Wall clock time and date at job start Fri Apr 10 2020 21:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47281 * 2 1 4 4 H 1.09000 * 109.47392 * 304.43900 * 3 2 1 5 5 C 1.50693 * 109.47118 * 184.43560 * 3 2 1 6 6 O 1.21280 * 120.00490 * 345.74368 * 5 3 2 7 7 N 1.34776 * 119.99809 * 165.73966 * 5 3 2 8 8 C 1.46505 * 119.99886 * 185.31663 * 7 5 3 9 9 H 1.09000 * 109.47345 * 35.00347 * 8 7 5 10 10 C 1.53002 * 109.46986 * 155.00181 * 8 7 5 11 11 C 1.50699 * 109.47033 * 295.00121 * 10 8 7 12 12 H 1.08001 * 120.00049 * 0.02562 * 11 10 8 13 13 C 1.37877 * 119.99838 * 180.02562 * 11 10 8 14 14 N 1.31519 * 120.00216 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 120.00076 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46942 * 59.99533 * 15 13 11 17 17 H 1.48498 * 109.47200 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46912 * 299.99832 * 15 13 11 19 19 C 1.50699 * 109.47085 * 275.00050 * 8 7 5 20 20 C 1.38233 * 120.00192 * 319.72555 * 19 8 7 21 21 C 1.38229 * 119.99896 * 179.81160 * 20 19 8 22 22 C 1.38232 * 120.00260 * 0.39387 * 21 20 19 23 23 C 1.38234 * 119.99926 * 359.86452 * 22 21 20 24 24 C 1.38234 * 119.99853 * 140.00228 * 19 8 7 25 25 C 1.53004 * 109.46814 * 64.43572 * 3 2 1 26 26 H 1.09000 * 109.47204 * 302.27329 * 25 3 2 27 27 C 1.53003 * 109.46801 * 182.27222 * 25 3 2 28 28 O 1.42906 * 109.46888 * 62.27358 * 25 3 2 29 29 H 1.08995 * 109.47186 * 183.23211 * 1 2 3 30 30 H 1.08996 * 109.46729 * 303.23421 * 1 2 3 31 31 H 1.09002 * 109.47052 * 63.22570 * 1 2 3 32 32 H 1.08999 * 109.47053 * 240.00335 * 2 1 3 33 33 H 1.08993 * 109.46980 * 120.00293 * 2 1 3 34 34 H 0.97003 * 120.00308 * 5.31909 * 7 5 3 35 35 H 1.09006 * 109.47416 * 54.99962 * 10 8 7 36 36 H 1.08997 * 109.47172 * 175.00042 * 10 8 7 37 37 H 0.97004 * 119.99822 * 179.97438 * 14 13 11 38 38 H 1.08004 * 119.99666 * 359.97438 * 20 19 8 39 39 H 1.08004 * 120.00320 * 180.23330 * 21 20 19 40 40 H 1.08005 * 120.00311 * 179.83164 * 22 21 20 41 41 H 1.07999 * 120.00475 * 179.97438 * 23 22 21 42 42 H 1.08001 * 119.99940 * 359.97438 * 24 19 8 43 43 H 1.08996 * 109.47302 * 297.05341 * 27 25 3 44 44 H 1.08991 * 109.47051 * 57.05661 * 27 25 3 45 45 H 1.09003 * 109.46740 * 177.05538 * 27 25 3 46 46 H 0.96697 * 113.99794 * 59.99925 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6133 1.9788 -0.8475 5 6 3.5430 1.4439 -0.1099 6 8 4.1658 0.4202 0.0775 7 7 4.1952 2.5828 -0.4165 8 6 5.6432 2.5608 -0.6379 9 1 5.9231 1.6234 -1.1186 10 6 6.0395 3.7333 -1.5374 11 6 5.4247 3.5504 -2.9011 12 1 4.8123 2.6846 -3.1057 13 6 5.6442 4.4883 -3.8876 14 7 6.3895 5.5429 -3.6384 15 14 4.8816 4.2620 -5.5779 16 1 3.4028 4.2136 -5.4513 17 1 5.2663 5.4000 -6.4509 18 1 5.3691 2.9926 -6.1749 19 6 6.3555 2.6793 0.6848 20 6 5.8784 3.5443 1.6517 21 6 6.5296 3.6501 2.8664 22 6 7.6625 2.8970 3.1113 23 6 8.1427 2.0359 2.1424 24 6 7.4893 1.9272 0.9290 25 6 1.6232 2.1308 1.3013 26 1 0.5383 2.0941 1.4004 27 6 2.0841 3.5895 1.2770 28 8 2.2257 1.4592 2.4096 29 1 -0.3633 -1.0260 0.0579 30 1 -0.3632 0.5632 0.8596 31 1 -0.3633 0.4629 -0.9175 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.7059 3.4171 -0.4906 35 1 5.6809 4.6648 -1.0993 36 1 7.1249 3.7696 -1.6300 37 1 6.5442 6.2025 -4.3326 38 1 4.9954 4.1356 1.4590 39 1 6.1547 4.3232 3.6233 40 1 8.1729 2.9816 4.0594 41 1 9.0281 1.4477 2.3334 42 1 7.8644 1.2543 0.1721 43 1 3.1724 3.6260 1.2307 44 1 1.6663 4.0880 0.4024 45 1 1.7418 4.0938 2.1807 46 1 3.1924 1.4528 2.3872 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419949076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:35:50 Heat of formation + Delta-G solvation = -102.941125 kcal Electronic energy + Delta-G solvation = -26362.889287 eV Core-core repulsion = 22829.731845 eV Total energy + Delta-G solvation = -3533.157442 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.57788 -40.02329 -38.33639 -36.84332 -35.02442 -34.76739 -32.83885 -31.70442 -31.35986 -30.49003 -28.37514 -26.66437 -24.02195 -23.63735 -23.46855 -22.86461 -21.25674 -20.82208 -18.76652 -18.23542 -17.80553 -17.59959 -17.02176 -16.53282 -16.17278 -16.13479 -15.98561 -15.33823 -14.99288 -14.74989 -14.52560 -14.43578 -14.23192 -14.05771 -13.78950 -13.66372 -13.46841 -13.15314 -12.91452 -12.82892 -12.65907 -12.57584 -12.44895 -12.29141 -12.14556 -11.95161 -11.83656 -11.59637 -11.47456 -11.35027 -10.96508 -10.72964 -10.54724 -9.94823 -9.75050 -9.50923 -8.21137 -6.31724 0.51957 0.56337 1.39390 1.41269 1.48906 1.66605 2.32652 2.38915 2.97979 3.13010 3.34767 3.64853 3.77550 3.91478 4.01353 4.02498 4.18786 4.27327 4.28423 4.35557 4.38130 4.43191 4.59709 4.64473 4.68050 4.75953 4.78367 4.85811 4.93586 5.04747 5.12852 5.17623 5.19892 5.26552 5.29090 5.33291 5.41772 5.48065 5.60855 5.61925 5.65513 5.76660 5.90407 6.15252 6.20158 6.54872 6.69445 6.80753 7.33847 7.37672 8.89191 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.009010 B = 0.006509 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.060735 B = 4300.777148 C = 6457.858880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 C -0.138 4.138 4 H 0.117 0.883 5 C 0.509 3.491 6 O -0.579 6.579 7 N -0.695 5.695 8 C 0.198 3.802 9 H 0.054 0.946 10 C 0.038 3.962 11 C -0.531 4.531 12 H 0.054 0.946 13 C 0.012 3.988 14 N -0.925 5.925 15 Si 0.954 3.046 16 H -0.263 1.263 17 H -0.284 1.284 18 H -0.277 1.277 19 C -0.094 4.094 20 C -0.121 4.121 21 C -0.122 4.122 22 C -0.129 4.129 23 C -0.123 4.123 24 C -0.133 4.133 25 C 0.118 3.882 26 H 0.132 0.868 27 C -0.207 4.207 28 O -0.567 6.567 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.408 0.592 35 H 0.012 0.988 36 H 0.001 0.999 37 H 0.264 0.736 38 H 0.122 0.878 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.141 0.859 42 H 0.109 0.891 43 H 0.058 0.942 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.527 -3.700 12.315 15.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.136 4.136 3 C -0.160 4.160 4 H 0.135 0.865 5 C 0.297 3.703 6 O -0.460 6.460 7 N -0.346 5.346 8 C 0.093 3.907 9 H 0.073 0.927 10 C 0.001 3.999 11 C -0.569 4.569 12 H 0.072 0.928 13 C -0.187 4.187 14 N -0.564 5.564 15 Si 0.780 3.220 16 H -0.188 1.188 17 H -0.209 1.209 18 H -0.202 1.202 19 C -0.095 4.095 20 C -0.139 4.139 21 C -0.140 4.140 22 C -0.147 4.147 23 C -0.141 4.141 24 C -0.152 4.152 25 C 0.059 3.941 26 H 0.149 0.851 27 C -0.264 4.264 28 O -0.373 6.373 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.246 0.754 35 H 0.031 0.969 36 H 0.020 0.980 37 H 0.073 0.927 38 H 0.140 0.860 39 H 0.163 0.837 40 H 0.167 0.833 41 H 0.159 0.841 42 H 0.128 0.872 43 H 0.076 0.924 44 H 0.104 0.896 45 H 0.099 0.901 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -8.645 -4.335 12.495 15.801 hybrid contribution 0.644 0.457 -1.728 1.900 sum -8.001 -3.878 10.768 13.964 Atomic orbital electron populations 1.21802 0.93195 1.02659 1.02663 1.21196 0.97181 0.93461 1.01770 1.22263 0.90421 1.00779 1.02523 0.86483 1.21103 0.90884 0.82771 0.75559 1.90651 1.70200 1.33668 1.51433 1.46227 1.08090 1.10988 1.69315 1.19734 0.79905 0.99585 0.91486 0.92735 1.19127 0.95597 0.92029 0.93182 1.21363 1.31199 1.07210 0.97139 0.92801 1.25770 0.95572 0.94874 1.02451 1.70064 1.39330 1.11912 1.35143 0.85666 0.79427 0.77435 0.79514 1.18794 1.20934 1.20239 1.20400 0.96305 0.96850 0.95984 1.21072 1.00669 0.98296 0.93895 1.21421 0.95989 0.99766 0.96806 1.21452 0.96761 0.96437 1.00028 1.21365 1.00287 0.99382 0.93037 1.21151 0.96111 0.99711 0.98239 1.22008 0.99450 0.90071 0.82586 0.85064 1.22880 1.02463 0.96478 1.04574 1.86500 1.24854 1.79375 1.46573 0.91920 0.91346 0.91727 0.93422 0.92328 0.75441 0.96940 0.98025 0.92711 0.86021 0.83651 0.83271 0.84097 0.87247 0.92367 0.89632 0.90058 0.78003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.74 71.98 0.70 -1.95 16 2 C -0.10 -2.49 4.66 30.60 0.14 -2.35 16 3 C -0.14 -3.49 2.11 -11.54 -0.02 -3.52 16 4 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 5 C 0.51 17.28 5.59 87.65 0.49 17.77 16 6 O -0.58 -24.05 15.80 -3.03 -0.05 -24.10 16 7 N -0.70 -24.30 3.00 -446.09 -1.34 -25.64 16 8 C 0.20 8.22 2.07 44.24 0.09 8.31 16 9 H 0.05 2.56 7.52 -2.39 -0.02 2.54 16 10 C 0.04 1.88 4.49 29.85 0.13 2.01 16 11 C -0.53 -28.29 8.84 25.60 0.23 -28.06 16 12 H 0.05 2.85 7.74 -2.91 -0.02 2.82 16 13 C 0.01 0.67 5.46 84.65 0.46 1.13 16 14 N -0.92 -53.25 13.29 21.45 0.28 -52.96 16 15 Si 0.95 42.57 29.54 68.60 2.03 44.60 16 16 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 19 C -0.09 -3.49 4.91 -19.87 -0.10 -3.59 16 20 C -0.12 -3.84 9.28 22.27 0.21 -3.63 16 21 C -0.12 -3.21 10.05 22.27 0.22 -2.98 16 22 C -0.13 -3.22 10.05 22.27 0.22 -2.99 16 23 C -0.12 -3.48 10.05 22.27 0.22 -3.25 16 24 C -0.13 -4.70 9.67 22.27 0.22 -4.48 16 25 C 0.12 2.49 3.16 30.60 0.10 2.59 16 26 H 0.13 2.22 6.37 -2.39 -0.02 2.20 16 27 C -0.21 -4.01 8.33 71.98 0.60 -3.41 16 28 O -0.57 -14.70 12.64 -148.98 -1.88 -16.58 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 1.09 6.35 -2.39 -0.02 1.08 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.70 7.56 -2.39 -0.02 1.68 16 34 H 0.41 13.08 6.53 -92.71 -0.61 12.48 16 35 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 38 H 0.12 3.59 5.93 -2.91 -0.02 3.58 16 39 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 40 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 41 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 42 H 0.11 3.90 8.04 -2.91 -0.02 3.88 16 43 H 0.06 1.33 3.86 -2.39 -0.01 1.32 16 44 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.37 10.25 8.01 -74.06 -0.59 9.66 16 Total: -1.00 -66.55 369.59 2.74 -63.80 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: -0.21 Total: 39.29 kcal Atomic # 6 Polarization: -32.33 SS G_CDS: 3.92 Total: -28.41 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -1.06 Total: -78.60 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -1.93 Total: -40.68 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -66.55 2.74 -63.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419949076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.138 kcal (2) G-P(sol) polarization free energy of solvation -66.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds