Wall clock time and date at job start Fri Apr 10 2020 21:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47316 * 2 1 4 4 H 1.08993 * 109.47120 * 54.99902 * 3 2 1 5 5 C 1.52999 * 109.47195 * 175.00222 * 3 2 1 6 6 O 1.42905 * 109.47328 * 55.48138 * 5 3 2 7 7 N 1.46505 * 109.46788 * 294.99653 * 3 2 1 8 8 C 1.46494 * 120.00129 * 306.43984 * 7 3 2 9 9 C 1.34776 * 119.99604 * 126.43534 * 7 3 2 10 10 O 1.21287 * 119.99917 * 0.02562 * 9 7 3 11 11 C 1.50693 * 119.99984 * 180.02562 * 9 7 3 12 12 C 1.53001 * 109.47251 * 180.02562 * 11 9 7 13 13 H 1.08999 * 109.47228 * 306.47342 * 12 11 9 14 14 C 1.50701 * 109.47459 * 66.47453 * 12 11 9 15 15 H 1.08000 * 119.99667 * 35.34238 * 14 12 11 16 16 C 1.37874 * 120.00020 * 215.34669 * 14 12 11 17 17 N 1.31522 * 119.99880 * 186.05700 * 16 14 12 18 18 Si 1.86800 * 120.00445 * 6.05624 * 16 14 12 19 19 H 1.48497 * 109.47120 * 94.40820 * 18 16 14 20 20 H 1.48498 * 109.47203 * 214.41214 * 18 16 14 21 21 H 1.48511 * 109.46701 * 334.40967 * 18 16 14 22 22 C 1.50704 * 109.47244 * 186.47752 * 12 11 9 23 23 C 1.38234 * 119.99700 * 302.81666 * 22 12 11 24 24 C 1.38231 * 119.99604 * 179.78694 * 23 22 12 25 25 C 1.38228 * 120.00274 * 0.44921 * 24 23 22 26 26 C 1.38237 * 120.00273 * 359.80821 * 25 24 23 27 27 C 1.38230 * 119.99866 * 123.09639 * 22 12 11 28 28 H 1.08992 * 109.47229 * 60.00081 * 1 2 3 29 29 H 1.09000 * 109.46880 * 300.00390 * 1 2 3 30 30 H 1.08998 * 109.46829 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47286 * 119.99803 * 2 1 3 32 32 H 1.09002 * 109.47292 * 239.99934 * 2 1 3 33 33 H 1.08999 * 109.47399 * 175.48242 * 5 3 2 34 34 H 1.09004 * 109.47422 * 295.48126 * 5 3 2 35 35 H 0.96701 * 113.99804 * 180.02562 * 6 5 3 36 36 H 1.08996 * 109.47284 * 95.16651 * 8 7 3 37 37 H 1.09009 * 109.46543 * 215.16410 * 8 7 3 38 38 H 1.08992 * 109.47350 * 335.15826 * 8 7 3 39 39 H 1.09000 * 109.47126 * 299.99787 * 11 9 7 40 40 H 1.08998 * 109.47207 * 60.00332 * 11 9 7 41 41 H 0.96998 * 119.99677 * 179.97438 * 17 16 14 42 42 H 1.07998 * 120.00223 * 0.02562 * 23 22 12 43 43 H 1.08004 * 119.99790 * 180.27635 * 24 23 22 44 44 H 1.08008 * 120.00156 * 179.83246 * 25 24 23 45 45 H 1.07995 * 120.00366 * 180.02562 * 26 25 24 46 46 H 1.08000 * 120.00619 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5648 1.4443 0.1257 6 8 4.1299 0.6494 -0.9189 7 7 1.6525 2.0974 -1.2519 8 6 1.9939 1.4820 -2.5367 9 6 0.9818 3.2660 -1.2215 10 8 0.6994 3.7757 -0.1577 11 6 0.5826 3.9395 -2.5091 12 6 -0.1603 5.2398 -2.1957 13 1 -0.9867 5.0314 -1.5162 14 6 0.7877 6.2166 -1.5489 15 1 1.8231 6.2472 -1.8546 16 6 0.3332 7.0711 -0.5670 17 7 1.1275 8.0029 -0.0868 18 14 -1.4108 6.9054 0.0816 19 1 -1.4072 6.0567 1.3001 20 1 -1.9442 8.2502 0.4164 21 1 -2.2673 6.2775 -0.9565 22 6 -0.6975 5.8319 -3.4731 23 6 0.1632 6.1259 -4.5141 24 6 -0.3301 6.6649 -5.6875 25 6 -1.6828 6.9186 -5.8165 26 6 -2.5428 6.6296 -4.7735 27 6 -2.0500 6.0864 -3.6017 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.9349 2.4664 0.0451 34 1 3.8503 1.0297 1.0925 35 1 5.0957 0.6052 -0.9009 36 1 1.1504 0.8901 -2.8917 37 1 2.2222 2.2616 -3.2637 38 1 2.8633 0.8368 -2.4110 39 1 1.4748 4.1631 -3.0939 40 1 -0.0687 3.2768 -3.0790 41 1 0.8076 8.6042 0.6037 42 1 1.2205 5.9308 -4.4121 43 1 0.3417 6.8904 -6.5025 44 1 -2.0679 7.3423 -6.7323 45 1 -3.5997 6.8274 -4.8744 46 1 -2.7219 5.8606 -2.7869 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452281745.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:36:47 Heat of formation + Delta-G solvation = -63.481771 kcal Electronic energy + Delta-G solvation = -26123.643284 eV Core-core repulsion = 22592.196929 eV Total energy + Delta-G solvation = -3531.446356 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.70014 -38.53900 -37.23427 -35.18107 -34.03511 -32.75204 -31.59573 -30.18948 -29.36123 -28.48231 -26.30649 -25.70523 -23.50473 -22.63102 -21.89135 -20.86086 -19.45837 -18.43141 -17.52594 -16.95191 -16.49889 -15.87775 -15.60736 -15.46150 -14.61829 -14.29236 -14.20971 -14.01180 -13.87201 -13.44053 -12.93650 -12.77176 -12.66844 -12.64816 -12.40514 -12.25405 -12.18829 -11.84023 -11.76823 -11.66221 -11.15062 -11.11262 -10.79668 -10.77687 -10.75177 -10.54835 -10.31949 -9.97232 -9.81965 -9.48309 -9.12856 -8.82674 -8.37620 -8.18726 -8.11762 -7.77038 -5.96824 -3.92896 2.12715 2.18499 3.42259 3.46282 3.46930 3.51466 3.54033 4.26081 4.55261 4.60518 4.79011 5.08869 5.21294 5.29877 5.36073 5.47948 5.50668 5.54946 5.57474 5.65299 5.66890 5.72286 5.79936 5.89133 5.98048 5.99208 6.02548 6.06448 6.14249 6.18919 6.26651 6.31568 6.37625 6.40661 6.64171 6.73878 6.85824 7.02039 7.08173 7.17266 7.30746 7.54462 7.62218 7.75072 7.84904 7.99467 8.55199 9.01106 9.03955 9.68763 11.16086 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.013620 B = 0.005026 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.288045 B = 5569.648440 C = 6384.117924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.142 3.858 4 H 0.109 0.891 5 C 0.066 3.934 6 O -0.566 6.566 7 N -0.618 5.618 8 C 0.077 3.923 9 C 0.516 3.484 10 O -0.507 6.507 11 C -0.114 4.114 12 C 0.052 3.948 13 H 0.053 0.947 14 C -0.485 4.485 15 H 0.070 0.930 16 C 0.084 3.916 17 N -0.900 5.900 18 Si 0.876 3.124 19 H -0.276 1.276 20 H -0.296 1.296 21 H -0.258 1.258 22 C -0.034 4.034 23 C -0.107 4.107 24 C -0.126 4.126 25 C -0.151 4.151 26 C -0.124 4.124 27 C -0.138 4.138 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.372 0.628 36 H 0.041 0.959 37 H 0.062 0.938 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.261 0.739 42 H 0.116 0.884 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.527 -14.882 -5.571 15.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C 0.038 3.962 4 H 0.127 0.873 5 C -0.013 4.013 6 O -0.372 6.372 7 N -0.355 5.355 8 C -0.066 4.066 9 C 0.305 3.695 10 O -0.380 6.380 11 C -0.154 4.154 12 C 0.033 3.967 13 H 0.071 0.929 14 C -0.521 4.521 15 H 0.088 0.912 16 C -0.118 4.118 17 N -0.537 5.537 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.223 1.223 21 H -0.183 1.183 22 C -0.035 4.035 23 C -0.126 4.126 24 C -0.144 4.144 25 C -0.170 4.170 26 C -0.143 4.143 27 C -0.156 4.156 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.219 0.781 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.135 0.865 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.126 0.874 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.745 -14.494 -4.993 15.348 hybrid contribution -0.176 0.285 0.560 0.653 sum 0.568 -14.208 -4.433 14.895 Atomic orbital electron populations 1.21729 0.95706 1.00874 1.02385 1.21743 0.96071 0.95939 1.02478 1.21105 0.91809 0.93792 0.89465 0.87303 1.22674 0.94372 0.94633 0.89579 1.86431 1.24940 1.73107 1.52751 1.47916 1.58520 1.23104 1.05957 1.21866 1.01067 0.98738 0.84935 1.20887 0.76954 0.79266 0.92394 1.90704 1.53097 1.62161 1.32020 1.21688 1.01333 0.98115 0.94311 1.18218 0.96620 0.91465 0.90419 0.92938 1.20585 0.95708 1.17030 1.18821 0.91230 1.24898 0.97100 0.94161 0.95638 1.69911 1.36575 1.18494 1.28760 0.86897 0.85897 0.76647 0.80140 1.20216 1.22302 1.18255 1.20727 0.92198 0.95154 0.95400 1.20924 0.99551 0.99349 0.92732 1.21025 0.95178 1.00337 0.97830 1.20846 0.93948 1.03497 0.98659 1.20975 0.98785 1.00363 0.94139 1.21198 0.95724 1.01448 0.97263 0.92552 0.92793 0.93172 0.91675 0.90963 0.92887 0.93175 0.78069 0.94065 0.91936 0.88798 0.89886 0.91526 0.92921 0.86549 0.87252 0.87462 0.87397 0.86830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.80 37.16 0.36 -1.47 16 2 C -0.12 -1.45 5.00 -26.73 -0.13 -1.58 16 3 C 0.14 2.02 2.54 -67.93 -0.17 1.84 16 4 H 0.11 1.80 6.93 -51.93 -0.36 1.44 16 5 C 0.07 0.79 6.84 37.16 0.25 1.04 16 6 O -0.57 -5.74 10.01 -35.23 -0.35 -6.09 16 7 N -0.62 -9.73 2.22 -173.94 -0.39 -10.12 16 8 C 0.08 0.97 8.90 59.84 0.53 1.51 16 9 C 0.52 10.37 7.43 -10.99 -0.08 10.29 16 10 O -0.51 -12.46 14.37 5.55 0.08 -12.38 16 11 C -0.11 -2.21 3.45 -27.89 -0.10 -2.30 16 12 C 0.05 1.21 1.28 -92.92 -0.12 1.09 16 13 H 0.05 1.30 4.50 -51.93 -0.23 1.07 16 14 C -0.48 -13.47 7.23 -34.44 -0.25 -13.71 16 15 H 0.07 2.10 8.06 -52.49 -0.42 1.67 16 16 C 0.08 2.49 5.47 -17.82 -0.10 2.39 16 17 N -0.90 -28.30 13.96 55.43 0.77 -27.52 16 18 Si 0.88 23.03 27.34 -169.99 -4.65 18.38 16 19 H -0.28 -7.45 7.11 56.52 0.40 -7.05 16 20 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 21 H -0.26 -6.24 4.33 56.52 0.24 -6.00 16 22 C -0.03 -0.73 4.77 -104.62 -0.50 -1.23 16 23 C -0.11 -2.10 8.92 -39.59 -0.35 -2.46 16 24 C -0.13 -2.16 10.05 -39.59 -0.40 -2.56 16 25 C -0.15 -2.51 10.05 -39.59 -0.40 -2.90 16 26 C -0.12 -2.19 10.05 -39.58 -0.40 -2.59 16 27 C -0.14 -2.80 9.33 -39.58 -0.37 -3.16 16 28 H 0.06 0.76 7.75 -51.93 -0.40 0.36 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.83 6.76 -51.93 -0.35 0.48 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.37 2.27 9.12 45.56 0.42 2.68 16 36 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.78 6.66 -51.92 -0.35 0.43 16 38 H 0.09 1.10 4.94 -51.93 -0.26 0.85 16 39 H 0.08 1.52 6.74 -51.93 -0.35 1.17 16 40 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 41 H 0.26 7.80 8.31 -40.82 -0.34 7.47 16 42 H 0.12 2.22 7.50 -52.49 -0.39 1.82 16 43 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 44 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 45 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 46 H 0.11 2.29 6.37 -52.49 -0.33 1.96 16 LS Contribution 362.30 15.07 5.46 5.46 Total: -1.00 -34.11 362.30 -7.84 -41.95 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -6.55 Total: 6.11 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -2.21 Total: -15.80 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.39 Total: -37.64 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.27 Total: -18.47 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -4.65 Total: 18.38 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.11 -7.84 -41.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452281745.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.531 kcal (2) G-P(sol) polarization free energy of solvation -34.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds