Wall clock time and date at job start Fri Apr 10 2020 21:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47163 * 2 1 4 4 N 1.46497 * 109.47150 * 179.97438 * 3 2 1 5 5 C 1.36937 * 120.00307 * 270.00002 * 4 3 2 6 6 H 1.08000 * 120.00099 * 141.35398 * 5 4 3 7 7 C 1.38811 * 120.00143 * 321.36094 * 5 4 3 8 8 N 1.31627 * 119.99581 * 339.27415 * 7 5 4 9 9 Si 1.86802 * 120.00448 * 159.26878 * 7 5 4 10 10 H 1.48505 * 109.46819 * 89.99839 * 9 7 5 11 11 H 1.48500 * 109.47221 * 209.99951 * 9 7 5 12 12 H 1.48495 * 109.47119 * 330.00431 * 9 7 5 13 13 C 1.46499 * 120.00131 * 90.00061 * 4 3 2 14 14 C 1.53004 * 109.47149 * 264.65518 * 13 4 3 15 15 C 1.53001 * 109.47002 * 179.97438 * 14 13 4 16 16 H 1.09002 * 109.47552 * 305.00373 * 15 14 13 17 17 C 1.50701 * 109.47082 * 64.99911 * 15 14 13 18 18 O 1.20829 * 120.00041 * 119.99894 * 17 15 14 19 19 O 1.34228 * 120.00087 * 300.00078 * 17 15 14 20 20 C 1.45208 * 117.00279 * 179.97438 * 19 17 15 21 21 C 1.50699 * 109.47369 * 184.99959 * 15 14 13 22 22 C 1.38236 * 119.99584 * 299.72806 * 21 15 14 23 23 C 1.38233 * 119.99746 * 179.78224 * 22 21 15 24 24 C 1.38236 * 119.99906 * 0.44670 * 23 22 21 25 25 C 1.38237 * 120.00054 * 359.80761 * 24 23 22 26 26 C 1.38230 * 120.00199 * 120.00132 * 21 15 14 27 27 H 1.09000 * 109.47353 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47275 * 300.00084 * 1 2 3 29 29 H 1.09002 * 109.47438 * 60.00279 * 1 2 3 30 30 H 1.09004 * 109.47364 * 240.00176 * 2 1 3 31 31 H 1.08997 * 109.47056 * 119.99981 * 2 1 3 32 32 H 1.09004 * 109.46837 * 59.99854 * 3 2 1 33 33 H 1.08997 * 109.47119 * 299.99943 * 3 2 1 34 34 H 0.97003 * 119.99219 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47357 * 144.65128 * 13 4 3 36 36 H 1.09000 * 109.46704 * 24.65191 * 13 4 3 37 37 H 1.08995 * 109.47066 * 60.00249 * 14 13 4 38 38 H 1.09000 * 109.47050 * 299.99461 * 14 13 4 39 39 H 1.09003 * 109.46810 * 59.99800 * 20 19 17 40 40 H 1.08994 * 109.47161 * 180.02562 * 20 19 17 41 41 H 1.08997 * 109.46993 * 300.00251 * 20 19 17 42 42 H 1.07999 * 120.00603 * 359.97438 * 22 21 15 43 43 H 1.07998 * 120.00267 * 180.27556 * 23 22 21 44 44 H 1.08004 * 119.99915 * 179.82711 * 24 23 22 45 45 H 1.07997 * 119.99852 * 179.97438 * 25 24 23 46 46 H 1.08000 * 119.99574 * 359.97438 * 26 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1892 1.4427 1.1868 6 1 5.0918 0.8586 1.2896 7 6 3.7227 2.1935 2.2571 8 7 2.8976 3.1973 2.0468 9 14 4.2655 1.7792 3.9958 10 1 5.4998 2.5375 4.3228 11 1 3.1902 2.1480 4.9512 12 1 4.5383 0.3230 4.0955 13 6 4.2380 1.4424 -1.2678 14 6 4.6095 0.0061 -1.6419 15 6 5.3746 0.0058 -2.9669 16 1 4.7829 0.5141 -3.7283 17 6 6.6875 0.7239 -2.7890 18 8 7.7268 0.1416 -2.9910 19 8 6.7025 2.0103 -2.4061 20 6 8.0031 2.6379 -2.2542 21 6 5.6334 -1.4150 -3.3974 22 6 6.3736 -2.2579 -2.5896 23 6 6.6071 -3.5625 -2.9824 24 6 6.1084 -4.0215 -4.1871 25 6 5.3726 -3.1770 -4.9973 26 6 5.1354 -1.8737 -4.6026 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 2.5719 3.7222 2.7947 35 1 5.1455 2.0369 -1.1630 36 1 3.6111 1.8709 -2.0497 37 1 3.7020 -0.5884 -1.7467 38 1 5.2364 -0.4225 -0.8600 39 1 8.5336 2.6093 -3.2060 40 1 7.8724 3.6738 -1.9416 41 1 8.5796 2.1013 -1.5007 42 1 6.7667 -1.8982 -1.6503 43 1 7.1816 -4.2224 -2.3493 44 1 6.2933 -5.0400 -4.4953 45 1 4.9833 -3.5354 -5.9388 46 1 4.5605 -1.2138 -5.2354 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425408502.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:36:10 Heat of formation + Delta-G solvation = -53.248507 kcal Electronic energy + Delta-G solvation = -25820.807635 eV Core-core repulsion = 22289.805027 eV Total energy + Delta-G solvation = -3531.002608 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.59966 -38.94879 -36.45186 -36.21847 -34.27978 -32.36298 -31.30695 -30.82239 -29.43164 -27.61478 -25.99948 -25.46660 -23.23215 -22.54533 -22.15224 -20.84484 -19.98409 -19.81478 -17.31677 -17.07278 -16.69540 -16.23592 -15.91541 -15.15090 -14.83932 -14.60015 -14.12772 -13.92768 -13.55323 -13.43773 -13.30078 -13.15893 -12.86588 -12.70696 -12.43103 -12.31176 -11.99389 -11.81197 -11.32121 -11.29651 -11.13848 -10.94410 -10.89750 -10.76447 -10.64259 -10.54828 -10.37325 -10.19132 -10.06799 -9.90302 -9.51107 -9.36595 -8.81782 -8.68631 -8.39413 -6.48042 -5.73273 -3.33202 1.37584 1.50488 2.45344 2.99473 3.36543 3.44436 3.47945 3.91022 4.49782 4.65449 4.85044 5.04053 5.08995 5.20134 5.23757 5.30628 5.36576 5.38837 5.39882 5.56403 5.65213 5.72426 5.77400 5.86402 5.96630 6.00427 6.07399 6.13127 6.25389 6.34596 6.47987 6.51262 6.57410 6.58258 6.61556 6.67808 6.68803 6.86961 6.90403 6.98205 7.06434 7.25551 7.33296 7.78826 7.86868 8.00414 8.58468 9.26068 9.87922 10.47078 11.25690 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012290 B = 0.004683 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.779618 B = 5977.906781 C = 6939.371076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.142 4.142 3 C 0.147 3.853 4 N -0.583 5.583 5 C -0.256 4.256 6 H 0.056 0.944 7 C 0.015 3.985 8 N -0.887 5.887 9 Si 0.892 3.108 10 H -0.286 1.286 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.139 3.861 14 C -0.126 4.126 15 C -0.042 4.042 16 H 0.111 0.889 17 C 0.471 3.529 18 O -0.512 6.512 19 O -0.340 6.340 20 C 0.035 3.965 21 C -0.066 4.066 22 C -0.082 4.082 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.126 4.126 26 C -0.111 4.111 27 H 0.038 0.962 28 H 0.049 0.951 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.021 0.979 34 H 0.253 0.747 35 H 0.068 0.932 36 H 0.035 0.965 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.101 0.899 41 H 0.061 0.939 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.705 -7.649 -12.262 14.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.181 4.181 3 C 0.021 3.979 4 N -0.302 5.302 5 C -0.386 4.386 6 H 0.073 0.927 7 C -0.186 4.186 8 N -0.529 5.529 9 Si 0.721 3.279 10 H -0.213 1.213 11 H -0.215 1.215 12 H -0.204 1.204 13 C 0.012 3.988 14 C -0.166 4.166 15 C -0.061 4.061 16 H 0.129 0.871 17 C 0.314 3.686 18 O -0.400 6.400 19 O -0.255 6.255 20 C -0.059 4.059 21 C -0.066 4.066 22 C -0.100 4.100 23 C -0.141 4.141 24 C -0.141 4.141 25 C -0.144 4.144 26 C -0.129 4.129 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.039 0.961 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.119 0.881 41 H 0.080 0.920 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.963 -7.625 -12.178 14.905 hybrid contribution 0.464 -0.259 0.969 1.105 sum 4.427 -7.884 -11.209 14.401 Atomic orbital electron populations 1.21705 0.97735 0.99842 1.01026 1.22176 0.93516 1.01869 1.00585 1.20956 0.83706 0.92045 1.01184 1.43737 1.00712 1.85135 1.00589 1.18909 1.08944 1.21816 0.88937 0.92674 1.25167 0.99648 0.94779 0.98957 1.70012 1.35609 1.17136 1.30133 0.86490 0.77875 0.78400 0.85143 1.21313 1.21518 1.20389 1.21123 0.97166 0.91687 0.88803 1.22416 0.99247 1.03312 0.91660 1.20119 0.92048 0.91436 1.02544 0.87114 1.23653 0.91882 0.80657 0.72387 1.90638 1.34972 1.67190 1.47192 1.86694 1.34265 1.26235 1.78341 1.23237 0.82936 0.98188 1.01567 1.19377 0.98437 0.94016 0.94814 1.20979 0.96398 0.93245 0.99350 1.21102 1.00359 0.95788 0.96813 1.21107 0.98516 0.99519 0.94912 1.21030 0.99650 0.93903 0.99786 1.20995 1.00175 0.96197 0.95526 0.94275 0.93157 0.93681 0.93996 0.92606 0.89178 0.96105 0.93674 0.91426 0.94684 0.90807 0.91601 0.92487 0.88088 0.92037 0.86218 0.86221 0.86406 0.86233 0.86051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.91 37.15 0.37 -2.05 16 2 C -0.14 -2.80 6.26 -26.73 -0.17 -2.96 16 3 C 0.15 3.38 5.33 -4.04 -0.02 3.36 16 4 N -0.58 -14.05 2.43 -173.24 -0.42 -14.47 16 5 C -0.26 -6.85 9.45 -15.06 -0.14 -6.99 16 6 H 0.06 1.49 7.91 -52.49 -0.42 1.07 16 7 C 0.01 0.40 4.96 -17.43 -0.09 0.32 16 8 N -0.89 -25.19 11.51 55.49 0.64 -24.55 16 9 Si 0.89 21.40 29.60 -169.99 -5.03 16.36 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.14 2.82 5.36 -4.04 -0.02 2.80 16 14 C -0.13 -2.19 4.71 -26.73 -0.13 -2.32 16 15 C -0.04 -0.62 2.50 -92.92 -0.23 -0.85 16 16 H 0.11 1.43 7.88 -51.93 -0.41 1.02 16 17 C 0.47 7.73 7.10 36.01 0.26 7.98 16 18 O -0.51 -9.20 14.84 -18.75 -0.28 -9.48 16 19 O -0.34 -5.49 7.71 -39.25 -0.30 -5.80 16 20 C 0.03 0.45 10.56 101.05 1.07 1.52 16 21 C -0.07 -0.96 4.40 -104.63 -0.46 -1.42 16 22 C -0.08 -1.21 7.98 -39.58 -0.32 -1.53 16 23 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 24 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 25 C -0.13 -1.43 10.05 -39.58 -0.40 -1.83 16 26 C -0.11 -1.39 9.67 -39.59 -0.38 -1.77 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.04 0.78 6.64 -51.93 -0.35 0.44 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.09 2.36 5.57 -51.93 -0.29 2.08 16 33 H 0.02 0.46 7.86 -51.93 -0.41 0.05 16 34 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.07 1.45 5.40 -51.93 -0.28 1.17 16 36 H 0.03 0.67 7.83 -51.93 -0.41 0.27 16 37 H 0.07 1.28 6.64 -51.93 -0.35 0.93 16 38 H 0.07 1.25 7.59 -51.93 -0.39 0.86 16 39 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 40 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 42 H 0.12 1.87 7.58 -52.49 -0.40 1.47 16 43 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 44 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 45 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 46 H 0.12 1.26 7.95 -52.49 -0.42 0.84 16 LS Contribution 374.03 15.07 5.64 5.64 Total: -1.00 -30.50 374.03 -8.69 -39.19 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -7.47 Total: 2.62 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -1.46 Total: -9.51 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.22 Total: -39.02 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.58 Total: -15.28 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.50 -8.69 -39.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425408502.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.058 kcal (2) G-P(sol) polarization free energy of solvation -30.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds