Wall clock time and date at job start Fri Apr 10 2020 21:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47156 * 2 1 4 4 H 1.08997 * 109.47243 * 303.72869 * 3 2 1 5 5 C 1.50700 * 109.47039 * 183.72742 * 3 2 1 6 6 O 1.21289 * 119.99672 * 350.09597 * 5 3 2 7 7 N 1.34772 * 120.00166 * 170.09295 * 5 3 2 8 8 C 1.46503 * 120.00189 * 175.49416 * 7 5 3 9 9 H 1.08996 * 109.46910 * 35.00037 * 8 7 5 10 10 C 1.52993 * 109.47169 * 155.00122 * 8 7 5 11 11 C 1.50697 * 109.47422 * 294.99987 * 10 8 7 12 12 H 1.08008 * 119.99775 * 0.02562 * 11 10 8 13 13 C 1.37875 * 120.00658 * 180.02562 * 11 10 8 14 14 N 1.31516 * 120.00530 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99582 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.46992 * 90.00247 * 15 13 11 17 17 H 1.48504 * 109.47250 * 210.00028 * 15 13 11 18 18 H 1.48500 * 109.47264 * 329.99768 * 15 13 11 19 19 C 1.50701 * 109.46727 * 274.99897 * 8 7 5 20 20 C 1.38233 * 120.00265 * 319.72752 * 19 8 7 21 21 C 1.38234 * 119.99711 * 179.81242 * 20 19 8 22 22 C 1.38240 * 120.00205 * 0.39178 * 21 20 19 23 23 C 1.38234 * 119.99837 * 359.86425 * 22 21 20 24 24 C 1.38240 * 119.99245 * 140.00083 * 19 8 7 25 25 C 1.52995 * 109.47072 * 63.72881 * 3 2 1 26 26 H 1.09003 * 109.47192 * 305.15016 * 25 3 2 27 27 C 1.53001 * 109.47204 * 65.15228 * 25 3 2 28 28 O 1.42906 * 109.47242 * 185.15305 * 25 3 2 29 29 H 1.08993 * 109.47391 * 183.94441 * 1 2 3 30 30 H 1.08999 * 109.46986 * 303.94782 * 1 2 3 31 31 H 1.09001 * 109.47213 * 63.94449 * 1 2 3 32 32 H 1.09002 * 109.46870 * 239.99691 * 2 1 3 33 33 H 1.08998 * 109.46800 * 120.00154 * 2 1 3 34 34 H 0.97002 * 119.99648 * 355.49246 * 7 5 3 35 35 H 1.09004 * 109.47492 * 54.99756 * 10 8 7 36 36 H 1.08997 * 109.47208 * 174.99700 * 10 8 7 37 37 H 0.96999 * 119.99843 * 179.97438 * 14 13 11 38 38 H 1.07993 * 119.99836 * 359.97438 * 20 19 8 39 39 H 1.08004 * 120.00053 * 180.23259 * 21 20 19 40 40 H 1.08005 * 119.99858 * 179.83546 * 22 21 20 41 41 H 1.08006 * 119.99862 * 179.97438 * 23 22 21 42 42 H 1.07995 * 120.00579 * 359.97438 * 24 19 8 43 43 H 1.09004 * 109.46895 * 64.07170 * 27 25 3 44 44 H 1.09004 * 109.46960 * 184.06768 * 27 25 3 45 45 H 1.08994 * 109.47001 * 304.06820 * 27 25 3 46 46 H 0.96699 * 113.99770 * 65.23509 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6232 1.9753 -0.8547 5 6 3.5442 1.4435 -0.0924 6 8 4.1598 0.4054 0.0283 7 7 4.2053 2.5977 -0.3091 8 6 5.6702 2.6156 -0.3007 9 1 6.0473 1.6821 -0.7182 10 6 6.1707 3.7903 -1.1435 11 6 5.7830 3.5764 -2.5839 12 1 5.2340 2.6912 -2.8696 13 6 6.1290 4.5105 -3.5371 14 7 5.7902 4.3241 -4.7941 15 14 7.0779 6.0418 -3.0428 16 1 8.5353 5.7725 -3.1357 17 1 6.7222 7.1599 -3.9531 18 1 6.7305 6.4104 -1.6469 19 6 6.1624 2.7677 1.1155 20 6 5.5161 3.6279 1.9834 21 6 5.9653 3.7644 3.2835 22 6 7.0659 3.0468 3.7135 23 6 7.7154 2.1906 2.8441 24 6 7.2639 2.0511 1.5450 25 6 1.6081 2.1361 1.2935 26 1 0.5268 2.0552 1.4056 27 6 2.2959 1.4671 2.4852 28 8 1.9796 3.5151 1.2416 29 1 -0.3634 -1.0251 0.0707 30 1 -0.3633 0.5739 0.8525 31 1 -0.3634 0.4514 -0.9232 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.7111 3.4166 -0.4708 35 1 5.7227 4.7152 -0.7802 36 1 7.2559 3.8572 -1.0654 37 1 6.0334 4.9815 -5.4646 38 1 4.6586 4.1912 1.6464 39 1 5.4580 4.4336 3.9627 40 1 7.4184 3.1555 4.7286 41 1 8.5755 1.6303 3.1799 42 1 7.7713 1.3821 0.8658 43 1 3.3738 1.6109 2.4102 44 1 1.9334 1.9133 3.4113 45 1 2.0705 0.4007 2.4831 46 1 1.5186 4.0211 0.5586 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419949078.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:35:55 Heat of formation + Delta-G solvation = -83.521969 kcal Electronic energy + Delta-G solvation = -26437.015343 eV Core-core repulsion = 22904.699979 eV Total energy + Delta-G solvation = -3532.315364 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.08443 -38.78762 -37.18157 -35.36648 -34.24144 -32.61806 -31.18636 -30.46591 -30.31537 -29.25907 -27.42856 -24.90485 -23.13263 -22.27613 -21.71081 -21.47410 -19.72949 -19.26509 -17.66815 -17.07438 -16.40965 -16.28595 -15.79792 -15.40919 -14.83497 -14.51210 -14.29647 -14.03463 -13.74737 -13.47822 -13.33901 -13.02266 -12.81514 -12.66107 -12.45684 -12.37300 -12.30964 -11.94042 -11.87775 -11.56206 -11.40047 -11.30527 -11.00126 -10.91262 -10.74991 -10.66905 -10.58910 -10.11281 -9.90019 -9.82598 -9.32625 -9.14337 -8.61460 -8.53090 -8.33821 -8.21556 -6.10498 -4.09818 1.74991 1.79454 3.20209 3.26631 3.34717 3.37755 3.77308 4.16215 4.22418 4.39023 4.76878 4.83670 4.95948 5.10332 5.21372 5.23978 5.26038 5.28534 5.32937 5.35952 5.53357 5.55377 5.68317 5.72985 5.84045 5.87927 5.91040 5.92580 6.02417 6.14220 6.17540 6.20863 6.32224 6.39042 6.43437 6.50945 6.81690 6.84668 6.90706 7.01322 7.12206 7.38928 7.42780 7.59710 7.67104 8.23609 8.45561 8.87691 8.95453 9.50757 11.02280 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.010223 B = 0.006234 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.294056 B = 4490.758311 C = 6201.917943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.104 4.104 3 C -0.144 4.144 4 H 0.095 0.905 5 C 0.525 3.475 6 O -0.554 6.554 7 N -0.689 5.689 8 C 0.194 3.806 9 H 0.090 0.910 10 C -0.014 4.014 11 C -0.518 4.518 12 H 0.075 0.925 13 C 0.070 3.930 14 N -0.899 5.899 15 Si 0.875 3.125 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.265 1.265 19 C -0.079 4.079 20 C -0.100 4.100 21 C -0.126 4.126 22 C -0.134 4.134 23 C -0.126 4.126 24 C -0.109 4.109 25 C 0.115 3.885 26 H 0.065 0.935 27 C -0.150 4.150 28 O -0.560 6.560 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.402 0.598 35 H 0.023 0.977 36 H 0.027 0.973 37 H 0.263 0.737 38 H 0.124 0.876 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.072 0.928 46 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.353 -2.889 14.865 17.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.142 4.142 3 C -0.165 4.165 4 H 0.113 0.887 5 C 0.310 3.690 6 O -0.433 6.433 7 N -0.338 5.338 8 C 0.089 3.911 9 H 0.108 0.892 10 C -0.051 4.051 11 C -0.556 4.556 12 H 0.093 0.907 13 C -0.131 4.131 14 N -0.538 5.538 15 Si 0.702 3.298 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.189 1.189 19 C -0.080 4.080 20 C -0.118 4.118 21 C -0.144 4.144 22 C -0.152 4.152 23 C -0.144 4.144 24 C -0.128 4.128 25 C 0.056 3.944 26 H 0.083 0.917 27 C -0.207 4.207 28 O -0.366 6.366 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.237 0.763 35 H 0.042 0.958 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.142 0.858 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.138 0.862 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.091 0.909 46 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -7.504 -3.714 15.259 17.405 hybrid contribution -0.014 1.448 -0.557 1.552 sum -7.518 -2.266 14.702 16.667 Atomic orbital electron populations 1.21885 0.95797 1.01831 1.01753 1.21333 0.94893 0.94137 1.03854 1.22150 0.94400 0.99632 1.00366 0.88725 1.20148 0.89044 0.83839 0.75964 1.90646 1.69549 1.31866 1.51196 1.45815 1.06968 1.10562 1.70434 1.19910 0.79457 1.02128 0.89622 0.89240 1.19857 0.96785 0.92693 0.95785 1.21021 1.36775 1.08168 0.89654 0.90690 1.24983 0.95409 0.97944 0.94794 1.69909 1.46852 1.35978 1.01028 0.86857 0.80794 0.83232 0.78885 1.20239 1.21389 1.18932 1.20591 0.95197 0.95329 0.96864 1.21026 0.99658 0.97958 0.93158 1.21056 0.97167 1.00041 0.96163 1.21007 0.96863 0.98132 0.99216 1.21028 1.00028 0.99328 0.93990 1.21043 0.96706 0.99244 0.95794 1.21732 0.97891 0.81303 0.93477 0.91719 1.21856 1.02321 1.00039 0.96521 1.86581 1.69496 1.20555 1.59938 0.92478 0.92624 0.92620 0.91007 0.90823 0.76323 0.95849 0.95436 0.92683 0.85775 0.86813 0.86938 0.86683 0.86220 0.91242 0.92228 0.90889 0.77556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.74 37.16 0.36 -1.05 16 2 C -0.10 -1.27 4.56 -26.73 -0.12 -1.39 16 3 C -0.14 -1.86 2.23 -91.77 -0.20 -2.06 16 4 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 5 C 0.52 9.22 5.54 -10.99 -0.06 9.16 16 6 O -0.55 -11.62 15.67 5.55 0.09 -11.53 16 7 N -0.69 -12.43 3.67 -54.93 -0.20 -12.63 16 8 C 0.19 3.91 2.15 -69.08 -0.15 3.77 16 9 H 0.09 2.03 7.38 -51.93 -0.38 1.64 16 10 C -0.01 -0.31 3.56 -27.89 -0.10 -0.41 16 11 C -0.52 -13.98 9.39 -34.44 -0.32 -14.31 16 12 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 13 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 14 N -0.90 -26.85 13.96 55.43 0.77 -26.07 16 15 Si 0.88 21.02 27.47 -169.99 -4.67 16.35 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 19 C -0.08 -1.43 4.91 -104.62 -0.51 -1.95 16 20 C -0.10 -1.66 9.32 -39.58 -0.37 -2.03 16 21 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 22 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 23 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 24 C -0.11 -1.87 9.67 -39.58 -0.38 -2.26 16 25 C 0.12 1.27 3.20 -26.73 -0.09 1.18 16 26 H 0.07 0.58 6.21 -51.93 -0.32 0.25 16 27 C -0.15 -1.85 9.00 37.16 0.33 -1.51 16 28 O -0.56 -6.22 11.82 -35.23 -0.42 -6.63 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.44 6.24 -51.93 -0.32 0.12 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 33 H 0.07 0.94 6.28 -51.93 -0.33 0.61 16 34 H 0.40 6.73 7.63 -40.82 -0.31 6.42 16 35 H 0.02 0.52 7.20 -51.93 -0.37 0.15 16 36 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.12 2.02 7.73 -52.49 -0.41 1.61 16 39 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 40 H 0.11 1.27 8.06 -52.48 -0.42 0.84 16 41 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 42 H 0.12 1.98 8.04 -52.49 -0.42 1.56 16 43 H 0.07 1.07 7.24 -51.93 -0.38 0.70 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.84 6.31 -51.93 -0.33 0.51 16 46 H 0.38 2.82 9.12 45.56 0.42 3.23 16 LS Contribution 370.33 15.07 5.58 5.58 Total: -1.00 -32.53 370.33 -8.27 -40.80 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -6.52 Total: 11.90 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -2.90 Total: -17.77 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.57 Total: -38.70 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.33 Total: -18.17 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.53 -8.27 -40.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419949078.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.725 kcal (2) G-P(sol) polarization free energy of solvation -32.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds