Wall clock time and date at job start Fri Apr 10 2020 21:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50699 * 120.00003 * 2 1 4 4 N 1.46894 * 109.47254 * 125.02832 * 3 2 1 5 5 C 1.46902 * 110.99965 * 64.63251 * 4 3 2 6 6 C 1.50708 * 109.47082 * 66.04408 * 5 4 3 7 7 H 1.07998 * 119.99719 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00240 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99898 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99967 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47412 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47040 * 120.00233 * 10 8 6 13 13 H 1.48503 * 109.46935 * 239.99833 * 10 8 6 14 14 C 1.46898 * 111.00166 * 300.68064 * 4 3 2 15 15 C 1.52997 * 109.47240 * 288.09971 * 14 4 3 16 16 C 1.52999 * 109.47287 * 176.97477 * 15 14 4 17 17 C 1.53001 * 109.47043 * 60.00218 * 16 15 14 18 18 C 1.53002 * 109.46874 * 59.99809 * 17 16 15 19 19 C 1.53001 * 109.46874 * 180.02562 * 18 17 16 20 20 F 1.39896 * 109.47194 * 60.00391 * 19 18 17 21 21 F 1.39901 * 109.47009 * 179.97438 * 19 18 17 22 22 F 1.39898 * 109.47418 * 299.99856 * 19 18 17 23 23 C 1.52999 * 109.47441 * 299.99947 * 18 17 16 24 24 C 1.53001 * 109.47043 * 60.00156 * 23 18 17 25 25 H 1.08007 * 120.00015 * 180.02562 * 1 2 3 26 26 H 1.08001 * 120.00518 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.00121 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47082 * 5.02835 * 3 2 1 29 29 H 1.08998 * 109.47473 * 245.03511 * 3 2 1 30 30 H 1.08994 * 109.47349 * 186.04504 * 5 4 3 31 31 H 1.09000 * 109.47348 * 306.05006 * 5 4 3 32 32 H 0.96999 * 120.00246 * 179.97438 * 9 8 6 33 33 H 1.09005 * 109.47319 * 168.10232 * 14 4 3 34 34 H 1.08997 * 109.46914 * 48.10062 * 14 4 3 35 35 H 1.09000 * 109.46989 * 56.97655 * 15 14 4 36 36 H 1.08998 * 109.47564 * 300.00532 * 16 15 14 37 37 H 1.09004 * 109.46961 * 180.02562 * 16 15 14 38 38 H 1.08993 * 109.47390 * 179.97438 * 17 16 15 39 39 H 1.08997 * 109.46959 * 300.00472 * 17 16 15 40 40 H 1.09004 * 109.47106 * 59.99935 * 18 17 16 41 41 H 1.08994 * 109.47136 * 300.00195 * 23 18 17 42 42 H 1.08998 * 109.47564 * 179.97438 * 23 18 17 43 43 H 1.08993 * 109.47390 * 180.02562 * 24 23 18 44 44 H 1.09006 * 109.47143 * 59.99630 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9967 1.3317 1.1341 5 6 4.0304 0.2979 0.9896 6 6 4.9002 0.6198 -0.1983 7 1 4.7049 1.5041 -0.7867 8 6 5.9459 -0.2140 -0.5332 9 7 6.1840 -1.2907 0.1837 10 14 7.0245 0.1854 -2.0051 11 1 6.5513 1.4421 -2.6390 12 1 8.4299 0.3563 -1.5570 13 1 6.9501 -0.9245 -2.9889 14 6 2.2809 1.1859 2.4085 15 6 1.5079 2.4715 2.7093 16 6 0.7025 2.2927 3.9979 17 6 1.6545 1.9873 5.1560 18 6 2.6388 3.1462 5.3263 19 6 3.5912 2.8404 6.4841 20 9 4.2981 1.6651 6.2085 21 9 4.4916 3.8999 6.6394 22 9 2.8553 2.6767 7.6625 23 6 3.4441 3.3249 4.0378 24 6 2.4922 3.6304 2.8796 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5401 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1316 0.0901 29 1 2.6208 1.4029 -0.9316 30 1 4.6427 0.2679 1.8908 31 1 3.5559 -0.6720 0.8402 32 1 6.9194 -1.8775 -0.0521 33 1 2.9972 0.9971 3.2082 34 1 1.5841 0.3505 2.3403 35 1 0.8296 2.6891 1.8843 36 1 0.0013 1.4671 3.8766 37 1 0.1515 3.2085 4.2119 38 1 1.0809 1.8604 6.0741 39 1 2.2053 1.0714 4.9417 40 1 2.0881 4.0621 5.5406 41 1 3.9948 2.4091 3.8235 42 1 4.1450 4.1509 4.1589 43 1 3.0658 3.7573 1.9616 44 1 1.9413 4.5463 3.0939 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428869753.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:36:15 Heat of formation + Delta-G solvation = -154.915690 kcal Electronic energy + Delta-G solvation = -26851.438128 eV Core-core repulsion = 22774.170160 eV Total energy + Delta-G solvation = -4077.267968 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.166 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.05173 -47.56092 -47.48244 -39.39341 -36.83470 -32.94165 -32.65292 -31.39771 -30.71114 -27.42408 -26.28799 -25.34580 -23.47293 -22.69827 -21.52931 -21.09319 -19.38636 -18.50794 -18.19465 -17.69754 -17.42232 -16.25812 -15.80819 -15.21471 -14.68667 -14.62927 -14.46896 -14.25189 -13.97531 -13.82303 -13.72860 -13.66763 -13.60069 -13.45217 -13.31261 -12.91201 -12.33992 -12.11294 -12.05640 -11.94910 -11.51375 -11.35505 -11.22589 -11.01599 -10.84681 -10.72127 -10.63502 -10.46872 -10.15801 -10.04267 -9.98519 -9.64021 -9.22118 -8.84222 -8.43721 -7.20641 -6.02592 -4.03558 2.73099 2.82005 3.30610 3.38566 3.42535 3.83066 4.03081 4.09176 4.42353 4.72913 4.74593 4.91994 5.06485 5.20784 5.26251 5.32758 5.36019 5.43710 5.51463 5.54703 5.61343 5.68286 5.86292 5.94643 5.97859 6.01851 6.08433 6.16444 6.18931 6.39960 6.41188 6.46197 6.65201 6.67388 6.69423 7.06867 7.12045 7.36733 7.38938 7.81070 8.10207 8.19917 8.55548 9.04285 9.60757 11.08161 Molecular weight = 305.17amu Principal moments of inertia in cm(-1) A = 0.013658 B = 0.004620 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.554075 B = 6059.243716 C = 7339.292813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.157 4.157 3 C 0.085 3.915 4 N -0.525 5.525 5 C 0.190 3.810 6 C -0.504 4.504 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.894 3.106 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.286 1.286 14 C 0.053 3.947 15 C -0.084 4.084 16 C -0.107 4.107 17 C -0.120 4.120 18 C -0.128 4.128 19 C 0.450 3.550 20 F -0.179 7.179 21 F -0.186 7.186 22 F -0.190 7.190 23 C -0.119 4.119 24 C -0.097 4.097 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.110 0.890 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.028 0.972 31 H -0.005 1.005 32 H 0.260 0.740 33 H 0.070 0.930 34 H 0.028 0.972 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.191 8.607 9.828 17.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.176 4.176 3 C -0.044 4.044 4 N -0.247 5.247 5 C 0.065 3.935 6 C -0.543 4.543 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.212 1.212 14 C -0.076 4.076 15 C -0.103 4.103 16 C -0.145 4.145 17 C -0.158 4.158 18 C -0.147 4.147 19 C 0.396 3.604 20 F -0.160 7.160 21 F -0.168 7.168 22 F -0.171 7.171 23 C -0.157 4.157 24 C -0.135 4.135 25 H 0.104 0.896 26 H 0.107 0.893 27 H 0.128 0.872 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.046 0.954 31 H 0.013 0.987 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.126 0.874 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.770 8.917 9.879 17.120 hybrid contribution 0.469 -0.919 -0.463 1.131 sum -10.301 7.999 9.416 16.085 Atomic orbital electron populations 1.23637 0.95944 1.00665 1.05187 1.23909 0.96183 1.01610 0.95932 1.21324 0.93947 0.92195 0.96888 1.62365 1.11988 1.50956 0.99401 1.19758 0.88433 0.87703 0.97592 1.21180 1.12599 1.08631 1.11852 0.91882 1.24972 0.97575 0.95088 0.96936 1.69966 1.30615 1.13766 1.39452 0.86496 0.80424 0.78241 0.82584 1.19683 1.21085 1.21213 1.22225 0.96656 0.94890 0.93819 1.21152 0.96642 0.96235 0.96295 1.21494 0.97210 1.01613 0.94194 1.21640 0.97110 0.97293 0.99737 1.22535 0.96225 1.02677 0.93286 1.20800 0.81074 0.74343 0.84184 1.93201 1.80280 1.48986 1.93552 1.93162 1.70182 1.57283 1.96166 1.93147 1.76995 1.95476 1.51515 1.21654 0.98048 1.04010 0.91970 1.21350 0.96854 0.96549 0.98701 0.89631 0.89309 0.87243 0.92290 0.89203 0.95431 0.98734 0.93037 0.91178 0.95403 0.91141 0.91486 0.91906 0.91215 0.90138 0.87380 0.89480 0.91164 0.89311 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.13 14.32 29.02 0.42 -2.71 16 2 C -0.16 -2.71 7.42 -36.03 -0.27 -2.98 16 3 C 0.08 1.52 5.47 -4.98 -0.03 1.49 16 4 N -0.52 -10.25 4.02 -237.52 -0.96 -11.21 16 5 C 0.19 4.69 4.56 -4.97 -0.02 4.66 16 6 C -0.50 -13.58 8.45 -34.44 -0.29 -13.87 16 7 H 0.06 1.68 7.13 -52.49 -0.37 1.31 16 8 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -26.31 13.29 55.43 0.74 -25.57 16 10 Si 0.89 21.36 29.54 -169.99 -5.02 16.33 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.05 0.86 3.53 -3.83 -0.01 0.84 16 15 C -0.08 -1.08 2.66 -90.62 -0.24 -1.32 16 16 C -0.11 -1.12 5.45 -26.73 -0.15 -1.27 16 17 C -0.12 -1.31 4.69 -26.73 -0.13 -1.43 16 18 C -0.13 -1.41 2.17 -90.62 -0.20 -1.60 16 19 C 0.45 5.63 2.69 37.16 0.10 5.73 16 20 F -0.18 -2.61 16.28 2.25 0.04 -2.57 16 21 F -0.19 -2.44 16.80 2.25 0.04 -2.40 16 22 F -0.19 -2.33 16.80 2.25 0.04 -2.29 16 23 C -0.12 -1.53 4.68 -26.73 -0.13 -1.65 16 24 C -0.10 -1.22 5.32 -26.73 -0.14 -1.37 16 25 H 0.09 1.14 8.06 -52.48 -0.42 0.72 16 26 H 0.09 1.15 7.84 -52.49 -0.41 0.74 16 27 H 0.11 2.16 6.79 -52.48 -0.36 1.81 16 28 H 0.06 0.92 6.32 -51.93 -0.33 0.60 16 29 H 0.09 1.80 6.74 -51.93 -0.35 1.45 16 30 H 0.03 0.74 7.86 -51.93 -0.41 0.34 16 31 H -0.01 -0.13 6.35 -51.93 -0.33 -0.46 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 33 H 0.07 1.21 4.48 -51.93 -0.23 0.98 16 34 H 0.03 0.47 6.69 -51.93 -0.35 0.12 16 35 H 0.07 0.91 6.66 -51.93 -0.35 0.56 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.67 7.80 -51.93 -0.41 0.27 16 39 H 0.08 1.00 6.16 -51.93 -0.32 0.69 16 40 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.09 1.35 6.02 -51.93 -0.31 1.04 16 42 H 0.07 0.86 7.80 -51.93 -0.41 0.46 16 43 H 0.09 1.32 7.69 -51.93 -0.40 0.92 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 346.18 15.07 5.22 5.22 Total: -1.00 -28.08 346.18 -7.67 -35.75 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.58 Total: 0.78 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -1.18 Total: -14.03 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: -0.22 Total: -36.78 kcal Atomic # 9 Polarization: -7.38 SS G_CDS: 0.11 Total: -7.27 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.08 -7.67 -35.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428869753.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.170 kcal (2) G-P(sol) polarization free energy of solvation -28.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds