Wall clock time and date at job start Fri Apr 10 2020 21:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46839 * 2 1 4 4 H 1.08994 * 109.47109 * 304.99524 * 3 2 1 5 5 C 1.50701 * 109.46813 * 185.00133 * 3 2 1 6 6 H 1.08003 * 119.99601 * 239.99895 * 5 3 2 7 7 C 1.37878 * 120.00452 * 60.00044 * 5 3 2 8 8 N 1.31515 * 119.99409 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00109 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47502 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46969 * 120.00146 * 9 7 5 12 12 H 1.48500 * 109.47103 * 239.99738 * 9 7 5 13 13 N 1.46494 * 109.47026 * 65.00441 * 3 2 1 14 14 C 1.34787 * 119.99562 * 274.99324 * 13 3 2 15 15 O 1.21582 * 119.99852 * 0.02562 * 14 13 3 16 16 C 1.47601 * 119.99882 * 179.97438 * 14 13 3 17 17 C 1.39757 * 120.08998 * 353.75114 * 16 14 13 18 18 C 1.37680 * 119.91207 * 179.97438 * 17 16 14 19 19 C 1.50703 * 119.95383 * 179.97438 * 18 17 16 20 20 C 1.53006 * 109.47138 * 300.00026 * 19 18 17 21 21 C 1.53001 * 109.47181 * 59.99938 * 19 18 17 22 22 C 1.39016 * 120.08932 * 359.97438 * 18 17 16 23 23 O 1.35710 * 119.90854 * 180.02562 * 22 18 17 24 24 C 1.38976 * 120.17308 * 0.04679 * 22 18 17 25 25 C 1.37715 * 120.09212 * 359.67196 * 24 22 18 26 26 C 1.50697 * 120.04704 * 180.32417 * 25 24 22 27 27 H 1.09001 * 109.46692 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47089 * 60.00215 * 1 2 3 29 29 H 1.08999 * 109.47079 * 299.99710 * 1 2 3 30 30 H 1.09004 * 109.46930 * 120.00290 * 2 1 3 31 31 H 1.08999 * 109.47079 * 240.00290 * 2 1 3 32 32 H 0.97002 * 119.99676 * 179.97438 * 8 7 5 33 33 H 0.96996 * 120.00685 * 94.99959 * 13 3 2 34 34 H 1.08004 * 120.03946 * 359.97420 * 17 16 14 35 35 H 1.08998 * 109.46815 * 180.02562 * 19 18 17 36 36 H 1.08998 * 109.46999 * 60.00441 * 20 19 18 37 37 H 1.09003 * 109.46773 * 180.02562 * 20 19 18 38 38 H 1.08999 * 109.47142 * 300.00410 * 20 19 18 39 39 H 1.09001 * 109.46855 * 179.97438 * 21 19 18 40 40 H 1.09003 * 109.47197 * 299.99697 * 21 19 18 41 41 H 1.09001 * 109.46875 * 59.99976 * 21 19 18 42 42 H 0.96703 * 113.99358 * 90.00358 * 23 22 18 43 43 H 1.08002 * 119.94805 * 179.97438 * 24 22 18 44 44 H 1.09006 * 109.47031 * 263.64734 * 26 25 24 45 45 H 1.08999 * 109.47229 * 23.64772 * 26 25 24 46 46 H 1.09007 * 109.47277 * 143.65027 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1471 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1728 9 14 6.0049 0.8814 -1.3818 10 1 6.5987 1.5463 -0.1942 11 1 6.4970 -0.5174 -1.4630 12 1 6.3989 1.6168 -2.6102 13 7 1.6525 2.0974 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3415 2.6318 0.4320 16 6 0.0443 3.3237 2.6284 17 6 0.8800 3.2490 3.7461 18 6 0.5121 3.8659 4.9207 19 6 1.4122 3.7854 6.1268 20 6 1.6048 2.3201 6.5226 21 6 2.7701 4.4060 5.7921 22 6 -0.6884 4.5628 4.9958 23 8 -1.0470 5.1699 6.1553 24 6 -1.5223 4.6390 3.8866 25 6 -1.1588 4.0297 2.7063 26 6 -2.0604 4.1191 1.5021 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.8293 -0.0611 -2.9498 33 1 2.2719 2.1231 1.9978 34 1 1.8130 2.7081 3.6884 35 1 0.9584 4.3287 6.9556 36 1 2.0585 1.7765 5.6939 37 1 2.2555 2.2620 7.3952 38 1 0.6375 1.8779 6.7610 39 1 3.4209 4.3482 6.6646 40 1 3.2237 3.8623 4.9634 41 1 2.6329 5.4499 5.5101 42 1 -0.7391 6.0833 6.2326 43 1 -2.4543 5.1811 3.9491 44 1 -2.6811 3.2248 1.4456 45 1 -2.6979 4.9989 1.5901 46 1 -1.4544 4.1984 0.5995 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436643033.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:36:19 Heat of formation + Delta-G solvation = -77.284789 kcal Electronic energy + Delta-G solvation = -25863.593604 eV Core-core repulsion = 22331.548704 eV Total energy + Delta-G solvation = -3532.044900 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.46802 -38.87359 -36.70735 -35.85989 -34.88199 -32.64902 -31.45161 -30.86639 -29.72394 -27.22626 -27.15269 -26.44362 -23.77677 -23.02796 -22.23023 -20.84226 -19.65807 -19.37464 -18.08446 -17.48107 -16.41419 -15.78872 -15.40839 -15.22758 -14.69395 -14.63129 -14.23093 -13.96659 -13.79308 -13.45862 -13.28841 -13.07203 -12.72078 -12.38493 -12.35701 -12.33187 -11.99482 -11.76270 -11.58773 -11.50791 -11.41008 -11.25715 -11.06783 -10.95294 -10.84200 -10.82530 -10.34770 -10.29086 -10.18003 -9.61579 -9.05799 -8.87674 -8.73843 -8.51240 -8.41208 -7.78398 -6.13695 -4.22972 0.92278 1.33417 3.17020 3.22465 3.30601 3.32877 3.99096 4.07536 4.15945 4.36782 4.52758 4.69260 4.96790 5.09246 5.13377 5.17928 5.26070 5.32375 5.51854 5.54039 5.62314 5.73474 5.75908 5.82730 5.93106 5.98021 6.06742 6.10940 6.14438 6.26277 6.37883 6.40706 6.47548 6.48586 6.65542 6.71207 6.82335 7.05637 7.20373 7.36670 7.45099 7.51035 7.61572 7.72869 7.89495 8.17323 8.65109 8.76559 9.11133 9.44473 10.91642 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014816 B = 0.004335 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.340574 B = 6457.695532 C = 7670.313598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.702 5.702 14 C 0.542 3.458 15 O -0.538 6.538 16 C -0.133 4.133 17 C -0.064 4.064 18 C -0.118 4.118 19 C -0.052 4.052 20 C -0.144 4.144 21 C -0.147 4.147 22 C 0.123 3.877 23 O -0.496 6.496 24 C -0.157 4.157 25 C -0.015 4.015 26 C -0.119 4.119 27 H 0.022 0.978 28 H 0.050 0.950 29 H 0.039 0.961 30 H 0.030 0.970 31 H 0.099 0.901 32 H 0.264 0.736 33 H 0.386 0.614 34 H 0.131 0.869 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.388 0.612 43 H 0.130 0.870 44 H 0.075 0.925 45 H 0.051 0.949 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.264 8.311 15.581 18.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.349 5.349 14 C 0.329 3.671 15 O -0.419 6.419 16 C -0.136 4.136 17 C -0.083 4.083 18 C -0.119 4.119 19 C -0.071 4.071 20 C -0.202 4.202 21 C -0.204 4.204 22 C 0.078 3.922 23 O -0.306 6.306 24 C -0.175 4.175 25 C -0.017 4.017 26 C -0.175 4.175 27 H 0.041 0.959 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.219 0.781 34 H 0.148 0.852 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.244 0.756 43 H 0.148 0.852 44 H 0.093 0.907 45 H 0.070 0.930 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.027 7.622 14.815 17.718 hybrid contribution 1.500 0.385 0.265 1.571 sum -4.527 8.008 15.081 17.665 Atomic orbital electron populations 1.21843 0.98308 0.98048 1.01276 1.21935 0.92666 0.99739 1.02265 1.18812 0.94238 0.89199 0.80866 0.93135 1.21258 0.90697 1.38962 1.06292 0.92112 1.24873 0.98554 0.94790 0.95387 1.69905 1.35009 1.37626 1.09332 0.86418 0.84937 0.77780 0.78119 1.19764 1.20875 1.20878 1.46475 1.14406 1.55499 1.18540 1.18042 0.82948 0.79412 0.86737 1.90692 1.51231 1.59633 1.40337 1.20205 0.96107 1.02154 0.95124 1.21080 0.98791 0.97149 0.91311 1.20006 0.95031 1.00957 0.95864 1.19998 0.94527 0.97571 0.94987 1.21858 1.01804 0.95042 1.01469 1.21899 0.95861 1.00769 1.01854 1.18411 0.92323 0.96282 0.85138 1.84745 1.78805 1.30919 1.36141 1.21209 1.00897 1.03676 0.91749 1.19902 0.93544 0.93080 0.95136 1.21082 0.98447 1.01160 0.96810 0.95914 0.93098 0.94216 0.95091 0.88259 0.92619 0.78079 0.85173 0.89927 0.92201 0.92396 0.92564 0.92359 0.92072 0.92728 0.75630 0.85217 0.90680 0.93022 0.88031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.21 16 3 C 0.27 6.69 2.24 -69.08 -0.15 6.54 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -13.86 8.73 -34.44 -0.30 -14.16 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.37 11.29 55.43 0.63 -23.75 16 9 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.70 -14.46 4.97 -55.96 -0.28 -14.74 16 14 C 0.54 10.78 6.26 -12.44 -0.08 10.70 16 15 O -0.54 -11.96 10.47 5.29 0.06 -11.91 16 16 C -0.13 -2.17 5.88 -104.96 -0.62 -2.79 16 17 C -0.06 -0.90 8.17 -39.22 -0.32 -1.22 16 18 C -0.12 -1.45 4.79 -104.54 -0.50 -1.95 16 19 C -0.05 -0.53 3.05 -91.77 -0.28 -0.81 16 20 C -0.14 -1.44 9.00 37.16 0.33 -1.10 16 21 C -0.15 -1.35 9.00 37.16 0.33 -1.02 16 22 C 0.12 1.49 6.68 -39.02 -0.26 1.23 16 23 O -0.50 -4.92 12.24 -18.84 -0.23 -5.15 16 24 C -0.16 -1.99 9.60 -39.50 -0.38 -2.37 16 25 C -0.02 -0.23 5.91 -104.26 -0.62 -0.85 16 26 C -0.12 -1.74 8.72 36.00 0.31 -1.43 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 1.19 7.84 -51.93 -0.41 0.79 16 29 H 0.04 0.86 5.64 -51.93 -0.29 0.57 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 32 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.39 7.02 6.60 -40.82 -0.27 6.75 16 34 H 0.13 1.70 5.47 -52.48 -0.29 1.41 16 35 H 0.08 0.78 6.98 -51.93 -0.36 0.42 16 36 H 0.06 0.62 7.38 -51.93 -0.38 0.24 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.61 7.38 -51.93 -0.38 0.23 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.39 2.04 9.06 45.56 0.41 2.45 16 43 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 44 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.05 0.61 8.04 -51.93 -0.42 0.19 16 46 H 0.10 1.75 5.86 -51.92 -0.30 1.44 16 LS Contribution 362.02 15.07 5.46 5.46 Total: -1.00 -29.82 362.02 -8.16 -37.99 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -6.32 Total: 10.26 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -2.45 Total: -13.51 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.35 Total: -38.48 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.18 Total: -17.05 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.82 -8.16 -37.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436643033.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.299 kcal (2) G-P(sol) polarization free energy of solvation -29.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds