Wall clock time and date at job start Fri Apr 10 2020 21:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46789 * 2 1 4 4 H 1.09002 * 109.46727 * 177.95964 * 3 2 1 5 5 C 1.50695 * 109.47445 * 57.96298 * 3 2 1 6 6 H 1.08002 * 120.00110 * 240.00313 * 5 3 2 7 7 C 1.37882 * 120.00132 * 59.99292 * 5 3 2 8 8 N 1.31517 * 119.99971 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99937 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.46977 * 60.00536 * 9 7 5 11 11 H 1.48503 * 109.46825 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47023 * 299.99875 * 9 7 5 13 13 N 1.46900 * 109.47516 * 297.95668 * 3 2 1 14 14 C 1.46897 * 111.00201 * 273.74973 * 13 3 2 15 15 C 1.50704 * 109.47077 * 174.87092 * 14 13 3 16 16 C 1.38246 * 119.96799 * 269.98056 * 15 14 13 17 17 C 1.38300 * 120.40079 * 179.82876 * 16 15 14 18 18 C 1.38380 * 119.92075 * 359.94886 * 17 16 15 19 19 C 1.39693 * 119.47037 * 0.43720 * 18 17 16 20 20 C 1.37937 * 120.41797 * 359.41174 * 19 18 17 21 21 O 1.35818 * 117.34486 * 179.17227 * 19 18 17 22 22 C 1.40155 * 120.20355 * 83.24861 * 21 19 18 23 23 C 1.51558 * 116.62203 * 281.13133 * 22 21 19 24 24 C 1.53624 * 110.57411 * 71.72572 * 23 22 21 25 25 C 1.54638 * 108.16752 * 255.70015 * 24 23 22 26 26 O 1.35597 * 121.22906 * 181.19742 * 18 17 16 27 27 H 1.09003 * 109.47275 * 174.44467 * 1 2 3 28 28 H 1.09002 * 109.46894 * 294.44460 * 1 2 3 29 29 H 1.09002 * 109.47508 * 54.44529 * 1 2 3 30 30 H 1.09006 * 109.47073 * 240.00381 * 2 1 3 31 31 H 1.08995 * 109.47311 * 120.00190 * 2 1 3 32 32 H 0.96994 * 120.00162 * 180.02562 * 8 7 5 33 33 H 1.00899 * 110.99662 * 149.79273 * 13 3 2 34 34 H 1.09009 * 109.46976 * 54.88076 * 14 13 3 35 35 H 1.08996 * 109.47353 * 294.87873 * 14 13 3 36 36 H 1.07999 * 119.79819 * 359.80974 * 16 15 14 37 37 H 1.08003 * 120.03896 * 179.97438 * 17 16 15 38 38 H 1.07994 * 120.14027 * 180.32473 * 20 19 18 39 39 H 1.08997 * 108.02317 * 159.33400 * 22 21 19 40 40 H 1.08995 * 108.02338 * 42.93157 * 22 21 19 41 41 H 1.08994 * 109.25911 * 192.01223 * 23 22 21 42 42 H 1.09001 * 109.25426 * 311.44837 * 23 22 21 43 43 H 1.09000 * 109.72430 * 15.37219 * 24 23 22 44 44 H 1.08998 * 109.72177 * 136.02976 * 24 23 22 45 45 H 1.09004 * 109.63752 * 297.72864 * 25 24 23 46 46 H 1.08998 * 109.63294 * 177.12170 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1293 1.4427 0.0366 5 6 1.4968 2.1674 1.2044 6 1 0.8796 3.0441 1.0741 7 6 1.7875 1.7112 2.4727 8 7 2.5393 0.6438 2.6313 9 14 1.1136 2.6094 3.9655 10 1 -0.3704 2.6085 3.9155 11 1 1.5681 1.9242 5.2022 12 1 1.6082 4.0095 3.9657 13 7 1.5910 2.1207 -1.2233 14 6 2.5283 1.8858 -2.3297 15 6 1.9735 2.4885 -3.5947 16 6 1.1666 1.7320 -4.4239 17 6 0.6497 2.2772 -5.5851 18 6 0.9397 3.5880 -5.9208 19 6 1.7622 4.3459 -5.0839 20 6 2.2731 3.7992 -3.9251 21 8 2.0325 5.6216 -5.4636 22 6 1.1256 6.6504 -5.1746 23 6 -0.0861 6.7613 -6.0782 24 6 -1.0637 5.6059 -5.8146 25 6 -0.9309 4.5885 -6.9716 26 8 0.4278 4.1566 -7.0403 27 1 -0.3634 -1.0229 -0.0995 28 1 -0.3633 0.4253 0.9356 29 1 -0.3634 0.5976 -0.8361 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 2.7435 0.3227 3.5235 33 1 1.4616 3.1083 -1.0625 34 1 2.6656 0.8133 -2.4682 35 1 3.4878 2.3479 -2.0974 36 1 0.9386 0.7090 -4.1635 37 1 0.0203 1.6807 -6.2289 38 1 2.9042 4.3909 -3.2787 39 1 1.6648 7.5968 -5.2161 40 1 0.7726 6.5117 -4.1528 41 1 -0.5902 7.7090 -5.8889 42 1 0.2371 6.7283 -7.1186 43 1 -0.8158 5.1227 -4.8695 44 1 -2.0836 5.9885 -5.7763 45 1 -1.2123 5.0638 -7.9113 46 1 -1.5784 3.7323 -6.7824 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449244914.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:36:43 Heat of formation + Delta-G solvation = -54.950670 kcal Electronic energy + Delta-G solvation = -25574.698969 eV Core-core repulsion = 22043.622550 eV Total energy + Delta-G solvation = -3531.076419 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.82872 -38.02850 -37.91369 -36.07780 -34.16653 -32.73970 -31.11068 -30.40750 -29.27925 -28.64322 -26.47198 -24.72155 -23.82840 -23.09679 -22.14247 -21.86225 -20.52165 -19.02504 -17.99276 -17.23353 -16.86207 -16.37686 -16.09417 -15.44829 -14.92974 -14.77172 -14.40622 -14.27414 -14.08769 -13.91983 -13.61896 -13.22629 -13.07737 -12.43718 -12.31033 -12.12237 -11.98901 -11.86805 -11.55745 -11.38355 -11.27068 -11.11697 -10.92893 -10.87918 -10.77066 -10.41698 -10.34528 -10.07857 -9.75704 -9.52711 -9.39125 -8.83657 -8.73700 -8.49407 -8.24700 -7.28511 -6.04076 -4.09630 1.17672 1.32917 3.28867 3.33438 3.34003 3.36893 3.51490 4.02441 4.38552 4.49568 4.52345 4.75533 4.89747 5.06336 5.08559 5.13563 5.17795 5.27061 5.31752 5.37423 5.46704 5.53918 5.59196 5.60390 5.64890 5.80163 5.84121 5.98950 6.08596 6.21239 6.33927 6.42348 6.50631 6.68369 6.74593 6.79650 6.84177 7.21456 7.27188 7.28095 7.47643 7.71493 7.76781 7.81675 7.82380 8.22637 8.34553 8.62027 8.98721 9.55118 11.01903 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.019391 B = 0.003361 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.645824 B = 8327.727204 C = 8887.869844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.101 4.101 3 C 0.215 3.785 4 H 0.002 0.998 5 C -0.514 4.514 6 H 0.058 0.942 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.679 5.679 14 C 0.095 3.905 15 C -0.051 4.051 16 C -0.091 4.091 17 C -0.133 4.133 18 C 0.063 3.937 19 C 0.082 3.918 20 C -0.116 4.116 21 O -0.324 6.324 22 C 0.073 3.927 23 C -0.151 4.151 24 C -0.164 4.164 25 C 0.062 3.938 26 O -0.321 6.321 27 H 0.012 0.988 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.010 0.990 31 H 0.085 0.915 32 H 0.261 0.739 33 H 0.331 0.669 34 H 0.076 0.924 35 H 0.031 0.969 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.093 0.907 40 H 0.045 0.955 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.101 0.899 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.263 7.892 -17.246 19.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.108 3.892 4 H 0.019 0.981 5 C -0.552 4.552 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.310 5.310 14 C -0.035 4.035 15 C -0.052 4.052 16 C -0.110 4.110 17 C -0.152 4.152 18 C 0.019 3.981 19 C 0.039 3.961 20 C -0.135 4.135 21 O -0.241 6.241 22 C -0.002 4.002 23 C -0.189 4.189 24 C -0.202 4.202 25 C -0.013 4.013 26 O -0.238 6.238 27 H 0.031 0.969 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.029 0.971 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.148 0.852 34 H 0.095 0.905 35 H 0.049 0.951 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.111 0.889 40 H 0.063 0.937 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.119 0.881 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.357 7.353 -17.513 19.734 hybrid contribution -0.047 0.969 1.384 1.690 sum -5.404 8.322 -16.129 18.937 Atomic orbital electron populations 1.21438 0.97512 0.97100 1.01579 1.21425 0.95086 0.98158 0.99326 1.19146 0.93395 0.91657 0.84980 0.98073 1.21127 1.31773 1.11999 0.90334 0.92408 1.24872 0.95050 0.95004 0.98816 1.69873 1.37261 1.23053 1.22525 0.86642 0.79435 0.79743 0.82087 1.20224 1.21324 1.20398 1.60731 1.46888 1.16309 1.07040 1.20909 0.93701 1.00107 0.88745 1.20005 0.96101 0.92799 0.96268 1.20970 0.96434 1.00547 0.93000 1.21268 1.01727 0.94574 0.97618 1.19020 0.98175 0.91915 0.89039 1.18858 0.99893 0.84581 0.92783 1.20962 1.01617 0.95974 0.94922 1.85185 1.45178 1.13747 1.79984 1.21896 0.91304 0.89505 0.97505 1.22034 0.96172 0.98568 1.02134 1.22765 1.00414 0.97286 0.99727 1.23279 0.82053 0.96547 0.99375 1.86058 1.27523 1.77925 1.32317 0.96887 0.92990 0.93449 0.97134 0.89648 0.92875 0.85190 0.90550 0.95105 0.85165 0.85555 0.85132 0.88931 0.93680 0.90366 0.90352 0.91055 0.90342 0.88104 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 9.46 37.16 0.35 -2.27 16 2 C -0.10 -2.39 5.58 -26.73 -0.15 -2.54 16 3 C 0.22 5.18 2.30 -68.87 -0.16 5.02 16 4 H 0.00 0.04 7.84 -51.93 -0.41 -0.36 16 5 C -0.51 -13.45 7.34 -34.44 -0.25 -13.70 16 6 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -24.71 11.34 55.43 0.63 -24.08 16 9 Si 0.89 20.84 29.54 -169.99 -5.02 15.81 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.68 -13.66 5.50 -109.22 -0.60 -14.26 16 14 C 0.09 1.64 5.58 -4.98 -0.03 1.61 16 15 C -0.05 -0.78 5.44 -104.54 -0.57 -1.35 16 16 C -0.09 -1.28 9.68 -39.56 -0.38 -1.66 16 17 C -0.13 -1.76 9.97 -39.51 -0.39 -2.15 16 18 C 0.06 0.88 4.74 -38.99 -0.18 0.70 16 19 C 0.08 1.21 5.36 -39.15 -0.21 1.00 16 20 C -0.12 -1.72 9.69 -39.61 -0.38 -2.10 16 21 O -0.32 -4.61 9.67 -34.87 -0.34 -4.95 16 22 C 0.07 0.79 5.93 36.43 0.22 1.01 16 23 C -0.15 -1.37 5.66 -27.14 -0.15 -1.52 16 24 C -0.16 -1.55 5.67 -25.55 -0.14 -1.69 16 25 C 0.06 0.60 6.42 38.02 0.24 0.84 16 26 O -0.32 -4.25 9.36 -36.11 -0.34 -4.59 16 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.05 1.24 7.37 -51.93 -0.38 0.86 16 29 H 0.05 1.01 7.50 -51.93 -0.39 0.62 16 30 H 0.01 0.22 7.43 -51.93 -0.39 -0.16 16 31 H 0.09 2.25 6.13 -51.93 -0.32 1.93 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.33 6.65 8.24 -39.29 -0.32 6.33 16 34 H 0.08 1.33 7.34 -51.92 -0.38 0.95 16 35 H 0.03 0.54 8.08 -51.93 -0.42 0.12 16 36 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 38 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.04 0.50 7.81 -51.93 -0.41 0.09 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.75 7.50 -51.93 -0.39 0.36 16 43 H 0.07 0.82 6.57 -51.93 -0.34 0.48 16 44 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 361.59 15.07 5.45 5.45 Total: -1.00 -28.58 361.59 -10.00 -38.57 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -7.48 Total: 5.21 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -2.29 Total: -17.17 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.03 Total: -38.34 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.68 Total: -9.54 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.58 -10.00 -38.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449244914.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.376 kcal (2) G-P(sol) polarization free energy of solvation -28.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds