Wall clock time and date at job start Fri Apr 10 2020 21:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46789 * 2 1 4 4 H 1.09002 * 109.46727 * 177.95964 * 3 2 1 5 5 C 1.50695 * 109.47445 * 57.96298 * 3 2 1 6 6 H 1.08002 * 120.00110 * 240.00313 * 5 3 2 7 7 C 1.37882 * 120.00132 * 59.99292 * 5 3 2 8 8 N 1.31517 * 119.99971 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99937 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.46977 * 60.00536 * 9 7 5 11 11 H 1.48503 * 109.46825 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47023 * 299.99875 * 9 7 5 13 13 N 1.46900 * 109.47516 * 297.95668 * 3 2 1 14 14 C 1.46897 * 111.00201 * 273.74973 * 13 3 2 15 15 C 1.50704 * 109.47077 * 174.87092 * 14 13 3 16 16 C 1.38246 * 119.96799 * 269.98056 * 15 14 13 17 17 C 1.38300 * 120.40079 * 179.82876 * 16 15 14 18 18 C 1.38380 * 119.92075 * 359.94886 * 17 16 15 19 19 C 1.39693 * 119.47037 * 0.43720 * 18 17 16 20 20 C 1.37937 * 120.41797 * 359.41174 * 19 18 17 21 21 O 1.35818 * 117.34486 * 179.17227 * 19 18 17 22 22 C 1.40155 * 120.20355 * 83.24861 * 21 19 18 23 23 C 1.51558 * 116.62203 * 281.13133 * 22 21 19 24 24 C 1.53624 * 110.57411 * 71.72572 * 23 22 21 25 25 C 1.54638 * 108.16752 * 255.70015 * 24 23 22 26 26 O 1.35597 * 121.22906 * 181.19742 * 18 17 16 27 27 H 1.09003 * 109.47275 * 174.44467 * 1 2 3 28 28 H 1.09002 * 109.46894 * 294.44460 * 1 2 3 29 29 H 1.09002 * 109.47508 * 54.44529 * 1 2 3 30 30 H 1.09006 * 109.47073 * 240.00381 * 2 1 3 31 31 H 1.08995 * 109.47311 * 120.00190 * 2 1 3 32 32 H 0.96994 * 120.00162 * 180.02562 * 8 7 5 33 33 H 1.00899 * 110.99662 * 149.79273 * 13 3 2 34 34 H 1.09009 * 109.46976 * 54.88076 * 14 13 3 35 35 H 1.08996 * 109.47353 * 294.87873 * 14 13 3 36 36 H 1.07999 * 119.79819 * 359.80974 * 16 15 14 37 37 H 1.08003 * 120.03896 * 179.97438 * 17 16 15 38 38 H 1.07994 * 120.14027 * 180.32473 * 20 19 18 39 39 H 1.08997 * 108.02317 * 159.33400 * 22 21 19 40 40 H 1.08995 * 108.02338 * 42.93157 * 22 21 19 41 41 H 1.08994 * 109.25911 * 192.01223 * 23 22 21 42 42 H 1.09001 * 109.25426 * 311.44837 * 23 22 21 43 43 H 1.09000 * 109.72430 * 15.37219 * 24 23 22 44 44 H 1.08998 * 109.72177 * 136.02976 * 24 23 22 45 45 H 1.09004 * 109.63752 * 297.72864 * 25 24 23 46 46 H 1.08998 * 109.63294 * 177.12170 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1293 1.4427 0.0366 5 6 1.4968 2.1674 1.2044 6 1 0.8796 3.0441 1.0741 7 6 1.7875 1.7112 2.4727 8 7 2.5393 0.6438 2.6313 9 14 1.1136 2.6094 3.9655 10 1 -0.3704 2.6085 3.9155 11 1 1.5681 1.9242 5.2022 12 1 1.6082 4.0095 3.9657 13 7 1.5910 2.1207 -1.2233 14 6 2.5283 1.8858 -2.3297 15 6 1.9735 2.4885 -3.5947 16 6 1.1666 1.7320 -4.4239 17 6 0.6497 2.2772 -5.5851 18 6 0.9397 3.5880 -5.9208 19 6 1.7622 4.3459 -5.0839 20 6 2.2731 3.7992 -3.9251 21 8 2.0325 5.6216 -5.4636 22 6 1.1256 6.6504 -5.1746 23 6 -0.0861 6.7613 -6.0782 24 6 -1.0637 5.6059 -5.8146 25 6 -0.9309 4.5885 -6.9716 26 8 0.4278 4.1566 -7.0403 27 1 -0.3634 -1.0229 -0.0995 28 1 -0.3633 0.4253 0.9356 29 1 -0.3634 0.5976 -0.8361 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 2.7435 0.3227 3.5235 33 1 1.4616 3.1083 -1.0625 34 1 2.6656 0.8133 -2.4682 35 1 3.4878 2.3479 -2.0974 36 1 0.9386 0.7090 -4.1635 37 1 0.0203 1.6807 -6.2289 38 1 2.9042 4.3909 -3.2787 39 1 1.6648 7.5968 -5.2161 40 1 0.7726 6.5117 -4.1528 41 1 -0.5902 7.7090 -5.8889 42 1 0.2371 6.7283 -7.1186 43 1 -0.8158 5.1227 -4.8695 44 1 -2.0836 5.9885 -5.7763 45 1 -1.2123 5.0638 -7.9113 46 1 -1.5784 3.7323 -6.7824 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449244914.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:36:42 Heat of formation + Delta-G solvation = -70.129068 kcal Electronic energy + Delta-G solvation = -25575.357154 eV Core-core repulsion = 22043.622550 eV Total energy + Delta-G solvation = -3531.734604 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.83216 -39.20045 -38.89227 -37.71763 -35.16413 -34.35586 -32.81597 -31.57475 -30.63095 -29.49155 -28.22495 -26.04542 -25.14602 -24.73385 -23.13161 -22.88922 -21.52048 -20.88448 -19.04027 -18.47834 -18.02785 -17.76507 -17.17399 -16.82954 -16.36622 -15.83495 -15.75845 -15.54517 -15.32895 -15.07027 -14.97822 -14.81516 -14.09875 -13.95756 -13.85194 -13.32858 -13.18124 -13.15798 -12.82156 -12.76049 -12.63699 -12.45957 -12.36733 -12.27603 -12.07806 -11.89007 -11.65705 -11.59311 -11.29820 -11.18608 -10.79104 -10.52654 -10.47117 -9.83575 -9.37701 -8.99079 -8.08411 -6.20270 0.08775 0.24241 1.43245 1.44191 1.51276 2.28728 2.44228 2.58110 2.97529 3.20725 3.72577 3.72840 3.79185 3.87734 3.98970 4.05333 4.26486 4.31572 4.34648 4.39101 4.44434 4.49501 4.61719 4.65538 4.69148 4.76699 4.83567 4.86051 4.91623 4.96931 4.98210 5.09571 5.20357 5.28153 5.32971 5.35285 5.40948 5.58130 5.62241 5.66959 5.72911 5.84112 5.92068 6.29678 6.33574 6.48539 6.78326 6.82022 7.02725 7.48282 8.96451 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.019391 B = 0.003361 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.645824 B = 8327.727204 C = 8887.869844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.097 4.097 3 C 0.221 3.779 4 H -0.033 1.033 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 0.952 3.048 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.671 5.671 14 C 0.101 3.899 15 C -0.062 4.062 16 C -0.092 4.092 17 C -0.130 4.130 18 C 0.064 3.936 19 C 0.073 3.927 20 C -0.123 4.123 21 O -0.342 6.342 22 C 0.062 3.938 23 C -0.147 4.147 24 C -0.164 4.164 25 C 0.056 3.944 26 O -0.336 6.336 27 H 0.034 0.966 28 H 0.028 0.972 29 H 0.054 0.946 30 H 0.024 0.976 31 H 0.056 0.944 32 H 0.260 0.740 33 H 0.330 0.670 34 H 0.075 0.925 35 H 0.025 0.975 36 H 0.140 0.860 37 H 0.151 0.849 38 H 0.129 0.871 39 H 0.111 0.889 40 H 0.038 0.962 41 H 0.103 0.897 42 H 0.075 0.925 43 H 0.046 0.954 44 H 0.101 0.899 45 H 0.126 0.874 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.068 8.795 -18.677 21.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.136 4.136 3 C 0.113 3.887 4 H -0.016 1.016 5 C -0.562 4.562 6 H 0.074 0.926 7 C -0.180 4.180 8 N -0.555 5.555 9 Si 0.778 3.222 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.301 5.301 14 C -0.028 4.028 15 C -0.063 4.063 16 C -0.110 4.110 17 C -0.148 4.148 18 C 0.020 3.980 19 C 0.029 3.971 20 C -0.142 4.142 21 O -0.259 6.259 22 C -0.012 4.012 23 C -0.184 4.184 24 C -0.201 4.201 25 C -0.018 4.018 26 O -0.253 6.253 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.147 0.853 34 H 0.094 0.906 35 H 0.043 0.957 36 H 0.158 0.842 37 H 0.168 0.832 38 H 0.146 0.854 39 H 0.129 0.871 40 H 0.056 0.944 41 H 0.122 0.878 42 H 0.094 0.906 43 H 0.065 0.935 44 H 0.120 0.880 45 H 0.144 0.856 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.173 8.270 -18.962 21.895 hybrid contribution 0.510 0.758 1.715 1.943 sum -6.663 9.029 -17.247 20.576 Atomic orbital electron populations 1.21294 0.96050 0.98442 1.00575 1.21302 0.96259 0.97510 0.98539 1.18941 0.91192 0.92394 0.86195 1.01574 1.21404 1.31493 1.12002 0.91340 0.92579 1.25586 0.95352 0.95683 1.01418 1.70008 1.38337 1.24278 1.22897 0.85709 0.78896 0.78728 0.78890 1.19724 1.21226 1.19854 1.60652 1.47411 1.15958 1.06115 1.20831 0.93023 1.00176 0.88739 1.19762 0.97496 0.93226 0.95801 1.21087 0.95958 1.00854 0.93124 1.21461 1.01525 0.94423 0.97423 1.19144 0.97757 0.92211 0.88917 1.18961 1.00059 0.85169 0.92884 1.20962 1.01926 0.95916 0.95388 1.85144 1.46646 1.13976 1.80115 1.22181 0.92097 0.89198 0.97725 1.22026 0.95343 0.99708 1.01352 1.22772 1.01779 0.97231 0.98339 1.23570 0.80335 0.97135 1.00759 1.86020 1.29424 1.78011 1.31846 0.94688 0.95269 0.92658 0.95719 0.92569 0.93035 0.85265 0.90648 0.95701 0.84221 0.83172 0.85351 0.87127 0.94350 0.87843 0.90607 0.93511 0.88030 0.85637 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.60 9.46 71.98 0.68 -3.92 16 2 C -0.10 -4.62 5.58 30.59 0.17 -4.45 16 3 C 0.22 10.84 2.30 44.17 0.10 10.94 16 4 H -0.03 -1.83 7.84 -2.39 -0.02 -1.85 16 5 C -0.52 -27.75 7.34 25.60 0.19 -27.56 16 6 H 0.06 2.93 7.60 -2.91 -0.02 2.91 16 7 C 0.02 1.02 5.30 84.66 0.45 1.47 16 8 N -0.92 -51.90 11.34 21.45 0.24 -51.66 16 9 Si 0.95 42.88 29.54 68.60 2.03 44.91 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 13 N -0.67 -27.20 5.50 -499.46 -2.75 -29.95 16 14 C 0.10 3.54 5.58 85.56 0.48 4.02 16 15 C -0.06 -1.89 5.44 -19.81 -0.11 -2.00 16 16 C -0.09 -2.47 9.68 22.29 0.22 -2.26 16 17 C -0.13 -3.20 9.97 22.32 0.22 -2.98 16 18 C 0.06 1.72 4.74 22.66 0.11 1.83 16 19 C 0.07 2.12 5.36 22.55 0.12 2.24 16 20 C -0.12 -3.68 9.69 22.25 0.22 -3.46 16 21 O -0.34 -9.56 9.67 -67.78 -0.66 -10.21 16 22 C 0.06 1.29 5.93 71.51 0.42 1.71 16 23 C -0.15 -2.32 5.66 30.33 0.17 -2.15 16 24 C -0.16 -2.70 5.67 31.36 0.18 -2.52 16 25 C 0.06 0.93 6.42 72.54 0.47 1.39 16 26 O -0.34 -8.24 9.36 -72.23 -0.68 -8.91 16 27 H 0.03 1.32 8.14 -2.39 -0.02 1.31 16 28 H 0.03 1.36 7.37 -2.39 -0.02 1.34 16 29 H 0.05 2.27 7.50 -2.39 -0.02 2.26 16 30 H 0.02 1.07 7.43 -2.38 -0.02 1.05 16 31 H 0.06 3.01 6.13 -2.39 -0.01 3.00 16 32 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 33 H 0.33 13.43 8.24 -89.69 -0.74 12.69 16 34 H 0.08 2.63 7.34 -2.38 -0.02 2.61 16 35 H 0.02 0.89 8.08 -2.39 -0.02 0.87 16 36 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 37 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 38 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 39 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.04 0.83 7.81 -2.39 -0.02 0.81 16 41 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.08 1.26 7.50 -2.39 -0.02 1.25 16 43 H 0.05 1.02 6.57 -2.39 -0.02 1.00 16 44 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.13 1.46 8.14 -2.38 -0.02 1.44 16 46 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -61.53 361.59 2.50 -59.03 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 0.23 Total: 24.48 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 4.08 Total: -27.69 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -2.50 Total: -81.61 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -1.33 Total: -19.13 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -61.53 2.50 -59.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449244914.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.094 kcal (2) G-P(sol) polarization free energy of solvation -61.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds