Wall clock time and date at job start Fri Apr 10 2020 21:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52993 * 109.47262 * 2 1 4 4 N 1.46498 * 109.47431 * 180.02562 * 3 2 1 5 5 C 1.36940 * 119.99826 * 275.66017 * 4 3 2 6 6 H 1.08003 * 120.00258 * 34.00035 * 5 4 3 7 7 C 1.38810 * 120.00143 * 213.99561 * 5 4 3 8 8 N 1.31626 * 119.99673 * 22.92547 * 7 5 4 9 9 Si 1.86791 * 120.00488 * 202.92570 * 7 5 4 10 10 H 1.48508 * 109.47212 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47513 * 120.00050 * 9 7 5 12 12 H 1.48503 * 109.47450 * 240.00190 * 9 7 5 13 13 C 1.46499 * 120.00233 * 95.65346 * 4 3 2 14 14 C 1.50696 * 109.47492 * 270.00671 * 13 4 3 15 15 C 1.38247 * 119.96092 * 269.97900 * 14 13 4 16 16 C 1.38308 * 120.39815 * 179.80923 * 15 14 13 17 17 C 1.38376 * 119.92216 * 0.02867 * 16 15 14 18 18 C 1.39703 * 119.46907 * 0.33423 * 17 16 15 19 19 C 1.37923 * 120.41650 * 359.47586 * 18 17 16 20 20 O 1.35818 * 117.34236 * 179.23539 * 18 17 16 21 21 C 1.40157 * 120.20383 * 83.24550 * 20 18 17 22 22 C 1.51554 * 116.62280 * 281.13037 * 21 20 18 23 23 C 1.53627 * 110.57185 * 71.72964 * 22 21 20 24 24 C 1.54635 * 108.16397 * 255.69618 * 23 22 21 25 25 O 1.35595 * 121.23061 * 181.15758 * 17 16 15 26 26 H 1.08999 * 109.46976 * 59.99447 * 1 2 3 27 27 H 1.08995 * 109.46988 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46733 * 299.99729 * 1 2 3 29 29 H 1.09001 * 109.46733 * 240.00271 * 2 1 3 30 30 H 1.08999 * 109.46976 * 120.00553 * 2 1 3 31 31 H 1.09001 * 109.47025 * 60.00450 * 3 2 1 32 32 H 1.08999 * 109.47577 * 300.00186 * 3 2 1 33 33 H 0.97001 * 119.99758 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.46841 * 150.00252 * 13 4 3 35 35 H 1.08997 * 109.46754 * 30.00683 * 13 4 3 36 36 H 1.07999 * 119.80488 * 359.82414 * 15 14 13 37 37 H 1.08003 * 120.03993 * 180.02562 * 16 15 14 38 38 H 1.08005 * 120.14264 * 180.37225 * 19 18 17 39 39 H 1.08996 * 108.02011 * 159.32903 * 21 20 18 40 40 H 1.09002 * 108.01707 * 42.93150 * 21 20 18 41 41 H 1.08991 * 109.25447 * 192.00927 * 22 21 20 42 42 H 1.08992 * 109.25691 * 311.44956 * 22 21 20 43 43 H 1.08997 * 109.72600 * 15.36289 * 23 22 21 44 44 H 1.08997 * 109.71897 * 136.03043 * 23 22 21 45 45 H 1.09003 * 109.64105 * 297.72974 * 24 23 22 46 46 H 1.09008 * 109.63532 * 177.12251 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1903 1.3253 1.1793 6 1 3.7891 0.7204 1.9790 7 6 5.4005 1.9841 1.3474 8 7 5.6812 3.0418 0.6160 9 14 6.6307 1.3696 2.6116 10 1 6.0793 0.1738 3.2983 11 1 7.9008 1.0089 1.9318 12 1 6.8898 2.4377 3.6102 13 6 4.2371 1.5676 -1.2634 14 6 4.4880 0.1968 -1.8368 15 6 5.6406 -0.4903 -1.5042 16 6 5.8781 -1.7506 -2.0221 17 6 4.9585 -2.3294 -2.8788 18 6 3.7988 -1.6280 -3.2179 19 6 3.5641 -0.3730 -2.6962 20 8 2.9336 -2.2301 -4.0744 21 6 1.9962 -3.1553 -3.5951 22 6 2.5064 -4.5537 -3.3108 23 6 3.3944 -4.5599 -2.0572 24 6 4.8687 -4.6663 -2.5114 25 8 5.1533 -3.5728 -3.3835 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6768 1.9563 -0.8899 33 1 6.5270 3.5019 0.7333 34 1 5.1896 2.0661 -1.0833 35 1 3.6478 2.1540 -1.9683 36 1 6.3598 -0.0404 -0.8359 37 1 6.7804 -2.2824 -1.7581 38 1 2.6632 0.1628 -2.9566 39 1 1.1930 -3.2319 -4.3279 40 1 1.5708 -2.7577 -2.6737 41 1 1.6587 -5.2206 -3.1541 42 1 3.0866 -4.9051 -4.1640 43 1 3.2476 -3.6361 -1.4978 44 1 3.1400 -5.4146 -1.4305 45 1 5.0221 -5.6066 -3.0409 46 1 5.5241 -4.6212 -1.6415 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449020726.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:36:33 Heat of formation + Delta-G solvation = -36.953987 kcal Electronic energy + Delta-G solvation = -26770.439902 eV Core-core repulsion = 23240.143878 eV Total energy + Delta-G solvation = -3530.296025 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.48870 -37.70921 -37.61356 -35.81811 -33.83154 -32.98946 -31.12684 -30.17949 -29.30091 -28.39485 -25.77151 -25.52484 -23.92926 -22.46889 -21.70111 -21.43093 -20.42550 -19.97030 -17.71273 -16.96092 -16.58771 -16.45821 -15.83336 -15.19092 -14.86583 -14.51700 -14.42322 -14.02556 -13.83696 -13.76411 -13.64003 -13.20346 -12.90511 -12.75915 -12.13784 -11.97765 -11.65498 -11.60943 -11.58358 -11.28249 -11.15980 -11.07685 -10.86500 -10.77250 -10.68234 -10.47917 -10.42712 -10.19737 -10.01052 -9.95170 -9.72919 -9.22950 -8.56297 -8.28789 -7.78013 -6.69739 -5.87224 -3.40155 1.62336 1.76343 3.29165 3.39674 3.42025 3.73134 3.81406 4.38603 4.45430 4.69840 4.72936 4.95760 5.21850 5.22498 5.31100 5.35665 5.39999 5.47442 5.56893 5.63627 5.69340 5.70461 5.78484 5.80652 5.87593 5.93662 5.99237 6.06164 6.15035 6.18252 6.21363 6.25678 6.40923 6.54920 6.58028 6.64643 6.83914 6.89037 6.92164 7.11292 7.24000 7.32195 7.57728 7.63398 7.75755 8.16078 8.42091 9.09577 9.73326 10.29446 11.12655 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014243 B = 0.005548 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.373187 B = 5045.631181 C = 5950.437291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.148 3.852 4 N -0.575 5.575 5 C -0.250 4.250 6 H 0.061 0.939 7 C 0.010 3.990 8 N -0.884 5.884 9 Si 0.890 3.110 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.289 1.289 13 C 0.168 3.832 14 C -0.055 4.055 15 C -0.091 4.091 16 C -0.135 4.135 17 C 0.048 3.952 18 C 0.077 3.923 19 C -0.119 4.119 20 O -0.326 6.326 21 C 0.075 3.925 22 C -0.150 4.150 23 C -0.163 4.163 24 C 0.062 3.938 25 O -0.322 6.322 26 H 0.047 0.953 27 H 0.041 0.959 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.035 0.965 33 H 0.256 0.744 34 H 0.112 0.888 35 H 0.036 0.964 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.088 0.912 40 H 0.042 0.958 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.544 -12.236 -6.184 14.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.022 3.978 4 N -0.293 5.293 5 C -0.380 4.380 6 H 0.079 0.921 7 C -0.190 4.190 8 N -0.526 5.526 9 Si 0.719 3.281 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.216 1.216 13 C 0.042 3.958 14 C -0.059 4.059 15 C -0.110 4.110 16 C -0.154 4.154 17 C 0.004 3.996 18 C 0.033 3.967 19 C -0.138 4.138 20 O -0.243 6.243 21 C 0.000 4.000 22 C -0.188 4.188 23 C -0.201 4.201 24 C -0.013 4.013 25 O -0.239 6.239 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.129 0.871 35 H 0.054 0.946 36 H 0.145 0.855 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.106 0.894 40 H 0.060 0.940 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.115 0.885 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.381 -12.089 -6.500 14.743 hybrid contribution 0.618 -0.674 1.169 1.485 sum -4.762 -12.764 -5.331 14.629 Atomic orbital electron populations 1.21726 0.97419 1.00264 1.01048 1.22182 0.93665 1.01134 1.01625 1.20917 0.85002 0.92951 0.98927 1.43756 0.99356 1.84199 1.02019 1.19055 1.02988 1.22998 0.92946 0.92084 1.25045 1.00609 0.95025 0.98327 1.69979 1.23661 1.16730 1.42259 0.86429 0.81676 0.78699 0.81291 1.20103 1.21243 1.21583 1.20175 1.01260 0.88479 0.85862 1.21254 0.91886 1.00460 0.92263 1.21029 0.97854 0.93530 0.98627 1.21259 0.99224 0.96934 0.97977 1.18901 0.95070 0.86296 0.99347 1.18872 0.88787 0.93439 0.95573 1.20903 1.00432 0.94741 0.97746 1.85169 1.48052 1.56180 1.34867 1.21831 0.89672 0.88550 0.99985 1.22016 1.00200 0.97935 0.98606 1.22742 0.96042 1.03168 0.98115 1.23231 0.94687 0.89300 0.94080 1.86048 1.86773 1.11499 1.39541 0.93419 0.93987 0.93213 0.92672 0.92649 0.93658 0.94640 0.93411 0.87063 0.94550 0.85528 0.86264 0.85916 0.89360 0.93977 0.90687 0.90474 0.91024 0.90687 0.88459 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.15 -2.60 6.23 -26.73 -0.17 -2.76 16 3 C 0.15 3.00 5.72 -4.05 -0.02 2.97 16 4 N -0.58 -13.46 2.44 -174.62 -0.43 -13.88 16 5 C -0.25 -6.46 9.48 -15.06 -0.14 -6.60 16 6 H 0.06 1.61 7.93 -52.48 -0.42 1.19 16 7 C 0.01 0.26 4.95 -17.43 -0.09 0.17 16 8 N -0.88 -24.04 11.31 55.49 0.63 -23.42 16 9 Si 0.89 20.66 29.61 -169.99 -5.03 15.63 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.17 3.76 5.46 -5.20 -0.03 3.73 16 14 C -0.06 -1.11 5.45 -104.54 -0.57 -1.68 16 15 C -0.09 -1.81 9.68 -39.55 -0.38 -2.19 16 16 C -0.14 -2.41 9.97 -39.50 -0.39 -2.81 16 17 C 0.05 0.85 4.74 -38.98 -0.18 0.67 16 18 C 0.08 1.38 5.36 -39.15 -0.21 1.17 16 19 C -0.12 -2.20 7.86 -39.62 -0.31 -2.51 16 20 O -0.33 -5.47 9.67 -34.87 -0.34 -5.81 16 21 C 0.07 0.98 5.93 36.43 0.22 1.19 16 22 C -0.15 -1.68 5.66 -27.14 -0.15 -1.83 16 23 C -0.16 -1.95 5.68 -25.55 -0.14 -2.10 16 24 C 0.06 0.77 6.42 38.02 0.24 1.02 16 25 O -0.32 -5.25 9.36 -36.10 -0.34 -5.58 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.05 1.00 6.13 -51.93 -0.32 0.69 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.95 8.09 -51.93 -0.42 0.53 16 32 H 0.04 0.68 7.83 -51.93 -0.41 0.27 16 33 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 34 H 0.11 2.80 5.26 -51.93 -0.27 2.53 16 35 H 0.04 0.77 7.80 -51.93 -0.40 0.37 16 36 H 0.13 2.64 8.06 -52.49 -0.42 2.21 16 37 H 0.12 1.89 8.06 -52.48 -0.42 1.47 16 38 H 0.12 2.15 8.02 -52.48 -0.42 1.73 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.04 0.56 7.81 -51.93 -0.41 0.16 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.90 7.50 -51.93 -0.39 0.51 16 43 H 0.07 1.04 6.57 -51.93 -0.34 0.70 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 LS Contribution 362.84 15.07 5.47 5.47 Total: -1.00 -28.07 362.84 -9.59 -37.66 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -7.58 Total: 3.23 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -1.97 Total: -13.30 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.20 Total: -37.30 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -0.68 Total: -11.39 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.07 -9.59 -37.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449020726.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.706 kcal (2) G-P(sol) polarization free energy of solvation -28.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds