Wall clock time and date at job start Fri Apr 10 2020 21:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46826 * 2 1 4 4 H 1.09001 * 109.47060 * 305.58295 * 3 2 1 5 5 C 1.50701 * 109.47286 * 185.58531 * 3 2 1 6 6 O 1.21281 * 120.00043 * 240.00525 * 5 3 2 7 7 N 1.34779 * 119.99840 * 59.99446 * 5 3 2 8 8 C 1.46502 * 119.99861 * 179.97438 * 7 5 3 9 9 H 1.08996 * 109.47287 * 325.00632 * 8 7 5 10 10 C 1.53003 * 109.46797 * 205.00370 * 8 7 5 11 11 C 1.50700 * 109.47171 * 65.00648 * 10 8 7 12 12 H 1.07999 * 119.99752 * 359.97438 * 11 10 8 13 13 C 1.37878 * 119.99963 * 179.97438 * 11 10 8 14 14 N 1.31516 * 119.99732 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 120.00039 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47482 * 89.99497 * 15 13 11 17 17 H 1.48500 * 109.47280 * 210.00015 * 15 13 11 18 18 H 1.48505 * 109.47192 * 329.99409 * 15 13 11 19 19 C 1.50694 * 109.47022 * 85.00705 * 8 7 5 20 20 C 1.38238 * 119.99947 * 219.99985 * 19 8 7 21 21 C 1.38237 * 119.99807 * 179.97438 * 20 19 8 22 22 C 1.38232 * 120.00219 * 359.97438 * 21 20 19 23 23 C 1.38235 * 120.00080 * 0.02562 * 22 21 20 24 24 C 1.38234 * 119.99953 * 0.06716 * 23 22 21 25 25 C 1.53001 * 109.47169 * 65.58515 * 3 2 1 26 26 H 1.09001 * 109.47139 * 302.53702 * 25 3 2 27 27 C 1.52998 * 109.46934 * 182.53831 * 25 3 2 28 28 O 1.42897 * 109.47078 * 62.53742 * 25 3 2 29 29 H 1.08992 * 109.47221 * 294.81741 * 1 2 3 30 30 H 1.09004 * 109.47322 * 54.82128 * 1 2 3 31 31 H 1.09000 * 109.46502 * 174.81595 * 1 2 3 32 32 H 1.08996 * 109.47352 * 240.00382 * 2 1 3 33 33 H 1.08994 * 109.47379 * 119.99818 * 2 1 3 34 34 H 0.97001 * 120.00304 * 0.02562 * 7 5 3 35 35 H 1.09007 * 109.46770 * 184.99898 * 10 8 7 36 36 H 1.08995 * 109.47112 * 304.99835 * 10 8 7 37 37 H 0.97001 * 119.99457 * 179.97438 * 14 13 11 38 38 H 1.07992 * 119.99951 * 359.97438 * 20 19 8 39 39 H 1.08002 * 119.99940 * 179.97438 * 21 20 19 40 40 H 1.08007 * 120.00085 * 179.71840 * 22 21 20 41 41 H 1.08003 * 120.00411 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.00111 * 179.97438 * 24 23 22 43 43 H 1.09006 * 109.46901 * 64.68173 * 27 25 3 44 44 H 1.09002 * 109.46855 * 184.67225 * 27 25 3 45 45 H 1.08998 * 109.47268 * 304.67725 * 27 25 3 46 46 H 0.96707 * 113.99768 * 60.00147 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5972 1.9844 -0.8358 5 6 3.5406 1.4449 -0.1383 6 8 4.2286 1.9412 0.7284 7 7 4.1180 0.8954 -1.2251 8 6 5.5768 0.8982 -1.3598 9 1 5.9796 1.8157 -0.9309 10 6 5.9523 0.8197 -2.8409 11 6 5.4847 2.0677 -3.5445 12 1 4.9707 2.8393 -2.9907 13 6 5.7131 2.2243 -4.8952 14 7 5.3045 3.3132 -5.5092 15 14 6.6014 0.8893 -5.8531 16 1 5.6109 -0.0805 -6.3856 17 1 7.3488 1.5027 -6.9802 18 1 7.5511 0.1841 -4.9551 19 6 6.1507 -0.2904 -0.6325 20 6 7.3175 -0.1571 0.0968 21 6 7.8436 -1.2473 0.7644 22 6 7.2027 -2.4705 0.7032 23 6 6.0360 -2.6038 -0.0261 24 6 5.5108 -1.5142 -0.6953 25 6 1.6478 2.1221 1.3135 26 1 0.5653 2.0805 1.4351 27 6 2.1022 3.5828 1.2875 28 8 2.2760 1.4472 2.4051 29 1 -0.3633 0.4313 0.9327 30 1 -0.3634 0.5921 -0.8400 31 1 -0.3632 -1.0235 -0.0929 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.5677 0.4987 -1.9184 35 1 7.0346 0.7323 -2.9372 36 1 5.4760 -0.0513 -3.2909 37 1 5.4655 3.4234 -6.4594 38 1 7.8179 0.7987 0.1450 39 1 8.7554 -1.1433 1.3338 40 1 7.6162 -3.3234 1.2210 41 1 5.5354 -3.5596 -0.0743 42 1 4.5995 -1.6184 -1.2654 43 1 1.5607 4.1180 0.5073 44 1 1.8976 4.0443 2.2536 45 1 3.1719 3.6270 1.0830 46 1 3.2421 1.4447 2.3625 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419949073.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:35:45 Heat of formation + Delta-G solvation = -103.794448 kcal Electronic energy + Delta-G solvation = -26189.679965 eV Core-core repulsion = 22656.485521 eV Total energy + Delta-G solvation = -3533.194445 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.57705 -40.12136 -38.18028 -36.68912 -35.34716 -34.59797 -32.53205 -31.69450 -31.60006 -30.97763 -28.42015 -26.53841 -23.77805 -23.60880 -23.32142 -22.85910 -21.36985 -20.95905 -19.07191 -18.36702 -17.82248 -17.40491 -16.75436 -16.44525 -16.29351 -15.98225 -15.84948 -15.59960 -15.30348 -14.81258 -14.49713 -14.43143 -14.20699 -14.14807 -13.90672 -13.57919 -13.49080 -13.25405 -13.01917 -12.82189 -12.72662 -12.47278 -12.33958 -12.29824 -12.00141 -11.95227 -11.80273 -11.72557 -11.49190 -11.44495 -10.86032 -10.79164 -10.51635 -9.98011 -9.75398 -9.53704 -8.29137 -6.33665 0.49828 0.56093 1.34748 1.38736 1.48714 1.67401 2.31489 2.34730 2.96396 3.06906 3.45232 3.57955 3.86361 3.90284 4.02056 4.03867 4.20724 4.29565 4.32981 4.36669 4.40222 4.42845 4.54514 4.58299 4.67621 4.73083 4.76702 4.87303 4.94508 5.02176 5.08283 5.14364 5.17888 5.18340 5.24618 5.28300 5.38493 5.46246 5.54803 5.58406 5.65179 5.65474 5.86504 6.17880 6.24616 6.64477 6.73412 6.74007 7.30326 7.34851 8.86951 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.009750 B = 0.005947 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.166875 B = 4707.177495 C = 6368.082491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 C -0.138 4.138 4 H 0.113 0.887 5 C 0.518 3.482 6 O -0.578 6.578 7 N -0.694 5.694 8 C 0.205 3.795 9 H 0.057 0.943 10 C -0.005 4.005 11 C -0.519 4.519 12 H 0.033 0.967 13 C 0.013 3.987 14 N -0.946 5.946 15 Si 0.942 3.058 16 H -0.261 1.261 17 H -0.289 1.289 18 H -0.251 1.251 19 C -0.098 4.098 20 C -0.130 4.130 21 C -0.124 4.124 22 C -0.128 4.128 23 C -0.123 4.123 24 C -0.118 4.118 25 C 0.127 3.873 26 H 0.123 0.877 27 C -0.196 4.196 28 O -0.578 6.578 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.408 0.592 35 H 0.028 0.972 36 H 0.034 0.966 37 H 0.266 0.734 38 H 0.112 0.888 39 H 0.141 0.859 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.124 0.876 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.363 -12.325 11.437 17.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 C -0.160 4.160 4 H 0.131 0.869 5 C 0.306 3.694 6 O -0.460 6.460 7 N -0.342 5.342 8 C 0.100 3.900 9 H 0.075 0.925 10 C -0.043 4.043 11 C -0.557 4.557 12 H 0.052 0.948 13 C -0.184 4.184 14 N -0.586 5.586 15 Si 0.766 3.234 16 H -0.186 1.186 17 H -0.215 1.215 18 H -0.175 1.175 19 C -0.099 4.099 20 C -0.149 4.149 21 C -0.141 4.141 22 C -0.145 4.145 23 C -0.141 4.141 24 C -0.137 4.137 25 C 0.068 3.932 26 H 0.140 0.860 27 C -0.253 4.253 28 O -0.389 6.389 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.243 0.757 35 H 0.046 0.954 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.130 0.870 39 H 0.159 0.841 40 H 0.166 0.834 41 H 0.164 0.836 42 H 0.142 0.858 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.073 0.927 46 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -5.480 -11.979 12.031 17.840 hybrid contribution 0.919 0.427 -1.465 1.781 sum -4.561 -11.552 10.566 16.306 Atomic orbital electron populations 1.21788 0.93440 1.02864 1.02405 1.21404 0.97857 0.92447 1.02649 1.22228 0.90654 1.01068 1.02019 0.86898 1.21067 0.91160 0.76097 0.81056 1.90470 1.66071 1.47462 1.42040 1.45889 1.07178 1.58859 1.22261 1.19540 0.80179 0.94703 0.95579 0.92464 1.19731 0.97168 0.96356 0.91011 1.21189 1.37145 1.03532 0.93805 0.94816 1.25864 0.96026 0.97691 0.98866 1.70058 1.48673 1.29050 1.10863 0.85777 0.79720 0.79528 0.78353 1.18611 1.21506 1.17514 1.20358 0.96132 0.95565 0.97866 1.21164 0.96219 0.99614 0.97896 1.21369 1.00639 0.92779 0.99353 1.21467 0.95729 0.97911 0.99436 1.21433 0.96645 0.98934 0.97096 1.21079 1.00249 0.92242 1.00080 1.21742 0.98023 0.89818 0.83647 0.85959 1.22665 1.02817 0.97239 1.02579 1.86361 1.26358 1.78700 1.47487 0.92184 0.91782 0.91307 0.90985 0.91821 0.75661 0.95384 0.94787 0.92551 0.86976 0.84111 0.83380 0.83649 0.85776 0.91247 0.91643 0.92715 0.76740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.55 71.98 0.69 -1.74 16 2 C -0.11 -2.22 5.29 30.60 0.16 -2.06 16 3 C -0.14 -3.54 2.06 -11.54 -0.02 -3.56 16 4 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 5 C 0.52 17.31 6.59 87.66 0.58 17.89 16 6 O -0.58 -22.45 11.40 15.67 0.18 -22.28 16 7 N -0.69 -23.82 3.89 -446.10 -1.74 -25.56 16 8 C 0.21 8.01 2.12 44.24 0.09 8.11 16 9 H 0.06 2.60 7.44 -2.39 -0.02 2.58 16 10 C 0.00 -0.22 3.56 29.85 0.11 -0.11 16 11 C -0.52 -28.08 9.39 25.60 0.24 -27.83 16 12 H 0.03 2.06 7.99 -2.91 -0.02 2.03 16 13 C 0.01 0.72 5.47 84.65 0.46 1.19 16 14 N -0.95 -57.21 13.96 21.45 0.30 -56.91 16 15 Si 0.94 42.26 27.47 68.60 1.88 44.15 16 16 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 17 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 18 H -0.25 -10.64 6.54 99.48 0.65 -9.99 16 19 C -0.10 -3.32 4.91 -19.87 -0.10 -3.42 16 20 C -0.13 -4.18 9.67 22.27 0.22 -3.96 16 21 C -0.12 -3.17 10.05 22.27 0.22 -2.95 16 22 C -0.13 -2.88 10.05 22.27 0.22 -2.65 16 23 C -0.12 -2.93 10.05 22.27 0.22 -2.70 16 24 C -0.12 -3.41 9.32 22.27 0.21 -3.20 16 25 C 0.13 3.25 3.13 30.59 0.10 3.35 16 26 H 0.12 2.56 6.58 -2.39 -0.02 2.54 16 27 C -0.20 -5.41 9.30 71.98 0.67 -4.74 16 28 O -0.58 -17.29 12.63 -130.27 -1.65 -18.94 16 29 H 0.06 0.97 6.78 -2.39 -0.02 0.95 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.42 7.41 -2.39 -0.02 1.40 16 33 H 0.06 1.49 7.60 -2.39 -0.02 1.47 16 34 H 0.41 12.72 7.96 -92.71 -0.74 11.99 16 35 H 0.03 1.27 7.20 -2.38 -0.02 1.25 16 36 H 0.03 1.40 7.57 -2.39 -0.02 1.38 16 37 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.11 3.64 8.04 -2.91 -0.02 3.61 16 39 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 40 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 41 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 42 H 0.12 3.26 7.72 -2.91 -0.02 3.24 16 43 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 44 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.05 1.87 5.65 -2.39 -0.01 1.85 16 46 H 0.38 12.38 6.32 -74.05 -0.47 11.91 16 Total: -1.00 -67.19 368.06 2.77 -64.42 By element: Atomic # 1 Polarization: 43.78 SS G_CDS: -0.28 Total: 43.50 kcal Atomic # 6 Polarization: -32.46 SS G_CDS: 4.07 Total: -28.39 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -1.44 Total: -82.47 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -1.47 Total: -41.21 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.88 Total: 44.15 kcal Total: -67.19 2.77 -64.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419949073.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.372 kcal (2) G-P(sol) polarization free energy of solvation -67.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds