Wall clock time and date at job start Fri Apr 10 2020 21:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46891 * 2 1 4 4 H 1.09003 * 109.47257 * 55.00688 * 3 2 1 5 5 C 1.50706 * 109.47122 * 175.00431 * 3 2 1 6 6 H 1.07993 * 120.00184 * 120.00267 * 5 3 2 7 7 C 1.37882 * 119.99489 * 300.00334 * 5 3 2 8 8 N 1.31506 * 120.00104 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99720 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47264 * 59.99643 * 9 7 5 11 11 H 1.48498 * 109.47273 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47108 * 300.00020 * 9 7 5 13 13 N 1.46503 * 109.47676 * 295.00133 * 3 2 1 14 14 C 1.34775 * 119.99938 * 84.99556 * 13 3 2 15 15 O 1.21582 * 119.99731 * 0.02562 * 14 13 3 16 16 C 1.47600 * 120.00030 * 180.02562 * 14 13 3 17 17 C 1.39753 * 120.08950 * 353.73735 * 16 14 13 18 18 C 1.37682 * 119.91096 * 179.97438 * 17 16 14 19 19 C 1.50695 * 119.95334 * 180.02562 * 18 17 16 20 20 C 1.53006 * 109.47184 * 299.99810 * 19 18 17 21 21 C 1.52999 * 109.47306 * 59.99740 * 19 18 17 22 22 C 1.39012 * 120.09004 * 0.02562 * 18 17 16 23 23 O 1.35706 * 119.91261 * 179.97438 * 22 18 17 24 24 C 1.38976 * 120.17600 * 0.02562 * 22 18 17 25 25 C 1.37722 * 120.09164 * 0.02562 * 24 22 18 26 26 C 1.50697 * 120.04666 * 180.02562 * 25 24 22 27 27 H 1.08998 * 109.47427 * 299.99345 * 1 2 3 28 28 H 1.09002 * 109.47664 * 59.99934 * 1 2 3 29 29 H 1.09009 * 109.46919 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47081 * 240.00405 * 2 1 3 31 31 H 1.09000 * 109.47458 * 120.00573 * 2 1 3 32 32 H 0.97010 * 120.00098 * 180.02562 * 8 7 5 33 33 H 0.96998 * 119.99764 * 265.00910 * 13 3 2 34 34 H 1.07996 * 120.03947 * 359.70123 * 17 16 14 35 35 H 1.08997 * 109.47430 * 180.02562 * 19 18 17 36 36 H 1.09002 * 109.46996 * 60.00498 * 20 19 18 37 37 H 1.09004 * 109.46902 * 180.02562 * 20 19 18 38 38 H 1.08995 * 109.47120 * 299.99847 * 20 19 18 39 39 H 1.08993 * 109.47369 * 300.00047 * 21 19 18 40 40 H 1.09009 * 109.46926 * 59.99864 * 21 19 18 41 41 H 1.09004 * 109.47267 * 179.97438 * 21 19 18 42 42 H 0.96696 * 114.00364 * 269.99932 * 23 22 18 43 43 H 1.08003 * 119.95509 * 179.97438 * 24 22 18 44 44 H 1.08997 * 109.46714 * 263.36480 * 26 25 24 45 45 H 1.08995 * 109.47542 * 23.36202 * 26 25 24 46 46 H 1.09003 * 109.46858 * 143.36756 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1237 6 1 4.1471 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1731 9 14 6.0049 0.8812 1.3816 10 1 6.4994 2.2815 1.3820 11 1 6.3978 0.2177 2.6507 12 1 6.5975 0.1474 0.2346 13 7 1.6523 2.0976 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3413 2.6325 -0.4317 16 6 0.0443 3.3239 -2.6282 17 6 0.9777 3.4775 -3.6570 18 6 0.6092 4.0928 -4.8322 19 6 1.6147 4.2583 -5.9423 20 6 2.7947 5.0937 -5.4413 21 6 2.1158 2.8825 -6.3860 22 6 -0.6893 4.5615 -4.9961 23 8 -1.0485 5.1679 -6.1558 24 6 -1.6201 4.4117 -3.9751 25 6 -1.2591 3.7983 -2.7961 26 6 -2.2695 3.6359 -1.6898 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.8293 -0.0606 2.9501 33 1 2.2718 2.1232 -1.9977 34 1 1.9879 3.1179 -3.5285 35 1 1.1447 4.7637 -6.7860 36 1 3.2650 4.5887 -4.5975 37 1 3.5218 5.2138 -6.2445 38 1 2.4377 6.0738 -5.1253 39 1 2.5860 2.3776 -5.5422 40 1 1.2751 2.2874 -6.7429 41 1 2.8428 3.0023 -7.1893 42 1 -0.9127 6.1252 -6.1576 43 1 -2.6278 4.7775 -4.1061 44 1 -2.1543 4.4468 -0.9707 45 1 -3.2751 3.6625 -2.1094 46 1 -2.1097 2.6809 -1.1892 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436643034.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:36:24 Heat of formation + Delta-G solvation = -77.198458 kcal Electronic energy + Delta-G solvation = -25867.661344 eV Core-core repulsion = 22335.620188 eV Total energy + Delta-G solvation = -3532.041156 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.46874 -38.87587 -36.70619 -35.85499 -34.87974 -32.65101 -31.46846 -30.84884 -29.72907 -27.22394 -27.13527 -26.45689 -23.77653 -23.03202 -22.21903 -20.84681 -19.66140 -19.37280 -18.08480 -17.47830 -16.43256 -15.77735 -15.40959 -15.18763 -14.71398 -14.62141 -14.23947 -13.98061 -13.80389 -13.45857 -13.21951 -13.06074 -12.72032 -12.50180 -12.38977 -12.32184 -11.95639 -11.71787 -11.59211 -11.47975 -11.41050 -11.24270 -11.06238 -10.99451 -10.84436 -10.81156 -10.34708 -10.32632 -10.15905 -9.62284 -9.06698 -8.85474 -8.76550 -8.49913 -8.39333 -7.79893 -6.13123 -4.22624 0.92406 1.33472 3.16683 3.24642 3.30264 3.31137 4.01120 4.06547 4.15422 4.37215 4.52824 4.69564 4.96998 5.09465 5.13490 5.18301 5.26117 5.32615 5.51574 5.54260 5.62225 5.73513 5.76301 5.82898 5.93842 5.98035 6.06197 6.10985 6.14782 6.26473 6.37798 6.40120 6.47011 6.48724 6.64773 6.71434 6.82213 7.05486 7.19920 7.36570 7.44896 7.51129 7.61336 7.72929 7.89634 8.17455 8.65197 8.76440 9.11188 9.44664 10.92111 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014733 B = 0.004395 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.997844 B = 6369.945939 C = 7741.709060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.702 5.702 14 C 0.542 3.458 15 O -0.539 6.539 16 C -0.133 4.133 17 C -0.064 4.064 18 C -0.118 4.118 19 C -0.052 4.052 20 C -0.147 4.147 21 C -0.145 4.145 22 C 0.123 3.877 23 O -0.496 6.496 24 C -0.157 4.157 25 C -0.015 4.015 26 C -0.120 4.120 27 H 0.050 0.950 28 H 0.038 0.962 29 H 0.022 0.978 30 H 0.030 0.970 31 H 0.099 0.901 32 H 0.265 0.735 33 H 0.386 0.614 34 H 0.131 0.869 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.388 0.612 43 H 0.130 0.870 44 H 0.074 0.926 45 H 0.051 0.949 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.495 8.547 -15.339 18.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.349 5.349 14 C 0.329 3.671 15 O -0.419 6.419 16 C -0.136 4.136 17 C -0.083 4.083 18 C -0.119 4.119 19 C -0.071 4.071 20 C -0.204 4.204 21 C -0.202 4.202 22 C 0.078 3.922 23 O -0.306 6.306 24 C -0.175 4.175 25 C -0.017 4.017 26 C -0.176 4.176 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.219 0.781 34 H 0.148 0.852 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.244 0.756 43 H 0.148 0.852 44 H 0.093 0.907 45 H 0.070 0.930 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.140 7.825 -14.616 17.679 hybrid contribution 1.440 0.487 -0.221 1.536 sum -4.699 8.311 -14.838 17.644 Atomic orbital electron populations 1.21848 0.98350 0.98069 1.01226 1.21934 0.92651 0.99761 1.02277 1.18805 0.94201 0.89186 0.80855 0.93134 1.21180 0.90687 1.39173 1.06325 0.92223 1.24866 0.98536 0.94770 0.95365 1.69880 1.35206 1.37490 1.09299 0.86532 0.84933 0.78308 0.77471 1.20201 1.21118 1.20165 1.46475 1.14328 1.55571 1.18534 1.18038 0.82957 0.79339 0.86807 1.90690 1.50636 1.60593 1.40002 1.20205 0.94493 1.03070 0.95838 1.21082 0.99209 0.96411 0.91624 1.20005 0.93840 1.01979 0.96035 1.19996 0.94110 0.97262 0.95713 1.21900 0.97308 0.99717 1.01463 1.21858 1.00992 0.95913 1.01415 1.18411 0.91342 0.97065 0.85333 1.84743 1.87081 1.25222 1.33553 1.21216 1.00158 1.03476 0.92686 1.19906 0.93764 0.93215 0.94776 1.21091 0.94768 1.05734 0.95962 0.93075 0.94265 0.95882 0.95077 0.88256 0.92498 0.78080 0.85151 0.89931 0.92076 0.92357 0.92755 0.92177 0.92544 0.92399 0.75642 0.85219 0.90697 0.93016 0.87968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.71 2.24 -69.08 -0.15 6.56 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.91 8.73 -34.44 -0.30 -14.21 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.39 11.29 55.43 0.63 -23.76 16 9 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 13 N -0.70 -14.48 4.97 -55.95 -0.28 -14.76 16 14 C 0.54 10.79 6.26 -12.44 -0.08 10.71 16 15 O -0.54 -11.97 10.46 5.29 0.06 -11.91 16 16 C -0.13 -2.18 5.88 -104.96 -0.62 -2.79 16 17 C -0.06 -0.90 8.17 -39.22 -0.32 -1.22 16 18 C -0.12 -1.45 4.79 -104.54 -0.50 -1.95 16 19 C -0.05 -0.53 3.05 -91.77 -0.28 -0.81 16 20 C -0.15 -1.36 9.00 37.16 0.33 -1.03 16 21 C -0.14 -1.44 9.00 37.16 0.33 -1.11 16 22 C 0.12 1.49 6.68 -39.02 -0.26 1.23 16 23 O -0.50 -4.92 12.24 -18.82 -0.23 -5.15 16 24 C -0.16 -1.99 9.60 -39.50 -0.38 -2.37 16 25 C -0.02 -0.23 5.91 -104.26 -0.62 -0.85 16 26 C -0.12 -1.75 8.73 36.00 0.31 -1.44 16 27 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 28 H 0.04 0.84 5.65 -51.93 -0.29 0.55 16 29 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.10 2.64 5.95 -51.93 -0.31 2.34 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.39 7.04 6.60 -40.82 -0.27 6.77 16 34 H 0.13 1.71 5.47 -52.49 -0.29 1.42 16 35 H 0.08 0.78 6.98 -51.93 -0.36 0.42 16 36 H 0.06 0.61 7.38 -51.93 -0.38 0.23 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.62 7.39 -51.93 -0.38 0.24 16 40 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.39 2.05 9.06 45.56 0.41 2.46 16 43 H 0.13 1.39 8.05 -52.48 -0.42 0.97 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.05 0.62 8.04 -51.93 -0.42 0.20 16 46 H 0.10 1.76 5.84 -51.93 -0.30 1.46 16 LS Contribution 362.01 15.07 5.46 5.46 Total: -1.00 -29.78 362.01 -8.16 -37.94 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -6.32 Total: 10.35 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -2.45 Total: -13.52 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.35 Total: -38.52 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.18 Total: -17.06 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.78 -8.16 -37.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436643034.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.263 kcal (2) G-P(sol) polarization free energy of solvation -29.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds