28 H 1.09006 * 109.47330 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46924 * 299.99738 * 1 2 3 30 30 H 1.09001 * 109.47053 * 59.99764 * 1 2 3 31 31 H 1.09003 * 109.47511 * 239.99783 * 2 1 3 32 32 H 1.09001 * 109.47053 * 120.00236 * 2 1 3 33 33 H 0.96994 * 120.00177 * 265.00167 * 5 3 2 34 34 H 1.08000 * 119.82273 * 359.96641 * 9 8 6 35 35 H 1.08009 * 119.79223 * 180.25304 * 10 9 8 36 36 H 1.08000 * 119.98530 * 179.74424 * 11 10 9 37 37 H 0.97004 * 119.99774 * 180.02562 * 16 15 13 38 38 H 1.07997 * 120.20358 * 359.97438 * 21 8 6 39 39 H 0.96706 * 114.00325 * 300.00030 * 24 22 3 40 40 H 1.09004 * 109.47080 * 57.43740 * 25 22 3 41 41 H 1.09008 * 109.46865 * 294.99535 * 26 25 22 42 42 H 1.09000 * 109.46762 * 54.98826 * 26 25 22 43 43 H 1.08997 * 109.47085 * 174.99679 * 26 25 22 44 44 H 1.08996 * 109.47852 * 60.00005 * 27 25 22 45 45 H 1.09007 * 109.47013 * 179.97438 * 27 25 22 46 46 H 1.09004 * 109.46839 * 299.99494 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6211 1.9759 0.8533 5 7 1.6293 2.1057 -1.2400 6 6 0.4101 2.6732 -1.3288 7 8 -0.3485 2.6352 -0.3798 8 6 -0.0044 3.3432 -2.5803 9 6 0.8710 3.3930 -3.6708 10 6 0.4882 4.0127 -4.8467 11 6 -0.7541 4.5978 -4.9543 12 6 -1.6461 4.5627 -3.8660 13 6 -2.9226 5.1621 -3.9733 14 1 -3.3937 5.2600 -4.9403 15 6 -3.5753 5.6286 -2.8267 16 7 -2.9194 5.7394 -1.7001 17 14 -5.3830 6.0930 -2.9046 18 1 -5.8903 5.8777 -4.2836 19 1 -6.1525 5.2476 -1.9569 20 1 -5.5432 7.5223 -2.5353 21 6 -1.2614 3.9291 -2.6723 22 6 3.5669 1.4435 0.0973 23 1 3.9329 2.4695 0.0566 24 8 4.1143 0.6989 -0.9926 25 6 3.9942 0.8018 1.4189 26 6 5.5216 0.7450 1.4881 27 6 3.4614 1.6352 2.5862 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.2348 2.1362 -1.9972 34 1 1.8493 2.9416 -3.5953 35 1 1.1696 4.0423 -5.6842 36 1 -1.0442 5.0834 -5.8743 37 1 -3.3719 6.0623 -0.9052 38 1 -1.9387 3.8968 -1.8317 39 1 3.8307 -0.2253 -1.0193 40 1 3.5899 -0.2087 1.4796 41 1 5.8960 0.0795 0.7101 42 1 5.9294 1.7446 1.3383 43 1 5.8273 0.3702 2.4648 44 1 2.3733 1.6757 2.5371 45 1 3.7654 1.1777 3.5278 46 1 3.8658 2.6456 2.5255 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412757200.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:35:37 Heat of formation + Delta-G solvation = -92.347169 kcal Electronic energy + Delta-G solvation = -25632.360367 eV Core-core repulsion = 22099.662314 eV Total energy + Delta-G solvation = -3532.698053 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.03157 -38.42275 -36.94590 -34.49144 -34.36890 -33.71685 -32.05210 -29.99568 -29.39064 -28.16005 -27.03178 -25.28971 -23.89909 -22.87320 -21.33871 -20.88102 -19.90503 -19.40967 -17.76887 -16.93545 -16.16920 -15.89225 -15.54983 -15.27590 -14.92798 -14.55926 -14.43957 -13.87982 -13.73653 -13.19097 -13.10609 -12.97509 -12.63476 -12.53097 -12.46754 -12.31085 -12.15308 -11.92763 -11.62355 -11.45187 -11.35048 -11.13945 -11.09022 -11.03768 -10.72133 -10.64863 -10.50125 -10.41983 -9.97063 -9.95216 -9.67127 -9.24480 -8.94233 -8.53947 -7.60528 -7.47000 -6.73855 -4.41033 2.23360 2.82783 3.08940 3.13785 3.15270 3.61582 3.88792 3.94232 4.25219 4.51618 4.64092 4.67933 4.71571 5.01532 5.08248 5.19406 5.32233 5.44164 5.48705 5.60912 5.62576 5.66093 5.69105 5.75023 5.85776 5.94849 5.96308 6.07701 6.10666 6.13781 6.21520 6.30862 6.34911 6.68520 6.73766 6.94239 7.01546 7.04492 7.24721 7.40941 7.46582 7.72673 7.79120 7.95843 8.15363 8.23113 8.53605 8.83374 8.85647 9.01080 10.19484 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.020757 B = 0.003517 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.605575 B = 7958.725495 C = 8636.523114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.138 4.138 3 C 0.113 3.887 4 H 0.096 0.904 5 N -0.727 5.727 6 C 0.564 3.436 7 O -0.542 6.542 8 C -0.131 4.131 9 C -0.213 4.213 10 C -0.101 4.101 11 C -0.209 4.209 12 C 0.096 3.904 13 C -0.460 4.460 14 H 0.080 0.920 15 C 0.071 3.929 16 N -0.790 5.790 17 Si 0.912 3.088 18 H -0.261 1.261 19 H -0.271 1.271 20 H -0.274 1.274 21 C -0.088 4.088 22 C 0.104 3.896 23 H 0.104 0.896 24 O -0.556 6.556 25 C -0.126 4.126 26 C -0.141 4.141 27 C -0.153 4.153 28 H 0.041 0.959 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.402 0.598 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.282 0.718 38 H 0.138 0.862 39 H 0.372 0.628 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.476 -9.597 5.957 16.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C 0.007 3.993 4 H 0.114 0.886 5 N -0.381 5.381 6 C 0.355 3.645 7 O -0.420 6.420 8 C -0.135 4.135 9 C -0.233 4.233 10 C -0.119 4.119 11 C -0.229 4.229 12 C 0.094 3.906 13 C -0.489 4.489 14 H 0.098 0.902 15 C -0.147 4.147 16 N -0.415 5.415 17 Si 0.736 3.264 18 H -0.184 1.184 19 H -0.197 1.197 20 H -0.199 1.199 21 C -0.108 4.108 22 C 0.044 3.956 23 H 0.122 0.878 24 O -0.362 6.362 25 C -0.145 4.145 26 C -0.198 4.198 27 C -0.210 4.210 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.238 0.762 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.155 0.845 39 H 0.220 0.780 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.174 -8.956 6.767 15.839 hybrid contribution -0.700 -0.182 -0.170 0.743 sum 10.474 -9.139 6.597 15.386 Atomic orbital electron populations 1.21778 0.94282 1.00222 1.03849 1.22010 0.98013 0.96256 1.01347 1.21645 0.94165 0.93783 0.89723 0.88628 1.45916 1.17747 1.58479 1.15963 1.18784 0.80482 0.76862 0.88349 1.90696 1.52512 1.59506 1.39296 1.19524 0.97270 1.04083 0.92588 1.20405 0.98667 1.09617 0.94592 1.20444 0.96247 0.99056 0.96180 1.21140 0.94512 1.07189 1.00032 1.17628 0.92621 0.89558 0.90819 1.19612 1.00964 1.33958 0.94393 0.90189 1.25950 1.00253 0.93726 0.94780 1.69776 1.37322 1.33181 1.01209 0.86203 0.81987 0.78617 0.79589 1.18440 1.19661 1.19947 1.21717 0.94265 0.95237 0.99605 1.22309 0.91210 0.96376 0.85684 0.87848 1.86579 1.73269 1.26767 1.49597 1.21831 0.97002 1.00426 0.95251 1.21738 0.94438 1.02238 1.01397 1.21893 1.01714 1.00063 0.97336 0.93984 0.92130 0.91749 0.92042 0.91430 0.76171 0.89129 0.88925 0.88646 0.90640 0.84494 0.77974 0.90447 0.92174 0.92652 0.92860 0.91826 0.92383 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.49 37.15 0.32 -1.86 16 2 C -0.14 -1.63 4.95 -26.73 -0.13 -1.76 16 3 C 0.11 1.48 1.93 -67.93 -0.13 1.35 16 4 H 0.10 1.44 5.81 -51.93 -0.30 1.14 16 5 N -0.73 -11.86 4.94 -54.74 -0.27 -12.13 16 6 C 0.56 11.99 6.29 -12.31 -0.08 11.91 16 7 O -0.54 -12.84 13.46 5.32 0.07 -12.77 16 8 C -0.13 -3.09 5.87 -105.04 -0.62 -3.71 16 9 C -0.21 -4.53 9.55 -38.92 -0.37 -4.90 16 10 C -0.10 -2.18 10.01 -39.73 -0.40 -2.58 16 11 C -0.21 -5.00 9.78 -38.81 -0.38 -5.38 16 12 C 0.10 2.55 5.57 -106.87 -0.59 1.96 16 13 C -0.46 -12.14 9.07 -37.73 -0.34 -12.49 16 14 H 0.08 2.01 7.88 -52.48 -0.41 1.60 16 15 C 0.07 1.80 5.23 -17.34 -0.09 1.71 16 16 N -0.79 -20.99 10.79 55.55 0.60 -20.39 16 17 Si 0.91 18.91 29.58 -169.99 -5.03 13.89 16 18 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 21 C -0.09 -2.34 8.22 -38.45 -0.32 -2.66 16 22 C 0.10 1.10 2.48 -26.73 -0.07 1.04 16 23 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 24 O -0.56 -5.80 12.20 -35.23 -0.43 -6.23 16 25 C -0.13 -1.08 2.45 -90.62 -0.22 -1.31 16 26 C -0.14 -1.13 8.94 37.16 0.33 -0.80 16 27 C -0.15 -1.36 8.90 37.16 0.33 -1.03 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.99 7.78 -51.93 -0.40 0.58 16 30 H 0.06 1.19 5.67 -51.93 -0.29 0.89 16 31 H 0.06 0.66 6.95 -51.93 -0.36 0.30 16 32 H 0.07 0.65 6.24 -51.93 -0.32 0.33 16 33 H 0.40 6.14 6.30 -40.82 -0.26 5.88 16 34 H 0.09 1.64 6.38 -52.49 -0.33 1.30 16 35 H 0.09 1.71 8.06 -52.48 -0.42 1.28 16 36 H 0.10 2.13 8.06 -52.49 -0.42 1.70 16 37 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 38 H 0.14 3.94 5.70 -52.49 -0.30 3.64 16 39 H 0.37 2.90 7.35 45.56 0.34 3.24 16 40 H 0.08 0.61 6.28 -51.93 -0.33 0.28 16 41 H 0.06 0.48 7.78 -51.92 -0.40 0.08 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.63 6.44 -51.93 -0.33 0.30 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 359.85 15.07 5.42 5.42 Total: -1.00 -29.19 359.85 -8.63 -37.82 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -6.24 Total: 14.89 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -2.76 Total: -20.49 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.33 Total: -32.52 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.36 Total: -19.00 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.19 -8.63 -37.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412757200.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.532 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds