Wall clock time and date at job start Fri Apr 10 2020 21:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46711 * 2 1 4 4 H 1.08998 * 109.47133 * 54.15217 * 3 2 1 5 5 C 1.50703 * 109.47158 * 294.14356 * 3 2 1 6 6 O 1.21283 * 120.00108 * 247.96459 * 5 3 2 7 7 N 1.34777 * 119.99671 * 67.97141 * 5 3 2 8 8 C 1.46497 * 119.99680 * 183.24621 * 7 5 3 9 9 H 1.09000 * 109.47398 * 321.08474 * 8 7 5 10 10 C 1.53001 * 109.46919 * 201.08436 * 8 7 5 11 11 C 1.50694 * 109.47200 * 65.54614 * 10 8 7 12 12 H 1.08004 * 120.00085 * 4.99943 * 11 10 8 13 13 C 1.37882 * 120.00120 * 184.99175 * 11 10 8 14 14 N 1.31519 * 119.99935 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00019 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47219 * 90.00491 * 15 13 11 17 17 H 1.48502 * 109.47182 * 210.00167 * 15 13 11 18 18 H 1.48501 * 109.47187 * 330.00167 * 15 13 11 19 19 C 1.50696 * 109.47251 * 81.08844 * 8 7 5 20 20 C 1.38233 * 120.00258 * 219.99957 * 19 8 7 21 21 C 1.38230 * 120.00366 * 179.97438 * 20 19 8 22 22 C 1.38238 * 120.00112 * 359.95095 * 21 20 19 23 23 C 1.38234 * 119.99709 * 0.02562 * 22 21 20 24 24 C 1.38236 * 120.00242 * 0.06228 * 23 22 21 25 25 C 1.53008 * 109.46721 * 174.14815 * 3 2 1 26 26 H 1.08994 * 109.46997 * 174.57780 * 25 3 2 27 27 C 1.53002 * 109.46980 * 294.58291 * 25 3 2 28 28 O 1.42898 * 109.46903 * 54.57997 * 25 3 2 29 29 H 1.08999 * 109.46892 * 183.51592 * 1 2 3 30 30 H 1.09002 * 109.46959 * 303.51218 * 1 2 3 31 31 H 1.08999 * 109.47033 * 63.51327 * 1 2 3 32 32 H 1.09002 * 109.46806 * 240.00803 * 2 1 3 33 33 H 1.08997 * 109.47478 * 120.00150 * 2 1 3 34 34 H 0.96999 * 119.99822 * 3.25108 * 7 5 3 35 35 H 1.09003 * 109.47391 * 185.55249 * 10 8 7 36 36 H 1.09003 * 109.47116 * 305.54769 * 10 8 7 37 37 H 0.97001 * 119.99739 * 180.02562 * 14 13 11 38 38 H 1.08006 * 119.99704 * 359.97438 * 20 19 8 39 39 H 1.08001 * 120.00376 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.00091 * 179.72190 * 22 21 20 41 41 H 1.08006 * 119.99944 * 179.97438 * 23 22 21 42 42 H 1.07992 * 120.00175 * 179.97438 * 24 23 22 43 43 H 1.08996 * 109.47013 * 66.24034 * 27 25 3 44 44 H 1.08996 * 109.46609 * 186.23903 * 27 25 3 45 45 H 1.08999 * 109.46847 * 306.23406 * 27 25 3 46 46 H 0.96698 * 114.00680 * 300.00035 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5936 1.9857 0.8330 5 6 1.6594 2.1099 -1.2965 6 8 2.5184 2.4147 -2.0966 7 7 0.3645 2.3680 -1.5668 8 6 -0.0122 2.9516 -2.8567 9 1 0.7288 3.6954 -3.1494 10 6 -1.3835 3.6189 -2.7335 11 6 -1.2889 4.7910 -1.7912 12 1 -0.3304 5.0852 -1.3898 13 6 -2.4260 5.4881 -1.4417 14 7 -3.5933 5.1297 -1.9302 15 14 -2.3086 6.9416 -0.2742 16 1 -2.0857 8.1858 -1.0536 17 1 -3.5721 7.0604 0.4970 18 1 -1.1748 6.7341 0.6621 19 6 -0.0738 1.8662 -3.9003 20 6 0.4038 2.1053 -5.1753 21 6 0.3478 1.1095 -6.1324 22 6 -0.1849 -0.1258 -5.8143 23 6 -0.6620 -0.3651 -4.5392 24 6 -0.6077 0.6312 -3.5825 25 6 3.5629 1.4451 0.1471 26 1 3.9355 2.4648 0.0506 27 6 3.9435 0.8907 1.5214 28 8 4.1413 0.6282 -0.8728 29 1 -0.3633 -1.0257 0.0630 30 1 -0.3633 0.5674 0.8569 31 1 -0.3633 0.4583 -0.9198 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 -0.3179 2.1675 -0.9073 35 1 -1.7080 3.9663 -3.7144 36 1 -2.1045 2.8988 -2.3464 37 1 -4.3932 5.6204 -1.6846 38 1 0.8207 3.0702 -5.4236 39 1 0.7205 1.2964 -7.1287 40 1 -0.2327 -0.9024 -6.5634 41 1 -1.0785 -1.3302 -4.2907 42 1 -0.9808 0.4444 -2.5865 43 1 3.6693 -0.1627 1.5769 44 1 5.0182 0.9948 1.6702 45 1 3.4140 1.4453 2.2962 46 1 3.8537 -0.2947 -0.8478 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419949081.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:36:00 Heat of formation + Delta-G solvation = -80.570480 kcal Electronic energy + Delta-G solvation = -26286.222336 eV Core-core repulsion = 22754.034958 eV Total energy + Delta-G solvation = -3532.187378 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.11272 -38.77279 -37.21496 -35.11446 -34.19642 -32.65052 -31.04178 -30.59402 -30.42700 -28.77772 -27.36550 -24.93148 -23.15154 -22.24345 -21.99911 -21.55271 -19.75042 -19.51909 -17.24050 -16.58393 -16.42931 -16.19411 -15.54602 -15.31523 -14.88467 -14.70014 -14.55249 -14.09080 -13.97010 -13.45106 -13.21550 -13.06934 -12.78927 -12.58080 -12.50645 -12.25324 -12.10431 -12.02457 -11.86362 -11.53229 -11.19324 -11.11726 -11.00545 -10.85490 -10.67602 -10.60337 -10.50572 -10.44164 -9.95501 -9.73376 -9.32137 -9.11106 -8.52055 -8.45975 -8.30905 -8.14103 -6.10616 -4.13999 1.81323 1.83187 3.21801 3.25834 3.32957 3.35696 3.74985 4.25969 4.38313 4.44195 4.70974 4.77908 4.95557 5.07495 5.18940 5.25609 5.26902 5.28905 5.36758 5.41405 5.43747 5.53522 5.60364 5.65958 5.71638 5.84315 5.91986 5.97087 5.97686 6.10060 6.16430 6.21551 6.28446 6.40789 6.48315 6.61052 6.87518 6.88335 6.98628 7.14847 7.43606 7.49500 7.63931 7.76490 7.86249 8.20543 8.26733 8.88801 8.91997 9.50941 10.99806 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.009214 B = 0.006214 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3038.262490 B = 4504.956569 C = 6516.372772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.116 4.116 3 C -0.146 4.146 4 H 0.100 0.900 5 C 0.514 3.486 6 O -0.532 6.532 7 N -0.704 5.704 8 C 0.183 3.817 9 H 0.083 0.917 10 C 0.023 3.977 11 C -0.520 4.520 12 H 0.058 0.942 13 C 0.060 3.940 14 N -0.892 5.892 15 Si 0.891 3.109 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.068 4.068 20 C -0.108 4.108 21 C -0.122 4.122 22 C -0.135 4.135 23 C -0.125 4.125 24 C -0.111 4.111 25 C 0.124 3.876 26 H 0.102 0.898 27 C -0.185 4.185 28 O -0.544 6.544 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.401 0.599 35 H 0.030 0.970 36 H 0.027 0.973 37 H 0.262 0.738 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.030 -12.907 3.163 15.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.154 4.154 3 C -0.167 4.167 4 H 0.118 0.882 5 C 0.299 3.701 6 O -0.409 6.409 7 N -0.356 5.356 8 C 0.078 3.922 9 H 0.101 0.899 10 C -0.014 4.014 11 C -0.558 4.558 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.530 5.530 15 Si 0.719 3.281 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.069 4.069 20 C -0.126 4.126 21 C -0.140 4.140 22 C -0.154 4.154 23 C -0.143 4.143 24 C -0.129 4.129 25 C 0.064 3.936 26 H 0.120 0.880 27 C -0.243 4.243 28 O -0.348 6.348 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.238 0.762 35 H 0.049 0.951 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.137 0.863 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.135 0.865 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 8.733 -12.062 2.433 15.089 hybrid contribution -0.855 0.296 1.171 1.480 sum 7.878 -11.766 3.605 14.611 Atomic orbital electron populations 1.22187 0.95061 1.02447 1.03431 1.21482 0.97000 0.94461 1.02452 1.22203 0.98648 0.97975 0.97906 0.88184 1.20275 0.82932 0.79006 0.87909 1.90700 1.49066 1.51967 1.49123 1.46315 1.07525 1.63230 1.18491 1.20207 1.00921 0.91087 0.79957 0.89879 1.19383 0.88414 0.95421 0.98156 1.21143 0.93653 1.13506 1.27523 0.92413 1.24989 0.95392 0.97432 0.96319 1.69962 0.98341 1.40482 1.44251 0.86602 0.77366 0.83075 0.81022 1.20615 1.21251 1.19901 1.20541 0.95604 0.95430 0.95353 1.21011 0.99354 0.99177 0.93084 1.21033 1.00307 0.93694 0.98979 1.20980 1.00704 0.97107 0.96570 1.21023 1.00682 0.98838 0.93770 1.20973 0.99536 0.93131 0.99224 1.21621 0.89542 0.96036 0.86361 0.88047 1.22572 1.02358 1.01624 0.97738 1.86722 1.70593 1.23355 1.54113 0.92244 0.92026 0.90802 0.91336 0.90901 0.76159 0.95139 0.95439 0.92873 0.86269 0.86666 0.86901 0.86829 0.86474 0.92150 0.91805 0.91521 0.79043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 8.86 37.16 0.33 -1.52 16 2 C -0.12 -1.20 4.65 -26.73 -0.12 -1.32 16 3 C -0.15 -1.87 2.07 -91.76 -0.19 -2.06 16 4 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 5 C 0.51 9.02 6.81 -10.98 -0.07 8.95 16 6 O -0.53 -11.41 15.06 -11.24 -0.17 -11.58 16 7 N -0.70 -12.66 3.03 -54.93 -0.17 -12.82 16 8 C 0.18 3.75 2.09 -69.09 -0.14 3.61 16 9 H 0.08 1.89 7.52 -51.93 -0.39 1.49 16 10 C 0.02 0.56 4.47 -27.89 -0.12 0.44 16 11 C -0.52 -13.71 8.85 -34.44 -0.30 -14.01 16 12 H 0.06 1.53 7.75 -52.48 -0.41 1.12 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -25.37 13.29 55.43 0.74 -24.63 16 15 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 C -0.07 -1.28 4.86 -104.62 -0.51 -1.79 16 20 C -0.11 -1.92 9.67 -39.59 -0.38 -2.31 16 21 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 22 C -0.14 -1.96 10.05 -39.58 -0.40 -2.36 16 23 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 24 C -0.11 -1.86 9.32 -39.58 -0.37 -2.23 16 25 C 0.12 1.57 2.90 -26.73 -0.08 1.49 16 26 H 0.10 1.47 8.06 -51.93 -0.42 1.05 16 27 C -0.19 -1.69 9.15 37.16 0.34 -1.35 16 28 O -0.54 -7.71 12.32 -52.03 -0.64 -8.35 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.93 3.15 -51.93 -0.16 0.77 16 32 H 0.07 0.75 7.04 -51.93 -0.37 0.38 16 33 H 0.07 0.59 6.46 -51.93 -0.34 0.25 16 34 H 0.40 6.78 6.27 -40.82 -0.26 6.52 16 35 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.12 2.06 8.04 -52.48 -0.42 1.64 16 39 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 40 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 42 H 0.12 1.84 5.49 -52.49 -0.29 1.56 16 43 H 0.06 0.46 6.76 -51.93 -0.35 0.11 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.36 3.86 7.32 45.56 0.33 4.19 16 LS Contribution 367.19 15.07 5.53 5.53 Total: -1.00 -31.99 367.19 -9.08 -41.07 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -6.43 Total: 12.37 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -2.92 Total: -17.45 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.57 Total: -37.45 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.81 Total: -19.93 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.99 -9.08 -41.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419949081.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.503 kcal (2) G-P(sol) polarization free energy of solvation -31.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds