Wall clock time and date at job start Fri Apr 10 2020 21:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46711 * 2 1 4 4 H 1.08998 * 109.47133 * 54.15217 * 3 2 1 5 5 C 1.50703 * 109.47158 * 294.14356 * 3 2 1 6 6 O 1.21283 * 120.00108 * 247.96459 * 5 3 2 7 7 N 1.34777 * 119.99671 * 67.97141 * 5 3 2 8 8 C 1.46497 * 119.99680 * 183.24621 * 7 5 3 9 9 H 1.09000 * 109.47398 * 321.08474 * 8 7 5 10 10 C 1.53001 * 109.46919 * 201.08436 * 8 7 5 11 11 C 1.50694 * 109.47200 * 65.54614 * 10 8 7 12 12 H 1.08004 * 120.00085 * 4.99943 * 11 10 8 13 13 C 1.37882 * 120.00120 * 184.99175 * 11 10 8 14 14 N 1.31519 * 119.99935 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00019 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47219 * 90.00491 * 15 13 11 17 17 H 1.48502 * 109.47182 * 210.00167 * 15 13 11 18 18 H 1.48501 * 109.47187 * 330.00167 * 15 13 11 19 19 C 1.50696 * 109.47251 * 81.08844 * 8 7 5 20 20 C 1.38233 * 120.00258 * 219.99957 * 19 8 7 21 21 C 1.38230 * 120.00366 * 179.97438 * 20 19 8 22 22 C 1.38238 * 120.00112 * 359.95095 * 21 20 19 23 23 C 1.38234 * 119.99709 * 0.02562 * 22 21 20 24 24 C 1.38236 * 120.00242 * 0.06228 * 23 22 21 25 25 C 1.53008 * 109.46721 * 174.14815 * 3 2 1 26 26 H 1.08994 * 109.46997 * 174.57780 * 25 3 2 27 27 C 1.53002 * 109.46980 * 294.58291 * 25 3 2 28 28 O 1.42898 * 109.46903 * 54.57997 * 25 3 2 29 29 H 1.08999 * 109.46892 * 183.51592 * 1 2 3 30 30 H 1.09002 * 109.46959 * 303.51218 * 1 2 3 31 31 H 1.08999 * 109.47033 * 63.51327 * 1 2 3 32 32 H 1.09002 * 109.46806 * 240.00803 * 2 1 3 33 33 H 1.08997 * 109.47478 * 120.00150 * 2 1 3 34 34 H 0.96999 * 119.99822 * 3.25108 * 7 5 3 35 35 H 1.09003 * 109.47391 * 185.55249 * 10 8 7 36 36 H 1.09003 * 109.47116 * 305.54769 * 10 8 7 37 37 H 0.97001 * 119.99739 * 180.02562 * 14 13 11 38 38 H 1.08006 * 119.99704 * 359.97438 * 20 19 8 39 39 H 1.08001 * 120.00376 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.00091 * 179.72190 * 22 21 20 41 41 H 1.08006 * 119.99944 * 179.97438 * 23 22 21 42 42 H 1.07992 * 120.00175 * 179.97438 * 24 23 22 43 43 H 1.08996 * 109.47013 * 66.24034 * 27 25 3 44 44 H 1.08996 * 109.46609 * 186.23903 * 27 25 3 45 45 H 1.08999 * 109.46847 * 306.23406 * 27 25 3 46 46 H 0.96698 * 114.00680 * 300.00035 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5936 1.9857 0.8330 5 6 1.6594 2.1099 -1.2965 6 8 2.5184 2.4147 -2.0966 7 7 0.3645 2.3680 -1.5668 8 6 -0.0122 2.9516 -2.8567 9 1 0.7288 3.6954 -3.1494 10 6 -1.3835 3.6189 -2.7335 11 6 -1.2889 4.7910 -1.7912 12 1 -0.3304 5.0852 -1.3898 13 6 -2.4260 5.4881 -1.4417 14 7 -3.5933 5.1297 -1.9302 15 14 -2.3086 6.9416 -0.2742 16 1 -2.0857 8.1858 -1.0536 17 1 -3.5721 7.0604 0.4970 18 1 -1.1748 6.7341 0.6621 19 6 -0.0738 1.8662 -3.9003 20 6 0.4038 2.1053 -5.1753 21 6 0.3478 1.1095 -6.1324 22 6 -0.1849 -0.1258 -5.8143 23 6 -0.6620 -0.3651 -4.5392 24 6 -0.6077 0.6312 -3.5825 25 6 3.5629 1.4451 0.1471 26 1 3.9355 2.4648 0.0506 27 6 3.9435 0.8907 1.5214 28 8 4.1413 0.6282 -0.8728 29 1 -0.3633 -1.0257 0.0630 30 1 -0.3633 0.5674 0.8569 31 1 -0.3633 0.4583 -0.9198 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 -0.3179 2.1675 -0.9073 35 1 -1.7080 3.9663 -3.7144 36 1 -2.1045 2.8988 -2.3464 37 1 -4.3932 5.6204 -1.6846 38 1 0.8207 3.0702 -5.4236 39 1 0.7205 1.2964 -7.1287 40 1 -0.2327 -0.9024 -6.5634 41 1 -1.0785 -1.3302 -4.2907 42 1 -0.9808 0.4444 -2.5865 43 1 3.6693 -0.1627 1.5769 44 1 5.0182 0.9948 1.6702 45 1 3.4140 1.4453 2.2962 46 1 3.8537 -0.2947 -0.8478 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419949081.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:35:59 Heat of formation + Delta-G solvation = -99.846411 kcal Electronic energy + Delta-G solvation = -26287.058203 eV Core-core repulsion = 22754.034958 eV Total energy + Delta-G solvation = -3533.023245 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.44762 -40.01945 -38.41448 -36.72107 -35.34250 -34.55308 -32.32757 -31.70319 -31.56504 -30.52373 -28.37827 -26.67840 -24.15463 -23.69532 -23.42939 -22.74993 -21.18280 -20.78177 -18.76402 -18.17002 -17.70240 -17.56690 -16.77755 -16.58260 -16.41095 -16.17147 -15.80436 -15.29296 -15.12147 -14.78447 -14.45045 -14.41161 -14.14837 -14.02438 -13.69603 -13.59514 -13.44129 -13.10390 -12.94260 -12.84851 -12.76508 -12.66092 -12.47428 -12.14574 -12.11584 -11.93131 -11.68103 -11.56602 -11.45361 -11.32729 -10.95619 -10.66736 -10.47378 -9.86296 -9.74859 -9.50385 -8.21711 -6.32307 0.52017 0.56203 1.38105 1.40100 1.50007 1.83956 2.38512 2.39359 2.98159 3.12045 3.51419 3.67076 3.81764 3.93046 4.00854 4.05860 4.17997 4.23814 4.31066 4.35065 4.40659 4.52044 4.58693 4.63869 4.68185 4.76045 4.78337 4.84575 4.94574 5.08819 5.12766 5.16788 5.18426 5.26785 5.29695 5.35319 5.41740 5.45283 5.61404 5.64223 5.64936 5.76318 5.93338 6.15440 6.20349 6.78278 6.80041 6.91640 7.36499 7.47329 8.88867 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.009214 B = 0.006214 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3038.262490 B = 4504.956569 C = 6516.372772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.108 4.108 3 C -0.137 4.137 4 H 0.115 0.885 5 C 0.508 3.492 6 O -0.578 6.578 7 N -0.698 5.698 8 C 0.197 3.803 9 H 0.049 0.951 10 C 0.039 3.961 11 C -0.531 4.531 12 H 0.051 0.949 13 C 0.013 3.987 14 N -0.924 5.924 15 Si 0.956 3.044 16 H -0.280 1.280 17 H -0.278 1.278 18 H -0.266 1.266 19 C -0.096 4.096 20 C -0.136 4.136 21 C -0.124 4.124 22 C -0.129 4.129 23 C -0.123 4.123 24 C -0.121 4.121 25 C 0.123 3.877 26 H 0.072 0.928 27 C -0.174 4.174 28 O -0.569 6.569 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.407 0.593 35 H -0.001 1.001 36 H 0.015 0.985 37 H 0.265 0.735 38 H 0.108 0.892 39 H 0.142 0.858 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.124 0.876 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.079 0.921 46 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.151 -15.254 4.564 17.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.145 4.145 3 C -0.158 4.158 4 H 0.133 0.867 5 C 0.296 3.704 6 O -0.457 6.457 7 N -0.350 5.350 8 C 0.092 3.908 9 H 0.067 0.933 10 C 0.001 3.999 11 C -0.569 4.569 12 H 0.069 0.931 13 C -0.186 4.186 14 N -0.564 5.564 15 Si 0.782 3.218 16 H -0.206 1.206 17 H -0.204 1.204 18 H -0.190 1.190 19 C -0.097 4.097 20 C -0.155 4.155 21 C -0.142 4.142 22 C -0.147 4.147 23 C -0.141 4.141 24 C -0.139 4.139 25 C 0.063 3.937 26 H 0.090 0.910 27 C -0.231 4.231 28 O -0.375 6.375 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.126 0.874 34 H 0.245 0.755 35 H 0.017 0.983 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.126 0.874 39 H 0.159 0.841 40 H 0.169 0.831 41 H 0.166 0.834 42 H 0.142 0.858 43 H 0.101 0.899 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 8.848 -14.428 3.854 17.358 hybrid contribution -0.892 0.998 0.640 1.484 sum 7.955 -13.430 4.494 16.244 Atomic orbital electron populations 1.22189 0.95231 1.03498 1.02349 1.21491 0.96716 0.92434 1.03864 1.22260 0.99131 0.99432 0.95002 0.86682 1.21193 0.81861 0.78151 0.89192 1.90673 1.50055 1.53853 1.51120 1.46253 1.08236 1.62854 1.17655 1.19679 0.97553 0.91432 0.82128 0.93294 1.19113 0.90193 0.94766 0.95781 1.21374 0.93416 1.14330 1.27784 0.93084 1.25772 0.94978 1.00015 0.97857 1.70070 0.99009 1.41784 1.45505 0.85582 0.77786 0.79446 0.79036 1.20578 1.20375 1.19002 1.20435 0.98076 0.95933 0.95226 1.21154 1.00635 0.99886 0.93776 1.21365 0.99817 0.93515 0.99496 1.21461 0.98727 0.97307 0.97214 1.21440 0.99679 0.99532 0.93413 1.21146 0.99578 0.92853 1.00354 1.21620 0.88976 0.94934 0.88167 0.91038 1.22469 1.02606 1.02870 0.95196 1.86682 1.71055 1.24644 1.55153 0.90331 0.91441 0.93267 0.91887 0.87379 0.75469 0.98314 0.96681 0.92654 0.87424 0.84054 0.83077 0.83416 0.85844 0.89915 0.91708 0.90251 0.77362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.35 8.86 71.98 0.64 -2.71 16 2 C -0.11 -1.94 4.65 30.60 0.14 -1.80 16 3 C -0.14 -3.37 2.07 -11.53 -0.02 -3.40 16 4 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 5 C 0.51 18.43 6.81 87.66 0.60 19.03 16 6 O -0.58 -26.11 15.06 13.02 0.20 -25.92 16 7 N -0.70 -26.21 3.03 -446.10 -1.35 -27.56 16 8 C 0.20 8.70 2.09 44.24 0.09 8.79 16 9 H 0.05 2.44 7.52 -2.39 -0.02 2.43 16 10 C 0.04 1.98 4.47 29.85 0.13 2.12 16 11 C -0.53 -29.11 8.85 25.60 0.23 -28.89 16 12 H 0.05 2.81 7.75 -2.91 -0.02 2.79 16 13 C 0.01 0.70 5.46 84.66 0.46 1.16 16 14 N -0.92 -53.72 13.29 21.45 0.28 -53.44 16 15 Si 0.96 43.27 29.54 68.60 2.03 45.30 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 17 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 19 C -0.10 -3.77 4.86 -19.87 -0.10 -3.87 16 20 C -0.14 -5.09 9.67 22.27 0.22 -4.88 16 21 C -0.12 -3.72 10.05 22.27 0.22 -3.50 16 22 C -0.13 -3.39 10.05 22.27 0.22 -3.16 16 23 C -0.12 -3.39 10.05 22.27 0.22 -3.16 16 24 C -0.12 -4.09 9.32 22.27 0.21 -3.88 16 25 C 0.12 3.00 2.90 30.60 0.09 3.09 16 26 H 0.07 2.15 8.06 -2.39 -0.02 2.13 16 27 C -0.17 -2.68 9.15 71.98 0.66 -2.02 16 28 O -0.57 -15.86 12.32 -132.92 -1.64 -17.50 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.20 3.15 -2.39 -0.01 1.19 16 32 H 0.06 1.24 7.04 -2.39 -0.02 1.22 16 33 H 0.11 1.25 6.46 -2.39 -0.02 1.23 16 34 H 0.41 14.16 6.27 -92.71 -0.58 13.58 16 35 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 36 H 0.01 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 38 H 0.11 4.09 8.04 -2.91 -0.02 4.07 16 39 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 40 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 41 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 42 H 0.12 3.90 5.49 -2.91 -0.02 3.88 16 43 H 0.08 0.92 6.76 -2.39 -0.02 0.90 16 44 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 46 H 0.38 7.47 7.32 -74.06 -0.54 6.93 16 Total: -1.00 -73.04 367.19 3.40 -69.64 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: -0.14 Total: 36.55 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 4.01 Total: -27.08 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -1.07 Total: -80.99 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -1.44 Total: -43.42 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -73.04 3.40 -69.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419949081.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.203 kcal (2) G-P(sol) polarization free energy of solvation -73.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds