Wall clock time and date at job start Fri Apr 10 2020 21:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47532 * 2 1 4 4 H 1.09003 * 109.46510 * 56.12985 * 3 2 1 5 5 N 1.46496 * 109.47058 * 296.13135 * 3 2 1 6 6 C 1.34779 * 119.99872 * 84.99319 * 5 3 2 7 7 O 1.21550 * 120.00241 * 0.02562 * 6 5 3 8 8 C 1.47888 * 120.00141 * 179.97438 * 6 5 3 9 9 C 1.39923 * 120.02073 * 359.73621 * 8 6 5 10 10 C 1.38328 * 120.35248 * 179.71187 * 9 8 6 11 11 C 1.37748 * 120.41688 * 0.56161 * 10 9 8 12 12 C 1.40753 * 120.03675 * 359.71311 * 11 10 9 13 13 C 1.41438 * 120.17902 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00034 * 26.59226 * 13 12 11 15 15 C 1.39939 * 120.00079 * 206.59683 * 13 12 11 16 16 N 1.30826 * 119.99885 * 12.59521 * 15 13 12 17 17 Si 1.86801 * 119.99905 * 192.59319 * 15 13 12 18 18 H 1.48499 * 109.47123 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.46969 * 119.99835 * 17 15 13 20 20 H 1.48493 * 109.47227 * 239.99816 * 17 15 13 21 21 C 1.38990 * 120.02765 * 180.02562 * 8 6 5 22 22 C 1.52998 * 109.47447 * 176.13022 * 3 2 1 23 23 H 1.09001 * 109.47228 * 177.71923 * 22 3 2 24 24 O 1.42898 * 109.47239 * 57.71895 * 22 3 2 25 25 C 1.53002 * 109.47349 * 297.72229 * 22 3 2 26 26 C 1.52997 * 109.47577 * 177.44208 * 25 22 3 27 27 C 1.53003 * 109.46663 * 297.44393 * 25 22 3 28 28 H 1.09006 * 109.47330 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46924 * 299.99738 * 1 2 3 30 30 H 1.09001 * 109.47053 * 59.99764 * 1 2 3 31 31 H 1.09003 * 109.47511 * 239.99783 * 2 1 3 32 32 H 1.09001 * 109.47053 * 120.00236 * 2 1 3 33 33 H 0.96994 * 120.00177 * 265.00167 * 5 3 2 34 34 H 1.08000 * 119.82273 * 359.96641 * 9 8 6 35 35 H 1.08009 * 119.79223 * 180.25304 * 10 9 8 36 36 H 1.08000 * 119.98530 * 179.74424 * 11 10 9 37 37 H 0.97004 * 119.99774 * 180.02562 * 16 15 13 38 38 H 1.07997 * 120.20358 * 359.97438 * 21 8 6 39 39 H 0.96706 * 114.00325 * 300.00030 * 24 22 3 40 40 H 1.09004 * 109.47080 * 57.43740 * 25 22 3 41 41 H 1.09008 * 109.46865 * 294.99535 * 26 25 22 42 42 H 1.09000 * 109.46762 * 54.98826 * 26 25 22 43 43 H 1.08997 * 109.47085 * 174.99679 * 26 25 22 44 44 H 1.08996 * 109.47852 * 60.00005 * 27 25 22 45 45 H 1.09007 * 109.47013 * 179.97438 * 27 25 22 46 46 H 1.09004 * 109.46839 * 299.99494 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6211 1.9759 0.8533 5 7 1.6293 2.1057 -1.2400 6 6 0.4101 2.6732 -1.3288 7 8 -0.3485 2.6352 -0.3798 8 6 -0.0044 3.3432 -2.5803 9 6 0.8710 3.3930 -3.6708 10 6 0.4882 4.0127 -4.8467 11 6 -0.7541 4.5978 -4.9543 12 6 -1.6461 4.5627 -3.8660 13 6 -2.9226 5.1621 -3.9733 14 1 -3.3937 5.2600 -4.9403 15 6 -3.5753 5.6286 -2.8267 16 7 -2.9194 5.7394 -1.7001 17 14 -5.3830 6.0930 -2.9046 18 1 -5.8903 5.8777 -4.2836 19 1 -6.1525 5.2476 -1.9569 20 1 -5.5432 7.5223 -2.5353 21 6 -1.2614 3.9291 -2.6723 22 6 3.5669 1.4435 0.0973 23 1 3.9329 2.4695 0.0566 24 8 4.1143 0.6989 -0.9926 25 6 3.9942 0.8018 1.4189 26 6 5.5216 0.7450 1.4881 27 6 3.4614 1.6352 2.5862 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.2348 2.1362 -1.9972 34 1 1.8493 2.9416 -3.5953 35 1 1.1696 4.0423 -5.6842 36 1 -1.0442 5.0834 -5.8743 37 1 -3.3719 6.0623 -0.9052 38 1 -1.9387 3.8968 -1.8317 39 1 3.8307 -0.2253 -1.0193 40 1 3.5899 -0.2087 1.4796 41 1 5.8960 0.0795 0.7101 42 1 5.9294 1.7446 1.3383 43 1 5.8273 0.3702 2.4648 44 1 2.3733 1.6757 2.5371 45 1 3.7654 1.1777 3.5278 46 1 3.8658 2.6456 2.5255 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412757200.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:35:34 Heat of formation + Delta-G solvation = -111.059814 kcal Electronic energy + Delta-G solvation = -25633.171809 eV Core-core repulsion = 22099.662314 eV Total energy + Delta-G solvation = -3533.509495 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.35922 -39.74802 -38.65220 -35.78339 -35.55692 -35.12676 -33.43861 -31.73178 -31.23644 -29.21016 -27.78295 -27.17513 -25.01090 -24.33469 -22.83779 -22.35092 -21.19020 -20.72603 -19.48728 -18.17769 -17.56669 -17.19124 -16.77429 -16.61125 -16.50025 -16.12077 -15.54076 -15.38685 -14.97121 -14.75796 -14.51158 -14.29439 -14.17192 -13.78878 -13.48808 -13.42059 -13.19498 -13.01046 -12.92241 -12.80382 -12.75362 -12.57602 -12.46833 -12.26105 -12.17418 -11.88522 -11.80961 -11.65470 -11.51002 -11.32782 -11.11813 -10.91737 -10.57768 -9.96125 -9.44860 -9.36030 -8.62124 -6.39928 0.40635 1.00946 1.36031 1.45892 1.52009 2.14589 2.20075 2.26900 2.81595 3.42959 3.61362 3.69551 3.75292 3.93919 4.06002 4.10268 4.20326 4.33030 4.41632 4.45261 4.58920 4.63489 4.69273 4.76034 4.83150 4.90737 4.95958 5.00097 5.01384 5.09101 5.09973 5.16188 5.19849 5.23855 5.33306 5.41641 5.46138 5.47708 5.53209 5.62662 5.87488 5.93143 6.06975 6.29152 6.54055 6.73012 6.79815 6.88926 6.95023 7.40616 8.33109 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.020757 B = 0.003517 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.605575 B = 7958.725495 C = 8636.523114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.109 3.891 4 H 0.075 0.925 5 N -0.707 5.707 6 C 0.562 3.438 7 O -0.576 6.576 8 C -0.142 4.142 9 C -0.196 4.196 10 C -0.099 4.099 11 C -0.216 4.216 12 C 0.064 3.936 13 C -0.496 4.496 14 H 0.082 0.918 15 C 0.026 3.974 16 N -0.830 5.830 17 Si 0.985 3.015 18 H -0.252 1.252 19 H -0.270 1.270 20 H -0.265 1.265 21 C -0.125 4.125 22 C 0.117 3.883 23 H 0.093 0.907 24 O -0.561 6.561 25 C -0.118 4.118 26 C -0.138 4.138 27 C -0.154 4.154 28 H 0.061 0.939 29 H 0.038 0.962 30 H 0.025 0.975 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.410 0.590 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.108 0.892 37 H 0.285 0.715 38 H 0.103 0.897 39 H 0.386 0.614 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.064 0.936 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.875 -11.226 5.388 18.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C 0.004 3.996 4 H 0.093 0.907 5 N -0.359 5.359 6 C 0.352 3.648 7 O -0.457 6.457 8 C -0.145 4.145 9 C -0.215 4.215 10 C -0.117 4.117 11 C -0.235 4.235 12 C 0.062 3.938 13 C -0.526 4.526 14 H 0.100 0.900 15 C -0.188 4.188 16 N -0.457 5.457 17 Si 0.806 3.194 18 H -0.175 1.175 19 H -0.195 1.195 20 H -0.189 1.189 21 C -0.145 4.145 22 C 0.057 3.943 23 H 0.111 0.889 24 O -0.369 6.369 25 C -0.137 4.137 26 C -0.195 4.195 27 C -0.212 4.212 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.248 0.752 34 H 0.150 0.850 35 H 0.155 0.845 36 H 0.126 0.874 37 H 0.095 0.905 38 H 0.121 0.879 39 H 0.237 0.763 40 H 0.111 0.889 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.091 0.909 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.628 -10.614 6.177 18.345 hybrid contribution -1.257 0.228 -0.023 1.277 sum 12.372 -10.386 6.155 17.286 Atomic orbital electron populations 1.21717 0.96918 1.00472 1.00856 1.21986 0.95390 0.95499 1.03886 1.21899 0.96246 0.94144 0.87310 0.90743 1.45748 1.15819 1.57013 1.17359 1.18572 0.81764 0.77229 0.87267 1.90679 1.53920 1.60924 1.40160 1.19881 0.96688 1.03478 0.94488 1.20865 0.99537 1.07750 0.93376 1.20913 0.95817 0.97421 0.97522 1.21433 0.95243 1.07217 0.99645 1.17980 0.93691 0.90294 0.91815 1.19883 1.02044 1.35641 0.95044 0.89984 1.26851 1.04689 0.93194 0.94022 1.69889 1.39178 1.34628 1.01980 0.85109 0.76014 0.78508 0.79786 1.17536 1.19517 1.18947 1.21508 0.95637 0.98174 0.99224 1.22120 0.88629 0.96449 0.87089 0.88942 1.86566 1.73073 1.27886 1.49358 1.21786 0.97656 1.00748 0.93535 1.21713 0.93514 1.02005 1.02263 1.21908 1.00698 1.00160 0.98405 0.92017 0.94325 0.95608 0.89970 0.88240 0.75221 0.85033 0.84549 0.87395 0.90487 0.87915 0.76347 0.88877 0.91809 0.93370 0.91652 0.93346 0.90891 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.28 8.49 71.98 0.61 -3.67 16 2 C -0.13 -2.77 4.95 30.59 0.15 -2.61 16 3 C 0.11 2.73 1.93 44.99 0.09 2.82 16 4 H 0.07 2.26 5.81 -2.39 -0.01 2.25 16 5 N -0.71 -22.34 4.94 -445.37 -2.20 -24.54 16 6 C 0.56 24.45 6.29 86.80 0.55 25.00 16 7 O -0.58 -28.89 13.46 -3.87 -0.05 -28.95 16 8 C -0.14 -6.82 5.87 -20.13 -0.12 -6.94 16 9 C -0.20 -7.93 9.55 22.70 0.22 -7.71 16 10 C -0.10 -4.03 10.01 22.17 0.22 -3.80 16 11 C -0.22 -10.28 9.78 22.77 0.22 -10.06 16 12 C 0.06 3.56 5.57 -21.32 -0.12 3.44 16 13 C -0.50 -27.46 9.07 23.47 0.21 -27.25 16 14 H 0.08 4.30 7.88 -2.91 -0.02 4.27 16 15 C 0.03 1.39 5.23 85.25 0.45 1.83 16 16 N -0.83 -46.95 10.79 21.82 0.24 -46.71 16 17 Si 0.99 40.27 29.58 68.60 2.03 42.30 16 18 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 19 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 20 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 21 C -0.12 -7.02 8.22 23.01 0.19 -6.83 16 22 C 0.12 2.20 2.48 30.59 0.08 2.27 16 23 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 24 O -0.56 -9.63 12.20 -148.98 -1.82 -11.44 16 25 C -0.12 -1.69 2.45 -10.79 -0.03 -1.72 16 26 C -0.14 -1.77 8.94 71.98 0.64 -1.13 16 27 C -0.15 -2.50 8.90 71.98 0.64 -1.86 16 28 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.04 1.30 7.78 -2.39 -0.02 1.28 16 30 H 0.02 0.96 5.67 -2.39 -0.01 0.94 16 31 H 0.08 1.46 6.95 -2.39 -0.02 1.44 16 32 H 0.10 1.55 6.24 -2.39 -0.01 1.53 16 33 H 0.41 11.47 6.30 -92.71 -0.58 10.89 16 34 H 0.13 4.21 6.38 -2.91 -0.02 4.19 16 35 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 36 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 37 H 0.28 14.82 8.30 -92.71 -0.77 14.05 16 38 H 0.10 6.43 5.70 -2.91 -0.02 6.41 16 39 H 0.39 4.29 7.35 -74.05 -0.54 3.74 16 40 H 0.09 1.07 6.28 -2.39 -0.01 1.06 16 41 H 0.06 0.79 7.78 -2.38 -0.02 0.78 16 42 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 43 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 44 H 0.05 0.94 6.44 -2.39 -0.02 0.92 16 45 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 46 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -68.96 359.85 2.07 -66.89 By element: Atomic # 1 Polarization: 40.80 SS G_CDS: -0.13 Total: 40.68 kcal Atomic # 6 Polarization: -42.22 SS G_CDS: 4.00 Total: -38.22 kcal Atomic # 7 Polarization: -69.29 SS G_CDS: -1.97 Total: -71.26 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -1.87 Total: -40.39 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Total: -68.96 2.07 -66.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412757200.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.166 kcal (2) G-P(sol) polarization free energy of solvation -68.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds