Wall clock time and date at job start Fri Apr 10 2020 21:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52993 * 109.47262 * 2 1 4 4 N 1.46498 * 109.47431 * 180.02562 * 3 2 1 5 5 C 1.36940 * 119.99826 * 275.66017 * 4 3 2 6 6 H 1.08003 * 120.00258 * 34.00035 * 5 4 3 7 7 C 1.38810 * 120.00143 * 213.99561 * 5 4 3 8 8 N 1.31626 * 119.99673 * 22.92547 * 7 5 4 9 9 Si 1.86791 * 120.00488 * 202.92570 * 7 5 4 10 10 H 1.48508 * 109.47212 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47513 * 120.00050 * 9 7 5 12 12 H 1.48503 * 109.47450 * 240.00190 * 9 7 5 13 13 C 1.46499 * 120.00233 * 95.65346 * 4 3 2 14 14 C 1.50696 * 109.47492 * 270.00671 * 13 4 3 15 15 C 1.38247 * 119.96092 * 269.97900 * 14 13 4 16 16 C 1.38308 * 120.39815 * 179.80923 * 15 14 13 17 17 C 1.38376 * 119.92216 * 0.02867 * 16 15 14 18 18 C 1.39703 * 119.46907 * 0.33423 * 17 16 15 19 19 C 1.37923 * 120.41650 * 359.47586 * 18 17 16 20 20 O 1.35818 * 117.34236 * 179.23539 * 18 17 16 21 21 C 1.40157 * 120.20383 * 83.24550 * 20 18 17 22 22 C 1.51554 * 116.62280 * 281.13037 * 21 20 18 23 23 C 1.53627 * 110.57185 * 71.72964 * 22 21 20 24 24 C 1.54635 * 108.16397 * 255.69618 * 23 22 21 25 25 O 1.35595 * 121.23061 * 181.15758 * 17 16 15 26 26 H 1.08999 * 109.46976 * 59.99447 * 1 2 3 27 27 H 1.08995 * 109.46988 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46733 * 299.99729 * 1 2 3 29 29 H 1.09001 * 109.46733 * 240.00271 * 2 1 3 30 30 H 1.08999 * 109.46976 * 120.00553 * 2 1 3 31 31 H 1.09001 * 109.47025 * 60.00450 * 3 2 1 32 32 H 1.08999 * 109.47577 * 300.00186 * 3 2 1 33 33 H 0.97001 * 119.99758 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.46841 * 150.00252 * 13 4 3 35 35 H 1.08997 * 109.46754 * 30.00683 * 13 4 3 36 36 H 1.07999 * 119.80488 * 359.82414 * 15 14 13 37 37 H 1.08003 * 120.03993 * 180.02562 * 16 15 14 38 38 H 1.08005 * 120.14264 * 180.37225 * 19 18 17 39 39 H 1.08996 * 108.02011 * 159.32903 * 21 20 18 40 40 H 1.09002 * 108.01707 * 42.93150 * 21 20 18 41 41 H 1.08991 * 109.25447 * 192.00927 * 22 21 20 42 42 H 1.08992 * 109.25691 * 311.44956 * 22 21 20 43 43 H 1.08997 * 109.72600 * 15.36289 * 23 22 21 44 44 H 1.08997 * 109.71897 * 136.03043 * 23 22 21 45 45 H 1.09003 * 109.64105 * 297.72974 * 24 23 22 46 46 H 1.09008 * 109.63532 * 177.12251 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1903 1.3253 1.1793 6 1 3.7891 0.7204 1.9790 7 6 5.4005 1.9841 1.3474 8 7 5.6812 3.0418 0.6160 9 14 6.6307 1.3696 2.6116 10 1 6.0793 0.1738 3.2983 11 1 7.9008 1.0089 1.9318 12 1 6.8898 2.4377 3.6102 13 6 4.2371 1.5676 -1.2634 14 6 4.4880 0.1968 -1.8368 15 6 5.6406 -0.4903 -1.5042 16 6 5.8781 -1.7506 -2.0221 17 6 4.9585 -2.3294 -2.8788 18 6 3.7988 -1.6280 -3.2179 19 6 3.5641 -0.3730 -2.6962 20 8 2.9336 -2.2301 -4.0744 21 6 1.9962 -3.1553 -3.5951 22 6 2.5064 -4.5537 -3.3108 23 6 3.3944 -4.5599 -2.0572 24 6 4.8687 -4.6663 -2.5114 25 8 5.1533 -3.5728 -3.3835 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6768 1.9563 -0.8899 33 1 6.5270 3.5019 0.7333 34 1 5.1896 2.0661 -1.0833 35 1 3.6478 2.1540 -1.9683 36 1 6.3598 -0.0404 -0.8359 37 1 6.7804 -2.2824 -1.7581 38 1 2.6632 0.1628 -2.9566 39 1 1.1930 -3.2319 -4.3279 40 1 1.5708 -2.7577 -2.6737 41 1 1.6587 -5.2206 -3.1541 42 1 3.0866 -4.9051 -4.1640 43 1 3.2476 -3.6361 -1.4978 44 1 3.1400 -5.4146 -1.4305 45 1 5.0221 -5.6066 -3.0409 46 1 5.5241 -4.6212 -1.6415 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449020726.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:36:32 Heat of formation + Delta-G solvation = -49.587816 kcal Electronic energy + Delta-G solvation = -26770.987746 eV Core-core repulsion = 23240.143878 eV Total energy + Delta-G solvation = -3530.843869 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.77773 -39.17456 -38.84765 -37.39997 -34.93501 -34.61625 -32.82412 -31.65713 -30.75935 -29.47415 -27.35340 -27.23153 -25.13702 -23.96917 -23.00831 -22.73630 -21.87890 -21.39442 -19.06935 -18.54775 -18.04919 -17.73869 -17.13999 -16.69620 -16.32603 -16.00803 -15.64977 -15.58764 -15.30947 -15.10791 -14.95135 -14.76844 -14.22328 -14.02370 -13.39416 -13.35226 -13.24059 -13.03042 -12.93467 -12.79435 -12.66266 -12.47853 -12.28956 -12.16912 -12.05281 -12.04100 -11.84911 -11.74308 -11.62613 -11.35742 -11.16327 -10.51695 -10.44289 -9.72156 -9.23753 -8.60680 -7.83323 -5.40522 0.20824 0.32222 1.42064 1.47420 1.55559 2.36264 2.52087 2.62072 3.03497 3.23932 3.73462 3.79551 3.82618 3.92850 4.05046 4.18117 4.25082 4.32332 4.35435 4.41900 4.44017 4.46829 4.53441 4.56731 4.64549 4.67418 4.77853 4.81814 4.87803 4.91233 4.96844 5.01856 5.13038 5.18605 5.23666 5.26896 5.36852 5.40366 5.42948 5.57265 5.64005 5.71576 5.77370 5.89128 6.36486 6.46169 6.87540 7.15220 7.85092 8.36718 9.12998 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014243 B = 0.005548 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.373187 B = 5045.631181 C = 5950.437291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.133 4.133 3 C 0.145 3.855 4 N -0.589 5.589 5 C -0.254 4.254 6 H 0.051 0.949 7 C -0.029 4.029 8 N -0.912 5.912 9 Si 0.942 3.058 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.291 1.291 13 C 0.175 3.825 14 C -0.066 4.066 15 C -0.106 4.106 16 C -0.135 4.135 17 C 0.055 3.945 18 C 0.079 3.921 19 C -0.117 4.117 20 O -0.339 6.339 21 C 0.063 3.937 22 C -0.145 4.145 23 C -0.162 4.162 24 C 0.054 3.946 25 O -0.333 6.333 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.034 0.966 31 H 0.033 0.967 32 H 0.046 0.954 33 H 0.253 0.747 34 H 0.082 0.918 35 H 0.039 0.961 36 H 0.107 0.893 37 H 0.138 0.862 38 H 0.130 0.870 39 H 0.115 0.885 40 H 0.036 0.964 41 H 0.106 0.894 42 H 0.076 0.924 43 H 0.041 0.959 44 H 0.101 0.899 45 H 0.128 0.872 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.826 -14.992 -6.958 17.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.172 4.172 3 C 0.020 3.980 4 N -0.308 5.308 5 C -0.384 4.384 6 H 0.069 0.931 7 C -0.227 4.227 8 N -0.556 5.556 9 Si 0.771 3.229 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.219 1.219 13 C 0.049 3.951 14 C -0.069 4.069 15 C -0.125 4.125 16 C -0.153 4.153 17 C 0.011 3.989 18 C 0.035 3.965 19 C -0.136 4.136 20 O -0.256 6.256 21 C -0.011 4.011 22 C -0.182 4.182 23 C -0.200 4.200 24 C -0.020 4.020 25 O -0.250 6.250 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.058 0.942 36 H 0.126 0.874 37 H 0.156 0.844 38 H 0.148 0.852 39 H 0.133 0.867 40 H 0.055 0.945 41 H 0.124 0.876 42 H 0.094 0.906 43 H 0.060 0.940 44 H 0.119 0.881 45 H 0.146 0.854 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.685 -14.874 -7.281 17.859 hybrid contribution 0.942 0.065 1.322 1.624 sum -5.744 -14.809 -5.959 16.965 Atomic orbital electron populations 1.21658 0.94379 1.01727 1.01907 1.21979 0.96185 0.98715 1.00355 1.21033 0.83429 0.94689 0.98836 1.43918 1.00613 1.84556 1.01709 1.19131 1.03424 1.22272 0.93594 0.93125 1.25568 1.01846 0.95204 1.00054 1.70082 1.23827 1.17836 1.43877 0.85611 0.79863 0.78072 0.79390 1.19723 1.21163 1.21851 1.19946 0.99712 0.89779 0.85689 1.20933 0.92897 0.99444 0.93657 1.20917 0.97725 0.94586 0.99258 1.21358 1.00032 0.96142 0.97795 1.18954 0.94524 0.87141 0.98274 1.18891 0.89320 0.93228 0.95024 1.20852 1.00188 0.95117 0.97481 1.85133 1.48394 1.57135 1.34954 1.22177 0.89453 0.88846 1.00649 1.22018 1.01156 0.97093 0.97972 1.22750 0.95844 1.02769 0.98629 1.23562 0.95247 0.88924 0.94245 1.86010 1.86951 1.11463 1.40622 0.92159 0.92208 0.92785 0.93090 0.94709 0.94828 0.93519 0.93753 0.90009 0.94247 0.87437 0.84418 0.85194 0.86745 0.94513 0.87571 0.90578 0.93997 0.88051 0.85384 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.91 71.99 0.71 -2.98 16 2 C -0.13 -4.64 6.23 30.60 0.19 -4.45 16 3 C 0.15 5.93 5.72 86.38 0.49 6.43 16 4 N -0.59 -28.31 2.44 -706.37 -1.73 -30.04 16 5 C -0.25 -13.49 9.48 84.03 0.80 -12.69 16 6 H 0.05 2.75 7.93 -2.91 -0.02 2.72 16 7 C -0.03 -1.57 4.95 84.86 0.42 -1.15 16 8 N -0.91 -51.37 11.31 21.65 0.24 -51.13 16 9 Si 0.94 43.50 29.61 68.60 2.03 45.53 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 11 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 13 C 0.17 8.09 5.46 85.63 0.47 8.56 16 14 C -0.07 -2.73 5.45 -19.81 -0.11 -2.84 16 15 C -0.11 -4.30 9.68 22.29 0.22 -4.08 16 16 C -0.13 -4.76 9.97 22.32 0.22 -4.54 16 17 C 0.06 1.90 4.74 22.66 0.11 2.01 16 18 C 0.08 2.76 5.36 22.55 0.12 2.88 16 19 C -0.12 -4.31 7.86 22.25 0.17 -4.13 16 20 O -0.34 -10.72 9.67 -67.80 -0.66 -11.38 16 21 C 0.06 1.47 5.93 71.51 0.42 1.89 16 22 C -0.14 -2.71 5.66 30.33 0.17 -2.54 16 23 C -0.16 -3.40 5.68 31.36 0.18 -3.22 16 24 C 0.05 1.19 6.42 72.54 0.47 1.66 16 25 O -0.33 -10.14 9.36 -72.20 -0.68 -10.81 16 26 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.05 1.82 6.13 -2.39 -0.01 1.81 16 30 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.03 1.42 8.09 -2.39 -0.02 1.40 16 32 H 0.05 1.77 7.83 -2.39 -0.02 1.75 16 33 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 34 H 0.08 4.33 5.26 -2.39 -0.01 4.32 16 35 H 0.04 1.73 7.80 -2.39 -0.02 1.72 16 36 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 37 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 38 H 0.13 4.49 8.02 -2.91 -0.02 4.47 16 39 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.04 0.90 7.81 -2.39 -0.02 0.88 16 41 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.08 1.48 7.50 -2.39 -0.02 1.46 16 43 H 0.04 1.14 6.57 -2.39 -0.02 1.13 16 44 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -61.71 362.84 5.22 -56.49 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.95 Total: 20.54 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: 5.05 Total: -19.21 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -1.48 Total: -81.17 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -1.33 Total: -22.19 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -61.71 5.22 -56.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449020726.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.905 kcal (2) G-P(sol) polarization free energy of solvation -61.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds