Wall clock time and date at job start Fri Apr 10 2020 21:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47281 * 2 1 4 4 H 1.09000 * 109.47392 * 304.43900 * 3 2 1 5 5 C 1.50693 * 109.47118 * 184.43560 * 3 2 1 6 6 O 1.21280 * 120.00490 * 345.74368 * 5 3 2 7 7 N 1.34776 * 119.99809 * 165.73966 * 5 3 2 8 8 C 1.46505 * 119.99886 * 185.31663 * 7 5 3 9 9 H 1.09000 * 109.47345 * 35.00347 * 8 7 5 10 10 C 1.53002 * 109.46986 * 155.00181 * 8 7 5 11 11 C 1.50699 * 109.47033 * 295.00121 * 10 8 7 12 12 H 1.08001 * 120.00049 * 0.02562 * 11 10 8 13 13 C 1.37877 * 119.99838 * 180.02562 * 11 10 8 14 14 N 1.31519 * 120.00216 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 120.00076 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46942 * 59.99533 * 15 13 11 17 17 H 1.48498 * 109.47200 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46912 * 299.99832 * 15 13 11 19 19 C 1.50699 * 109.47085 * 275.00050 * 8 7 5 20 20 C 1.38233 * 120.00192 * 319.72555 * 19 8 7 21 21 C 1.38229 * 119.99896 * 179.81160 * 20 19 8 22 22 C 1.38232 * 120.00260 * 0.39387 * 21 20 19 23 23 C 1.38234 * 119.99926 * 359.86452 * 22 21 20 24 24 C 1.38234 * 119.99853 * 140.00228 * 19 8 7 25 25 C 1.53004 * 109.46814 * 64.43572 * 3 2 1 26 26 H 1.09000 * 109.47204 * 302.27329 * 25 3 2 27 27 C 1.53003 * 109.46801 * 182.27222 * 25 3 2 28 28 O 1.42906 * 109.46888 * 62.27358 * 25 3 2 29 29 H 1.08995 * 109.47186 * 183.23211 * 1 2 3 30 30 H 1.08996 * 109.46729 * 303.23421 * 1 2 3 31 31 H 1.09002 * 109.47052 * 63.22570 * 1 2 3 32 32 H 1.08999 * 109.47053 * 240.00335 * 2 1 3 33 33 H 1.08993 * 109.46980 * 120.00293 * 2 1 3 34 34 H 0.97003 * 120.00308 * 5.31909 * 7 5 3 35 35 H 1.09006 * 109.47416 * 54.99962 * 10 8 7 36 36 H 1.08997 * 109.47172 * 175.00042 * 10 8 7 37 37 H 0.97004 * 119.99822 * 179.97438 * 14 13 11 38 38 H 1.08004 * 119.99666 * 359.97438 * 20 19 8 39 39 H 1.08004 * 120.00320 * 180.23330 * 21 20 19 40 40 H 1.08005 * 120.00311 * 179.83164 * 22 21 20 41 41 H 1.07999 * 120.00475 * 179.97438 * 23 22 21 42 42 H 1.08001 * 119.99940 * 359.97438 * 24 19 8 43 43 H 1.08996 * 109.47302 * 297.05341 * 27 25 3 44 44 H 1.08991 * 109.47051 * 57.05661 * 27 25 3 45 45 H 1.09003 * 109.46740 * 177.05538 * 27 25 3 46 46 H 0.96697 * 113.99794 * 59.99925 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6133 1.9788 -0.8475 5 6 3.5430 1.4439 -0.1099 6 8 4.1658 0.4202 0.0775 7 7 4.1952 2.5828 -0.4165 8 6 5.6432 2.5608 -0.6379 9 1 5.9231 1.6234 -1.1186 10 6 6.0395 3.7333 -1.5374 11 6 5.4247 3.5504 -2.9011 12 1 4.8123 2.6846 -3.1057 13 6 5.6442 4.4883 -3.8876 14 7 6.3895 5.5429 -3.6384 15 14 4.8816 4.2620 -5.5779 16 1 3.4028 4.2136 -5.4513 17 1 5.2663 5.4000 -6.4509 18 1 5.3691 2.9926 -6.1749 19 6 6.3555 2.6793 0.6848 20 6 5.8784 3.5443 1.6517 21 6 6.5296 3.6501 2.8664 22 6 7.6625 2.8970 3.1113 23 6 8.1427 2.0359 2.1424 24 6 7.4893 1.9272 0.9290 25 6 1.6232 2.1308 1.3013 26 1 0.5383 2.0941 1.4004 27 6 2.0841 3.5895 1.2770 28 8 2.2257 1.4592 2.4096 29 1 -0.3633 -1.0260 0.0579 30 1 -0.3632 0.5632 0.8596 31 1 -0.3633 0.4629 -0.9175 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.7059 3.4171 -0.4906 35 1 5.6809 4.6648 -1.0993 36 1 7.1249 3.7696 -1.6300 37 1 6.5442 6.2025 -4.3326 38 1 4.9954 4.1356 1.4590 39 1 6.1547 4.3232 3.6233 40 1 8.1729 2.9816 4.0594 41 1 9.0281 1.4477 2.3334 42 1 7.8644 1.2543 0.1721 43 1 3.1724 3.6260 1.2307 44 1 1.6663 4.0880 0.4024 45 1 1.7418 4.0938 2.1807 46 1 3.1924 1.4528 2.3872 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419949076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:35:51 Heat of formation + Delta-G solvation = -84.980081 kcal Electronic energy + Delta-G solvation = -26362.110438 eV Core-core repulsion = 22829.731845 eV Total energy + Delta-G solvation = -3532.378592 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.27866 -38.81147 -37.16466 -35.31768 -33.96726 -32.83984 -31.53841 -30.51625 -30.30095 -28.80729 -27.31950 -24.96726 -22.90791 -22.31538 -22.06265 -21.69830 -19.85183 -19.57327 -17.28021 -16.77455 -16.51700 -16.22675 -15.66024 -15.14654 -14.94296 -14.86040 -14.56165 -14.14504 -13.76191 -13.54206 -13.36573 -13.12058 -12.85171 -12.69196 -12.56320 -12.24995 -12.14652 -11.87564 -11.73014 -11.52787 -11.29154 -11.17053 -11.02359 -10.89789 -10.75338 -10.66835 -10.50979 -10.47748 -9.94037 -9.82062 -9.40833 -9.26815 -8.57920 -8.49997 -8.45266 -8.21226 -6.13550 -4.17524 1.74792 1.76945 3.00071 3.24558 3.30358 3.32789 3.66646 4.20184 4.33098 4.35485 4.71202 4.80049 5.01196 5.16049 5.22979 5.23290 5.24229 5.27101 5.29295 5.35460 5.49757 5.53416 5.61113 5.69721 5.82681 5.87222 5.90682 5.91431 6.06062 6.13579 6.17845 6.25952 6.33379 6.40776 6.45766 6.53617 6.81563 6.82876 6.85924 7.06900 7.37060 7.43899 7.55893 7.61342 7.82556 8.06727 8.20900 8.69979 8.87993 9.47729 10.96797 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.009010 B = 0.006509 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.060735 B = 4300.777148 C = 6457.858880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.100 4.100 3 C -0.145 4.145 4 H 0.101 0.899 5 C 0.510 3.490 6 O -0.543 6.543 7 N -0.701 5.701 8 C 0.182 3.818 9 H 0.085 0.915 10 C 0.024 3.976 11 C -0.523 4.523 12 H 0.057 0.943 13 C 0.061 3.939 14 N -0.891 5.891 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.069 4.069 20 C -0.113 4.113 21 C -0.123 4.123 22 C -0.134 4.134 23 C -0.121 4.121 24 C -0.108 4.108 25 C 0.114 3.886 26 H 0.108 0.892 27 C -0.208 4.208 28 O -0.558 6.558 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.401 0.599 35 H 0.024 0.976 36 H 0.034 0.966 37 H 0.263 0.737 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.833 -4.211 11.080 13.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.138 4.138 3 C -0.167 4.167 4 H 0.119 0.881 5 C 0.295 3.705 6 O -0.420 6.420 7 N -0.352 5.352 8 C 0.078 3.922 9 H 0.103 0.897 10 C -0.013 4.013 11 C -0.561 4.561 12 H 0.075 0.925 13 C -0.141 4.141 14 N -0.529 5.529 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.070 4.070 20 C -0.131 4.131 21 C -0.141 4.141 22 C -0.153 4.153 23 C -0.139 4.139 24 C -0.126 4.126 25 C 0.055 3.945 26 H 0.126 0.874 27 C -0.266 4.266 28 O -0.364 6.364 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.238 0.762 35 H 0.042 0.958 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.138 0.862 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -6.926 -4.851 11.255 14.078 hybrid contribution 0.054 0.637 -1.400 1.539 sum -6.872 -4.213 9.855 12.732 Atomic orbital electron populations 1.21843 0.95857 1.01741 1.01563 1.21229 0.94969 0.94034 1.03545 1.22198 0.93639 1.00099 1.00746 0.88099 1.20454 0.89376 0.83816 0.76829 1.90671 1.69047 1.32455 1.49845 1.46336 1.09182 1.10324 1.69385 1.20274 0.77997 1.03090 0.90857 0.89667 1.19385 0.97919 0.90930 0.93076 1.21084 1.31471 1.07558 0.95959 0.92486 1.24986 0.95138 0.95172 0.98768 1.69948 1.38000 1.11052 1.33950 0.86661 0.79625 0.77709 0.84043 1.20253 1.21261 1.20197 1.20526 0.95417 0.94783 0.96308 1.20925 1.00140 0.98583 0.93437 1.21036 0.96240 0.99721 0.97118 1.20997 0.97227 0.97931 0.99100 1.21048 0.99788 0.99093 0.93970 1.21012 0.95574 0.99101 0.96941 1.21846 0.98422 0.90043 0.84198 0.87433 1.22899 1.03437 0.96947 1.03308 1.86507 1.25124 1.78934 1.45826 0.92621 0.92517 0.92870 0.91603 0.90476 0.76198 0.95802 0.94763 0.92763 0.86635 0.86725 0.86828 0.86616 0.86240 0.90851 0.90872 0.91339 0.77541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.74 37.16 0.36 -1.20 16 2 C -0.10 -1.30 4.66 -26.73 -0.12 -1.42 16 3 C -0.15 -1.90 2.11 -91.77 -0.19 -2.09 16 4 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 5 C 0.51 8.48 5.59 -10.99 -0.06 8.42 16 6 O -0.54 -10.79 15.80 5.56 0.09 -10.70 16 7 N -0.70 -11.93 3.00 -54.93 -0.17 -12.10 16 8 C 0.18 3.57 2.07 -69.08 -0.14 3.43 16 9 H 0.09 1.85 7.52 -51.93 -0.39 1.46 16 10 C 0.02 0.57 4.49 -27.88 -0.13 0.44 16 11 C -0.52 -13.53 8.84 -34.44 -0.30 -13.83 16 12 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -25.15 13.29 55.43 0.74 -24.41 16 15 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 19 C -0.07 -1.23 4.91 -104.63 -0.51 -1.75 16 20 C -0.11 -1.80 9.28 -39.59 -0.37 -2.16 16 21 C -0.12 -1.75 10.05 -39.59 -0.40 -2.15 16 22 C -0.13 -1.85 10.05 -39.59 -0.40 -2.25 16 23 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16 24 C -0.11 -1.82 9.67 -39.58 -0.38 -2.21 16 25 C 0.11 1.32 3.16 -26.73 -0.08 1.24 16 26 H 0.11 1.09 6.37 -51.93 -0.33 0.76 16 27 C -0.21 -2.24 8.33 37.16 0.31 -1.93 16 28 O -0.56 -7.55 12.64 -35.23 -0.45 -8.00 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.54 6.35 -51.93 -0.33 0.21 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 1.11 7.56 -51.93 -0.39 0.72 16 34 H 0.40 6.39 6.53 -40.82 -0.27 6.12 16 35 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.12 1.72 5.93 -52.48 -0.31 1.41 16 39 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 40 H 0.11 1.26 8.06 -52.48 -0.42 0.84 16 41 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 42 H 0.12 1.96 8.04 -52.49 -0.42 1.54 16 43 H 0.07 0.88 3.86 -51.93 -0.20 0.68 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.38 5.21 8.01 45.56 0.37 5.57 16 LS Contribution 369.59 15.07 5.57 5.57 Total: -1.00 -29.89 369.59 -8.63 -38.52 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -6.47 Total: 13.53 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -2.92 Total: -18.09 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.57 Total: -36.51 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.36 Total: -18.69 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.89 -8.63 -38.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419949076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.462 kcal (2) G-P(sol) polarization free energy of solvation -29.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds