Wall clock time and date at job start Fri Apr 10 2020 21:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46826 * 2 1 4 4 H 1.09001 * 109.47060 * 305.58295 * 3 2 1 5 5 C 1.50701 * 109.47286 * 185.58531 * 3 2 1 6 6 O 1.21281 * 120.00043 * 240.00525 * 5 3 2 7 7 N 1.34779 * 119.99840 * 59.99446 * 5 3 2 8 8 C 1.46502 * 119.99861 * 179.97438 * 7 5 3 9 9 H 1.08996 * 109.47287 * 325.00632 * 8 7 5 10 10 C 1.53003 * 109.46797 * 205.00370 * 8 7 5 11 11 C 1.50700 * 109.47171 * 65.00648 * 10 8 7 12 12 H 1.07999 * 119.99752 * 359.97438 * 11 10 8 13 13 C 1.37878 * 119.99963 * 179.97438 * 11 10 8 14 14 N 1.31516 * 119.99732 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 120.00039 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47482 * 89.99497 * 15 13 11 17 17 H 1.48500 * 109.47280 * 210.00015 * 15 13 11 18 18 H 1.48505 * 109.47192 * 329.99409 * 15 13 11 19 19 C 1.50694 * 109.47022 * 85.00705 * 8 7 5 20 20 C 1.38238 * 119.99947 * 219.99985 * 19 8 7 21 21 C 1.38237 * 119.99807 * 179.97438 * 20 19 8 22 22 C 1.38232 * 120.00219 * 359.97438 * 21 20 19 23 23 C 1.38235 * 120.00080 * 0.02562 * 22 21 20 24 24 C 1.38234 * 119.99953 * 0.06716 * 23 22 21 25 25 C 1.53001 * 109.47169 * 65.58515 * 3 2 1 26 26 H 1.09001 * 109.47139 * 302.53702 * 25 3 2 27 27 C 1.52998 * 109.46934 * 182.53831 * 25 3 2 28 28 O 1.42897 * 109.47078 * 62.53742 * 25 3 2 29 29 H 1.08992 * 109.47221 * 294.81741 * 1 2 3 30 30 H 1.09004 * 109.47322 * 54.82128 * 1 2 3 31 31 H 1.09000 * 109.46502 * 174.81595 * 1 2 3 32 32 H 1.08996 * 109.47352 * 240.00382 * 2 1 3 33 33 H 1.08994 * 109.47379 * 119.99818 * 2 1 3 34 34 H 0.97001 * 120.00304 * 0.02562 * 7 5 3 35 35 H 1.09007 * 109.46770 * 184.99898 * 10 8 7 36 36 H 1.08995 * 109.47112 * 304.99835 * 10 8 7 37 37 H 0.97001 * 119.99457 * 179.97438 * 14 13 11 38 38 H 1.07992 * 119.99951 * 359.97438 * 20 19 8 39 39 H 1.08002 * 119.99940 * 179.97438 * 21 20 19 40 40 H 1.08007 * 120.00085 * 179.71840 * 22 21 20 41 41 H 1.08003 * 120.00411 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.00111 * 179.97438 * 24 23 22 43 43 H 1.09006 * 109.46901 * 64.68173 * 27 25 3 44 44 H 1.09002 * 109.46855 * 184.67225 * 27 25 3 45 45 H 1.08998 * 109.47268 * 304.67725 * 27 25 3 46 46 H 0.96707 * 113.99768 * 60.00147 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5972 1.9844 -0.8358 5 6 3.5406 1.4449 -0.1383 6 8 4.2286 1.9412 0.7284 7 7 4.1180 0.8954 -1.2251 8 6 5.5768 0.8982 -1.3598 9 1 5.9796 1.8157 -0.9309 10 6 5.9523 0.8197 -2.8409 11 6 5.4847 2.0677 -3.5445 12 1 4.9707 2.8393 -2.9907 13 6 5.7131 2.2243 -4.8952 14 7 5.3045 3.3132 -5.5092 15 14 6.6014 0.8893 -5.8531 16 1 5.6109 -0.0805 -6.3856 17 1 7.3488 1.5027 -6.9802 18 1 7.5511 0.1841 -4.9551 19 6 6.1507 -0.2904 -0.6325 20 6 7.3175 -0.1571 0.0968 21 6 7.8436 -1.2473 0.7644 22 6 7.2027 -2.4705 0.7032 23 6 6.0360 -2.6038 -0.0261 24 6 5.5108 -1.5142 -0.6953 25 6 1.6478 2.1221 1.3135 26 1 0.5653 2.0805 1.4351 27 6 2.1022 3.5828 1.2875 28 8 2.2760 1.4472 2.4051 29 1 -0.3633 0.4313 0.9327 30 1 -0.3634 0.5921 -0.8400 31 1 -0.3632 -1.0235 -0.0929 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.5677 0.4987 -1.9184 35 1 7.0346 0.7323 -2.9372 36 1 5.4760 -0.0513 -3.2909 37 1 5.4655 3.4234 -6.4594 38 1 7.8179 0.7987 0.1450 39 1 8.7554 -1.1433 1.3338 40 1 7.6162 -3.3234 1.2210 41 1 5.5354 -3.5596 -0.0743 42 1 4.5995 -1.6184 -1.2654 43 1 1.5607 4.1180 0.5073 44 1 1.8976 4.0443 2.2536 45 1 3.1719 3.6270 1.0830 46 1 3.2421 1.4447 2.3625 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419949073.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:35:46 Heat of formation + Delta-G solvation = -86.166753 kcal Electronic energy + Delta-G solvation = -26188.915571 eV Core-core repulsion = 22656.485521 eV Total energy + Delta-G solvation = -3532.430050 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.30266 -38.96277 -36.96878 -35.24434 -34.23528 -32.67044 -31.20898 -30.58646 -30.53223 -29.37460 -27.29315 -24.97220 -22.70600 -22.43139 -21.81760 -21.75426 -20.00344 -19.68731 -17.28960 -17.02344 -16.53629 -16.18133 -15.48041 -15.14770 -14.97284 -14.74316 -14.45578 -14.33452 -14.06177 -13.49333 -13.29599 -13.13138 -13.02863 -12.67708 -12.46550 -12.42185 -12.13481 -11.99487 -11.85076 -11.56896 -11.33534 -11.32564 -11.12778 -11.03875 -10.79541 -10.57231 -10.45586 -10.28739 -9.93173 -9.74556 -9.42413 -9.21271 -8.68828 -8.65114 -8.55447 -8.34092 -6.16698 -4.16843 1.63949 1.67257 2.96618 3.20535 3.30252 3.33012 3.61181 4.10899 4.33127 4.54805 4.69001 4.90402 5.02974 5.14415 5.14727 5.17345 5.23189 5.29892 5.38899 5.40262 5.43594 5.47225 5.66126 5.77318 5.78786 5.80808 5.91839 5.98713 6.02890 6.12274 6.14922 6.19295 6.26955 6.30527 6.37128 6.52490 6.69990 6.73162 6.76431 6.87689 6.99631 7.25417 7.28068 7.59294 7.95304 7.99309 8.37701 8.65001 8.88254 9.44113 10.95964 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.009750 B = 0.005947 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.166875 B = 4707.177495 C = 6368.082491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.146 4.146 4 H 0.105 0.895 5 C 0.524 3.476 6 O -0.553 6.553 7 N -0.694 5.694 8 C 0.193 3.807 9 H 0.093 0.907 10 C -0.014 4.014 11 C -0.522 4.522 12 H 0.075 0.925 13 C 0.071 3.929 14 N -0.897 5.897 15 Si 0.875 3.125 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.265 1.265 19 C -0.076 4.076 20 C -0.107 4.107 21 C -0.122 4.122 22 C -0.132 4.132 23 C -0.124 4.124 24 C -0.109 4.109 25 C 0.128 3.872 26 H 0.098 0.902 27 C -0.198 4.198 28 O -0.571 6.571 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.402 0.598 35 H 0.034 0.966 36 H 0.018 0.982 37 H 0.264 0.736 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.085 0.915 46 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.872 -9.051 10.989 15.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.168 4.168 4 H 0.123 0.877 5 C 0.311 3.689 6 O -0.433 6.433 7 N -0.342 5.342 8 C 0.089 3.911 9 H 0.111 0.889 10 C -0.051 4.051 11 C -0.560 4.560 12 H 0.093 0.907 13 C -0.131 4.131 14 N -0.535 5.535 15 Si 0.702 3.298 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.189 1.189 19 C -0.078 4.078 20 C -0.126 4.126 21 C -0.140 4.140 22 C -0.151 4.151 23 C -0.142 4.142 24 C -0.127 4.127 25 C 0.068 3.932 26 H 0.115 0.885 27 C -0.255 4.255 28 O -0.383 6.383 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.237 0.763 35 H 0.052 0.948 36 H 0.037 0.963 37 H 0.074 0.926 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.104 0.896 46 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -4.971 -8.690 11.569 15.299 hybrid contribution 0.764 -0.660 -1.421 1.743 sum -4.207 -9.349 10.148 14.426 Atomic orbital electron populations 1.21803 0.95246 1.01818 1.01987 1.21422 0.96411 0.94197 1.02865 1.22208 0.93386 0.99416 1.01753 0.87745 1.20436 0.89720 0.76991 0.81757 1.90477 1.65060 1.46611 1.41197 1.45941 1.07943 1.58560 1.21763 1.19983 0.78884 0.94806 0.97441 0.88925 1.19877 0.97711 0.98254 0.89307 1.20999 1.38253 1.02926 0.93802 0.90652 1.24983 0.95062 0.95350 0.97674 1.69904 1.46582 1.26587 1.10427 0.86857 0.80581 0.82358 0.79999 1.20257 1.21263 1.18941 1.20544 0.95115 0.95744 0.96362 1.21035 0.95953 0.98852 0.96720 1.21064 0.99850 0.93133 0.99945 1.21023 0.96308 0.97367 1.00363 1.21053 0.96576 0.98379 0.98222 1.20916 0.99910 0.92411 0.99482 1.21558 0.96968 0.90559 0.84069 0.88475 1.22706 1.04742 0.96263 1.01805 1.86375 1.26810 1.78430 1.46662 0.92362 0.92508 0.92560 0.91613 0.90757 0.76346 0.94811 0.96344 0.92593 0.86055 0.86504 0.86753 0.86665 0.86584 0.92370 0.92353 0.89643 0.76071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.55 37.16 0.35 -1.08 16 2 C -0.11 -1.26 5.29 -26.73 -0.14 -1.40 16 3 C -0.15 -1.91 2.06 -91.77 -0.19 -2.09 16 4 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 5 C 0.52 8.51 6.59 -10.98 -0.07 8.44 16 6 O -0.55 -10.19 11.40 -14.01 -0.16 -10.35 16 7 N -0.69 -11.62 3.89 -54.93 -0.21 -11.83 16 8 C 0.19 3.64 2.12 -69.08 -0.15 3.49 16 9 H 0.09 1.94 7.44 -51.93 -0.39 1.56 16 10 C -0.01 -0.30 3.56 -27.88 -0.10 -0.40 16 11 C -0.52 -13.64 9.39 -34.44 -0.32 -13.96 16 12 H 0.08 2.17 7.99 -52.49 -0.42 1.75 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 14 N -0.90 -26.31 13.96 55.43 0.77 -25.54 16 15 Si 0.87 20.55 27.47 -169.99 -4.67 15.88 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 19 C -0.08 -1.30 4.91 -104.62 -0.51 -1.81 16 20 C -0.11 -1.71 9.67 -39.58 -0.38 -2.09 16 21 C -0.12 -1.69 10.05 -39.58 -0.40 -2.08 16 22 C -0.13 -1.73 10.05 -39.58 -0.40 -2.13 16 23 C -0.12 -1.68 10.05 -39.58 -0.40 -2.08 16 24 C -0.11 -1.66 9.32 -39.58 -0.37 -2.03 16 25 C 0.13 1.69 3.13 -26.73 -0.08 1.61 16 26 H 0.10 1.12 6.58 -51.93 -0.34 0.78 16 27 C -0.20 -2.72 9.30 37.16 0.35 -2.37 16 28 O -0.57 -8.63 12.63 -54.79 -0.69 -9.33 16 29 H 0.06 0.55 6.78 -51.93 -0.35 0.20 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.71 7.41 -51.93 -0.38 0.32 16 33 H 0.07 0.92 7.60 -51.93 -0.39 0.53 16 34 H 0.40 6.24 7.96 -40.82 -0.32 5.91 16 35 H 0.03 0.76 7.20 -51.92 -0.37 0.39 16 36 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 38 H 0.12 1.86 8.04 -52.49 -0.42 1.44 16 39 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 40 H 0.11 1.19 8.06 -52.48 -0.42 0.77 16 41 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 42 H 0.12 1.63 7.72 -52.49 -0.41 1.23 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 1.39 5.65 -51.93 -0.29 1.10 16 46 H 0.39 6.13 6.32 45.56 0.29 6.42 16 LS Contribution 368.06 15.07 5.55 5.55 Total: -1.00 -29.93 368.06 -9.08 -39.01 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -6.75 Total: 14.74 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -2.91 Total: -18.14 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.56 Total: -37.37 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.85 Total: -19.68 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.93 -9.08 -39.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419949073.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.158 kcal (2) G-P(sol) polarization free energy of solvation -29.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds