Wall clock time and date at job start Fri Apr 10 2020 21:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47230 * 2 1 4 4 N 1.46497 * 109.46967 * 179.97438 * 3 2 1 5 5 C 1.36937 * 119.99953 * 89.69050 * 4 3 2 6 6 H 1.07992 * 120.00120 * 33.59476 * 5 4 3 7 7 C 1.38822 * 119.99560 * 213.59911 * 5 4 3 8 8 N 1.31614 * 120.00064 * 23.05983 * 7 5 4 9 9 Si 1.86800 * 119.99570 * 203.05743 * 7 5 4 10 10 H 1.48499 * 109.46881 * 60.00408 * 9 7 5 11 11 H 1.48501 * 109.46864 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47307 * 300.00092 * 9 7 5 13 13 C 1.46501 * 119.99810 * 269.40940 * 4 3 2 14 14 C 1.53002 * 109.47244 * 270.27361 * 13 4 3 15 15 C 1.53004 * 109.47325 * 179.97438 * 14 13 4 16 16 H 1.09000 * 109.46428 * 55.00691 * 15 14 13 17 17 C 1.50701 * 109.47327 * 295.00769 * 15 14 13 18 18 O 1.20828 * 119.99641 * 359.97438 * 17 15 14 19 19 O 1.34222 * 119.99985 * 179.97438 * 17 15 14 20 20 C 1.45198 * 117.00258 * 179.97438 * 19 17 15 21 21 C 1.50693 * 109.47097 * 175.00325 * 15 14 13 22 22 C 1.38238 * 120.00367 * 59.72808 * 21 15 14 23 23 C 1.38233 * 120.00327 * 179.80546 * 22 21 15 24 24 C 1.38233 * 119.99603 * 0.40528 * 23 22 21 25 25 C 1.38231 * 120.00572 * 359.85333 * 24 23 22 26 26 C 1.38237 * 119.99883 * 240.00454 * 21 15 14 27 27 H 1.09004 * 109.46793 * 299.99991 * 1 2 3 28 28 H 1.09001 * 109.46804 * 59.99685 * 1 2 3 29 29 H 1.08997 * 109.47349 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47024 * 239.99550 * 2 1 3 31 31 H 1.09004 * 109.46974 * 119.99563 * 2 1 3 32 32 H 1.09000 * 109.47091 * 59.99784 * 3 2 1 33 33 H 1.08992 * 109.46953 * 300.00021 * 3 2 1 34 34 H 0.97001 * 119.99778 * 180.02562 * 8 7 5 35 35 H 1.08993 * 109.47271 * 30.27783 * 13 4 3 36 36 H 1.09001 * 109.46987 * 150.28172 * 13 4 3 37 37 H 1.08993 * 109.47331 * 300.00385 * 14 13 4 38 38 H 1.09008 * 109.46820 * 60.00405 * 14 13 4 39 39 H 1.08995 * 109.47343 * 179.97438 * 20 19 17 40 40 H 1.08999 * 109.46871 * 299.99760 * 20 19 17 41 41 H 1.09001 * 109.47168 * 59.99946 * 20 19 17 42 42 H 1.08000 * 119.99652 * 359.97438 * 22 21 15 43 43 H 1.07998 * 120.00020 * 180.23091 * 23 22 21 44 44 H 1.08006 * 119.99880 * 179.82921 * 24 23 22 45 45 H 1.07995 * 120.00215 * 179.97438 * 25 24 23 46 46 H 1.07994 * 120.00398 * 359.97438 * 26 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1902 1.4358 -1.1850 6 1 3.7859 1.9486 -2.0452 7 6 5.4045 0.7699 -1.2811 8 7 5.6898 -0.2028 -0.4417 9 14 6.6333 1.2545 -2.6019 10 1 7.0178 2.6776 -2.4220 11 1 7.8416 0.3982 -2.4920 12 1 6.0179 1.0735 -3.9411 13 6 4.2369 1.4557 1.2696 14 6 4.4859 2.9027 1.6998 15 6 5.2497 2.9166 3.0254 16 1 6.1629 2.3300 2.9246 17 6 4.3873 2.3213 4.1084 18 8 3.2755 1.9270 3.8469 19 8 4.8541 2.2293 5.3635 20 6 3.9685 1.6458 6.3552 21 6 5.6021 4.3363 3.3873 22 6 4.6013 5.2736 3.5634 23 6 4.9244 6.5750 3.8993 24 6 6.2487 6.9412 4.0509 25 6 7.2498 6.0054 3.8695 26 6 6.9265 4.7029 3.5375 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 6.5384 -0.6679 -0.5087 35 1 3.6497 0.9456 2.0331 36 1 5.1916 0.9448 1.1438 37 1 5.0731 3.4129 0.9363 38 1 3.5312 3.4137 1.8256 39 1 4.4676 1.6307 7.3240 40 1 3.0581 2.2411 6.4243 41 1 3.7151 0.6271 6.0615 42 1 3.5669 4.9883 3.4413 43 1 4.1423 7.3062 4.0406 44 1 6.5012 7.9586 4.3106 45 1 8.2844 6.2916 3.9875 46 1 7.7086 3.9718 3.3960 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425408501.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:36:05 Heat of formation + Delta-G solvation = -53.571808 kcal Electronic energy + Delta-G solvation = -25844.575842 eV Core-core repulsion = 22313.559215 eV Total energy + Delta-G solvation = -3531.016628 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.52844 -38.96033 -36.72376 -35.87937 -34.06996 -32.69805 -30.89286 -30.78852 -29.37031 -27.98356 -25.90177 -25.40946 -22.99216 -22.54459 -22.06414 -21.17613 -19.89080 -19.45037 -17.51264 -17.01132 -16.49513 -16.30241 -15.93214 -15.04066 -14.75547 -14.62129 -14.17330 -13.92332 -13.66522 -13.36097 -13.30353 -13.05784 -12.90977 -12.60058 -12.55464 -12.02301 -11.87678 -11.77821 -11.44566 -11.15622 -11.05464 -10.90051 -10.84638 -10.68793 -10.67538 -10.53210 -10.35143 -10.11545 -10.07843 -9.75811 -9.53789 -9.31940 -8.84510 -8.62162 -8.38545 -6.50519 -5.69990 -3.22817 1.38536 1.47528 2.52754 2.97340 3.40561 3.46247 3.48998 3.86361 4.54305 4.78365 4.90536 5.03095 5.11417 5.18138 5.19007 5.26274 5.32208 5.41102 5.52405 5.56504 5.64677 5.69041 5.85396 5.87833 5.96397 6.06960 6.10702 6.28804 6.39567 6.45719 6.48588 6.55561 6.57439 6.63132 6.65602 6.70076 6.76007 6.86325 6.97267 7.05905 7.19520 7.31981 7.39407 7.81136 7.90886 8.08523 8.58524 9.28171 9.93134 10.50926 11.29515 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.010537 B = 0.005264 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.573496 B = 5317.947010 C = 6680.171335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.139 4.139 3 C 0.150 3.850 4 N -0.583 5.583 5 C -0.252 4.252 6 H 0.060 0.940 7 C 0.007 3.993 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.282 1.282 13 C 0.137 3.863 14 C -0.114 4.114 15 C -0.038 4.038 16 H 0.114 0.886 17 C 0.469 3.531 18 O -0.489 6.489 19 O -0.361 6.361 20 C 0.035 3.965 21 C -0.066 4.066 22 C -0.109 4.109 23 C -0.119 4.119 24 C -0.125 4.125 25 C -0.120 4.120 26 C -0.105 4.105 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.040 0.960 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.035 0.965 33 H 0.037 0.963 34 H 0.253 0.747 35 H 0.040 0.960 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.235 9.216 12.632 15.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.179 4.179 3 C 0.023 3.977 4 N -0.303 5.303 5 C -0.382 4.382 6 H 0.078 0.922 7 C -0.192 4.192 8 N -0.532 5.532 9 Si 0.722 3.278 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.209 1.209 13 C 0.011 3.989 14 C -0.154 4.154 15 C -0.058 4.058 16 H 0.132 0.868 17 C 0.311 3.689 18 O -0.375 6.375 19 O -0.278 6.278 20 C -0.059 4.059 21 C -0.066 4.066 22 C -0.127 4.127 23 C -0.137 4.137 24 C -0.143 4.143 25 C -0.138 4.138 26 C -0.123 4.123 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.114 0.886 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.461 8.957 12.569 15.441 hybrid contribution 0.556 0.054 -0.570 0.798 sum 0.094 9.011 11.999 15.006 Atomic orbital electron populations 1.21754 0.97973 1.00137 1.00582 1.22070 0.92880 1.01080 1.01849 1.20903 0.85474 0.93321 0.97984 1.43815 0.99337 1.84837 1.02262 1.19062 1.02461 1.26215 0.90436 0.92237 1.25035 1.00708 0.95423 0.98077 1.69988 1.23329 1.20530 1.39322 0.86524 0.81138 0.78137 0.81988 1.21020 1.21714 1.20865 1.21136 1.00208 0.91141 0.86422 1.22237 0.98378 1.03817 0.90935 1.20232 1.00038 0.92691 0.92804 0.86825 1.23754 0.86814 0.75823 0.82524 1.90664 1.20695 1.44288 1.81807 1.86535 1.47024 1.74820 1.19384 1.23188 0.94086 0.98550 0.90061 1.19558 0.93731 0.94152 0.99149 1.21053 0.99239 0.93261 0.99196 1.21073 0.96445 0.96014 1.00207 1.21107 0.93047 0.99296 1.00888 1.21097 0.99206 0.93342 1.00177 1.21097 0.95558 0.96571 0.99072 0.93687 0.93539 0.94040 0.92139 0.93123 0.94694 0.94420 0.93700 0.94214 0.88760 0.90784 0.92683 0.88600 0.92251 0.91931 0.86178 0.86224 0.86362 0.86107 0.85680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.91 37.16 0.37 -2.11 16 2 C -0.14 -2.95 6.26 -26.73 -0.17 -3.11 16 3 C 0.15 3.35 5.67 -4.04 -0.02 3.33 16 4 N -0.58 -14.80 2.45 -173.24 -0.42 -15.22 16 5 C -0.25 -6.90 9.49 -15.06 -0.14 -7.05 16 6 H 0.06 1.64 7.93 -52.49 -0.42 1.22 16 7 C 0.01 0.19 4.95 -17.43 -0.09 0.11 16 8 N -0.89 -25.43 11.31 55.49 0.63 -24.80 16 9 Si 0.89 21.54 29.61 -169.99 -5.03 16.51 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.14 3.28 5.03 -4.04 -0.02 3.26 16 14 C -0.11 -2.29 4.39 -26.73 -0.12 -2.40 16 15 C -0.04 -0.64 2.48 -92.92 -0.23 -0.87 16 16 H 0.11 1.87 7.88 -51.93 -0.41 1.46 16 17 C 0.47 8.11 6.61 36.01 0.24 8.34 16 18 O -0.49 -9.63 13.72 -18.75 -0.26 -9.89 16 19 O -0.36 -5.46 10.48 -39.24 -0.41 -5.87 16 20 C 0.04 0.41 10.56 101.05 1.07 1.48 16 21 C -0.07 -0.98 4.71 -104.63 -0.49 -1.48 16 22 C -0.11 -1.56 8.87 -39.58 -0.35 -1.91 16 23 C -0.12 -1.45 10.05 -39.59 -0.40 -1.84 16 24 C -0.13 -1.41 10.05 -39.59 -0.40 -1.80 16 25 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 26 C -0.10 -1.40 9.67 -39.58 -0.38 -1.78 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 33 H 0.04 0.82 8.04 -51.93 -0.42 0.41 16 34 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.04 0.97 5.89 -51.93 -0.31 0.67 16 36 H 0.09 2.51 5.31 -51.93 -0.28 2.23 16 37 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 38 H 0.05 1.11 7.37 -51.92 -0.38 0.73 16 39 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 41 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 42 H 0.12 1.74 7.62 -52.49 -0.40 1.34 16 43 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 44 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 45 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 46 H 0.13 1.50 7.95 -52.49 -0.42 1.08 16 LS Contribution 379.44 15.07 5.72 5.72 Total: -1.00 -30.87 379.44 -8.97 -39.84 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -7.65 Total: 3.36 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -1.53 Total: -9.65 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.20 Total: -40.02 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.67 Total: -15.77 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.87 -8.97 -39.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425408501.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.733 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds