Wall clock time and date at job start Fri Apr 10 2020 21:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47156 * 2 1 4 4 H 1.08997 * 109.47243 * 303.72869 * 3 2 1 5 5 C 1.50700 * 109.47039 * 183.72742 * 3 2 1 6 6 O 1.21289 * 119.99672 * 350.09597 * 5 3 2 7 7 N 1.34772 * 120.00166 * 170.09295 * 5 3 2 8 8 C 1.46503 * 120.00189 * 175.49416 * 7 5 3 9 9 H 1.08996 * 109.46910 * 35.00037 * 8 7 5 10 10 C 1.52993 * 109.47169 * 155.00122 * 8 7 5 11 11 C 1.50697 * 109.47422 * 294.99987 * 10 8 7 12 12 H 1.08008 * 119.99775 * 0.02562 * 11 10 8 13 13 C 1.37875 * 120.00658 * 180.02562 * 11 10 8 14 14 N 1.31516 * 120.00530 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99582 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.46992 * 90.00247 * 15 13 11 17 17 H 1.48504 * 109.47250 * 210.00028 * 15 13 11 18 18 H 1.48500 * 109.47264 * 329.99768 * 15 13 11 19 19 C 1.50701 * 109.46727 * 274.99897 * 8 7 5 20 20 C 1.38233 * 120.00265 * 319.72752 * 19 8 7 21 21 C 1.38234 * 119.99711 * 179.81242 * 20 19 8 22 22 C 1.38240 * 120.00205 * 0.39178 * 21 20 19 23 23 C 1.38234 * 119.99837 * 359.86425 * 22 21 20 24 24 C 1.38240 * 119.99245 * 140.00083 * 19 8 7 25 25 C 1.52995 * 109.47072 * 63.72881 * 3 2 1 26 26 H 1.09003 * 109.47192 * 305.15016 * 25 3 2 27 27 C 1.53001 * 109.47204 * 65.15228 * 25 3 2 28 28 O 1.42906 * 109.47242 * 185.15305 * 25 3 2 29 29 H 1.08993 * 109.47391 * 183.94441 * 1 2 3 30 30 H 1.08999 * 109.46986 * 303.94782 * 1 2 3 31 31 H 1.09001 * 109.47213 * 63.94449 * 1 2 3 32 32 H 1.09002 * 109.46870 * 239.99691 * 2 1 3 33 33 H 1.08998 * 109.46800 * 120.00154 * 2 1 3 34 34 H 0.97002 * 119.99648 * 355.49246 * 7 5 3 35 35 H 1.09004 * 109.47492 * 54.99756 * 10 8 7 36 36 H 1.08997 * 109.47208 * 174.99700 * 10 8 7 37 37 H 0.96999 * 119.99843 * 179.97438 * 14 13 11 38 38 H 1.07993 * 119.99836 * 359.97438 * 20 19 8 39 39 H 1.08004 * 120.00053 * 180.23259 * 21 20 19 40 40 H 1.08005 * 119.99858 * 179.83546 * 22 21 20 41 41 H 1.08006 * 119.99862 * 179.97438 * 23 22 21 42 42 H 1.07995 * 120.00579 * 359.97438 * 24 19 8 43 43 H 1.09004 * 109.46895 * 64.07170 * 27 25 3 44 44 H 1.09004 * 109.46960 * 184.06768 * 27 25 3 45 45 H 1.08994 * 109.47001 * 304.06820 * 27 25 3 46 46 H 0.96699 * 113.99770 * 65.23509 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6232 1.9753 -0.8547 5 6 3.5442 1.4435 -0.0924 6 8 4.1598 0.4054 0.0283 7 7 4.2053 2.5977 -0.3091 8 6 5.6702 2.6156 -0.3007 9 1 6.0473 1.6821 -0.7182 10 6 6.1707 3.7903 -1.1435 11 6 5.7830 3.5764 -2.5839 12 1 5.2340 2.6912 -2.8696 13 6 6.1290 4.5105 -3.5371 14 7 5.7902 4.3241 -4.7941 15 14 7.0779 6.0418 -3.0428 16 1 8.5353 5.7725 -3.1357 17 1 6.7222 7.1599 -3.9531 18 1 6.7305 6.4104 -1.6469 19 6 6.1624 2.7677 1.1155 20 6 5.5161 3.6279 1.9834 21 6 5.9653 3.7644 3.2835 22 6 7.0659 3.0468 3.7135 23 6 7.7154 2.1906 2.8441 24 6 7.2639 2.0511 1.5450 25 6 1.6081 2.1361 1.2935 26 1 0.5268 2.0552 1.4056 27 6 2.2959 1.4671 2.4852 28 8 1.9796 3.5151 1.2416 29 1 -0.3634 -1.0251 0.0707 30 1 -0.3633 0.5739 0.8525 31 1 -0.3634 0.4514 -0.9232 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.7111 3.4166 -0.4708 35 1 5.7227 4.7152 -0.7802 36 1 7.2559 3.8572 -1.0654 37 1 6.0334 4.9815 -5.4646 38 1 4.6586 4.1912 1.6464 39 1 5.4580 4.4336 3.9627 40 1 7.4184 3.1555 4.7286 41 1 8.5755 1.6303 3.1799 42 1 7.7713 1.3821 0.8658 43 1 3.3738 1.6109 2.4102 44 1 1.9334 1.9133 3.4113 45 1 2.0705 0.4007 2.4831 46 1 1.5186 4.0211 0.5586 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419949078.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:35:55 Heat of formation + Delta-G solvation = -105.430180 kcal Electronic energy + Delta-G solvation = -26437.965355 eV Core-core repulsion = 22904.699979 eV Total energy + Delta-G solvation = -3533.265375 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.40896 -40.00103 -38.29787 -36.86368 -35.29109 -34.65693 -32.62769 -31.68072 -31.23982 -30.94428 -28.53675 -26.55987 -24.03988 -23.57831 -23.31965 -22.72482 -21.20135 -20.43478 -19.07120 -18.68193 -17.69928 -17.60730 -16.92861 -16.84457 -16.29457 -16.03100 -15.49335 -15.28769 -14.91994 -14.82311 -14.53360 -14.48616 -14.21587 -14.11810 -13.82303 -13.58506 -13.50435 -13.26396 -13.03823 -12.86450 -12.65907 -12.49082 -12.39394 -12.28065 -11.92370 -11.86228 -11.73738 -11.68751 -11.67750 -11.42275 -10.94343 -10.79001 -10.45610 -9.87750 -9.73237 -9.51559 -8.29065 -6.33674 0.50958 0.58064 1.36305 1.37575 1.48911 1.82126 2.34831 2.42003 2.98061 3.06672 3.31381 3.76884 3.79421 3.92667 3.99931 4.05275 4.21467 4.21908 4.28962 4.35402 4.40399 4.46311 4.59174 4.60801 4.73804 4.75267 4.78512 4.82396 4.95148 5.02913 5.03804 5.15535 5.19133 5.20553 5.24738 5.27649 5.30688 5.51239 5.55187 5.63980 5.65388 5.68335 5.92202 6.19513 6.25355 6.71745 6.81288 6.93566 7.30275 7.46477 8.87189 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.010223 B = 0.006234 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.294056 B = 4490.758311 C = 6201.917943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 C -0.137 4.137 4 H 0.108 0.892 5 C 0.516 3.484 6 O -0.596 6.596 7 N -0.687 5.687 8 C 0.203 3.797 9 H 0.049 0.951 10 C -0.003 4.003 11 C -0.518 4.518 12 H 0.030 0.970 13 C 0.013 3.987 14 N -0.947 5.947 15 Si 0.945 3.055 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.244 1.244 19 C -0.101 4.101 20 C -0.107 4.107 21 C -0.125 4.125 22 C -0.126 4.126 23 C -0.125 4.125 24 C -0.134 4.134 25 C 0.125 3.875 26 H 0.101 0.899 27 C -0.149 4.149 28 O -0.573 6.573 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.408 0.592 35 H 0.036 0.964 36 H 0.025 0.975 37 H 0.266 0.734 38 H 0.125 0.875 39 H 0.143 0.857 40 H 0.150 0.850 41 H 0.142 0.858 42 H 0.109 0.891 43 H 0.032 0.968 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.277 -0.956 17.991 20.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.141 4.141 3 C -0.159 4.159 4 H 0.126 0.874 5 C 0.304 3.696 6 O -0.478 6.478 7 N -0.335 5.335 8 C 0.097 3.903 9 H 0.068 0.932 10 C -0.041 4.041 11 C -0.556 4.556 12 H 0.048 0.952 13 C -0.184 4.184 14 N -0.587 5.587 15 Si 0.768 3.232 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.167 1.167 19 C -0.102 4.102 20 C -0.125 4.125 21 C -0.142 4.142 22 C -0.144 4.144 23 C -0.143 4.143 24 C -0.152 4.152 25 C 0.066 3.934 26 H 0.119 0.881 27 C -0.206 4.206 28 O -0.381 6.381 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.244 0.756 35 H 0.054 0.946 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.143 0.857 39 H 0.161 0.839 40 H 0.167 0.833 41 H 0.159 0.841 42 H 0.127 0.873 43 H 0.052 0.948 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -8.452 -1.766 18.391 20.317 hybrid contribution 0.287 0.740 -1.529 1.723 sum -8.165 -1.026 16.862 18.763 Atomic orbital electron populations 1.21837 0.92721 1.02937 1.02916 1.21314 0.97415 0.93187 1.02165 1.22245 0.90387 1.00803 1.02449 0.87408 1.21058 0.91143 0.82794 0.74571 1.90614 1.70970 1.33219 1.53009 1.45783 1.06150 1.11201 1.70408 1.19499 0.80837 0.98957 0.90989 0.93246 1.19702 0.96587 0.94258 0.93509 1.21167 1.35864 1.06457 0.92126 0.95164 1.25872 0.96472 1.01547 0.94533 1.70059 1.48659 1.37545 1.02430 0.85749 0.79040 0.78812 0.79578 1.19931 1.20828 1.16708 1.20389 0.96510 0.97450 0.95828 1.21078 0.99661 0.97778 0.93989 1.21410 0.97242 1.00084 0.95508 1.21455 0.95880 0.96499 1.00581 1.21345 1.00694 0.99435 0.92839 1.21172 0.97015 0.99773 0.97270 1.21719 0.99440 0.80983 0.91288 0.88115 1.21846 1.00084 1.00728 0.97955 1.86548 1.70276 1.20500 1.60727 0.91632 0.90614 0.92062 0.93704 0.91689 0.75602 0.94625 0.95722 0.92499 0.85749 0.83914 0.83266 0.84055 0.87250 0.94836 0.90644 0.90560 0.75650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.74 71.98 0.70 -1.64 16 2 C -0.10 -2.49 4.56 30.59 0.14 -2.35 16 3 C -0.14 -3.50 2.23 -11.54 -0.03 -3.53 16 4 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 5 C 0.52 19.04 5.54 87.66 0.49 19.53 16 6 O -0.60 -26.86 15.67 -3.06 -0.05 -26.91 16 7 N -0.69 -25.86 3.67 -446.10 -1.64 -27.50 16 8 C 0.20 8.65 2.15 44.24 0.10 8.75 16 9 H 0.05 2.46 7.38 -2.39 -0.02 2.44 16 10 C 0.00 -0.13 3.56 29.84 0.11 -0.03 16 11 C -0.52 -29.19 9.39 25.60 0.24 -28.95 16 12 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 13 C 0.01 0.75 5.47 84.65 0.46 1.21 16 14 N -0.95 -58.33 13.96 21.45 0.30 -58.03 16 15 Si 0.94 43.39 27.47 68.60 1.88 45.27 16 16 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16 19 C -0.10 -3.74 4.91 -19.87 -0.10 -3.84 16 20 C -0.11 -3.43 9.32 22.27 0.21 -3.23 16 21 C -0.12 -3.29 10.05 22.27 0.22 -3.06 16 22 C -0.13 -3.09 10.05 22.27 0.22 -2.87 16 23 C -0.13 -3.48 10.05 22.27 0.22 -3.25 16 24 C -0.13 -4.66 9.67 22.27 0.22 -4.45 16 25 C 0.12 2.48 3.20 30.59 0.10 2.58 16 26 H 0.10 1.37 6.21 -2.39 -0.01 1.35 16 27 C -0.15 -3.47 9.00 71.98 0.65 -2.82 16 28 O -0.57 -11.45 11.82 -148.98 -1.76 -13.21 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 0.92 6.24 -2.39 -0.01 0.90 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.04 1.30 8.12 -2.39 -0.02 1.28 16 33 H 0.06 1.67 6.28 -2.39 -0.01 1.66 16 34 H 0.41 13.97 7.63 -92.71 -0.71 13.26 16 35 H 0.04 1.57 7.20 -2.39 -0.02 1.56 16 36 H 0.02 1.16 7.57 -2.39 -0.02 1.14 16 37 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 38 H 0.12 3.90 7.73 -2.91 -0.02 3.88 16 39 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 40 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 41 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 42 H 0.11 3.88 8.04 -2.91 -0.02 3.85 16 43 H 0.03 1.02 7.24 -2.38 -0.02 1.00 16 44 H 0.07 1.48 8.14 -2.38 -0.02 1.47 16 45 H 0.08 1.68 6.31 -2.39 -0.02 1.67 16 46 H 0.39 4.87 9.12 -74.06 -0.68 4.19 16 Total: -1.00 -74.98 370.33 2.23 -72.75 By element: Atomic # 1 Polarization: 36.04 SS G_CDS: -0.45 Total: 35.59 kcal Atomic # 6 Polarization: -31.90 SS G_CDS: 3.95 Total: -27.95 kcal Atomic # 7 Polarization: -84.20 SS G_CDS: -1.34 Total: -85.53 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -1.81 Total: -40.12 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.88 Total: 45.27 kcal Total: -74.98 2.23 -72.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419949078.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.683 kcal (2) G-P(sol) polarization free energy of solvation -74.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds