Wall clock time and date at job start Fri Apr 10 2020 21:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47316 * 2 1 4 4 H 1.08993 * 109.47120 * 54.99902 * 3 2 1 5 5 C 1.52999 * 109.47195 * 175.00222 * 3 2 1 6 6 O 1.42905 * 109.47328 * 55.48138 * 5 3 2 7 7 N 1.46505 * 109.46788 * 294.99653 * 3 2 1 8 8 C 1.46494 * 120.00129 * 306.43984 * 7 3 2 9 9 C 1.34776 * 119.99604 * 126.43534 * 7 3 2 10 10 O 1.21287 * 119.99917 * 0.02562 * 9 7 3 11 11 C 1.50693 * 119.99984 * 180.02562 * 9 7 3 12 12 C 1.53001 * 109.47251 * 180.02562 * 11 9 7 13 13 H 1.08999 * 109.47228 * 306.47342 * 12 11 9 14 14 C 1.50701 * 109.47459 * 66.47453 * 12 11 9 15 15 H 1.08000 * 119.99667 * 35.34238 * 14 12 11 16 16 C 1.37874 * 120.00020 * 215.34669 * 14 12 11 17 17 N 1.31522 * 119.99880 * 186.05700 * 16 14 12 18 18 Si 1.86800 * 120.00445 * 6.05624 * 16 14 12 19 19 H 1.48497 * 109.47120 * 94.40820 * 18 16 14 20 20 H 1.48498 * 109.47203 * 214.41214 * 18 16 14 21 21 H 1.48511 * 109.46701 * 334.40967 * 18 16 14 22 22 C 1.50704 * 109.47244 * 186.47752 * 12 11 9 23 23 C 1.38234 * 119.99700 * 302.81666 * 22 12 11 24 24 C 1.38231 * 119.99604 * 179.78694 * 23 22 12 25 25 C 1.38228 * 120.00274 * 0.44921 * 24 23 22 26 26 C 1.38237 * 120.00273 * 359.80821 * 25 24 23 27 27 C 1.38230 * 119.99866 * 123.09639 * 22 12 11 28 28 H 1.08992 * 109.47229 * 60.00081 * 1 2 3 29 29 H 1.09000 * 109.46880 * 300.00390 * 1 2 3 30 30 H 1.08998 * 109.46829 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47286 * 119.99803 * 2 1 3 32 32 H 1.09002 * 109.47292 * 239.99934 * 2 1 3 33 33 H 1.08999 * 109.47399 * 175.48242 * 5 3 2 34 34 H 1.09004 * 109.47422 * 295.48126 * 5 3 2 35 35 H 0.96701 * 113.99804 * 180.02562 * 6 5 3 36 36 H 1.08996 * 109.47284 * 95.16651 * 8 7 3 37 37 H 1.09009 * 109.46543 * 215.16410 * 8 7 3 38 38 H 1.08992 * 109.47350 * 335.15826 * 8 7 3 39 39 H 1.09000 * 109.47126 * 299.99787 * 11 9 7 40 40 H 1.08998 * 109.47207 * 60.00332 * 11 9 7 41 41 H 0.96998 * 119.99677 * 179.97438 * 17 16 14 42 42 H 1.07998 * 120.00223 * 0.02562 * 23 22 12 43 43 H 1.08004 * 119.99790 * 180.27635 * 24 23 22 44 44 H 1.08008 * 120.00156 * 179.83246 * 25 24 23 45 45 H 1.07995 * 120.00366 * 180.02562 * 26 25 24 46 46 H 1.08000 * 120.00619 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5648 1.4443 0.1257 6 8 4.1299 0.6494 -0.9189 7 7 1.6525 2.0974 -1.2519 8 6 1.9939 1.4820 -2.5367 9 6 0.9818 3.2660 -1.2215 10 8 0.6994 3.7757 -0.1577 11 6 0.5826 3.9395 -2.5091 12 6 -0.1603 5.2398 -2.1957 13 1 -0.9867 5.0314 -1.5162 14 6 0.7877 6.2166 -1.5489 15 1 1.8231 6.2472 -1.8546 16 6 0.3332 7.0711 -0.5670 17 7 1.1275 8.0029 -0.0868 18 14 -1.4108 6.9054 0.0816 19 1 -1.4072 6.0567 1.3001 20 1 -1.9442 8.2502 0.4164 21 1 -2.2673 6.2775 -0.9565 22 6 -0.6975 5.8319 -3.4731 23 6 0.1632 6.1259 -4.5141 24 6 -0.3301 6.6649 -5.6875 25 6 -1.6828 6.9186 -5.8165 26 6 -2.5428 6.6296 -4.7735 27 6 -2.0500 6.0864 -3.6017 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.9349 2.4664 0.0451 34 1 3.8503 1.0297 1.0925 35 1 5.0957 0.6052 -0.9009 36 1 1.1504 0.8901 -2.8917 37 1 2.2222 2.2616 -3.2637 38 1 2.8633 0.8368 -2.4110 39 1 1.4748 4.1631 -3.0939 40 1 -0.0687 3.2768 -3.0790 41 1 0.8076 8.6042 0.6037 42 1 1.2205 5.9308 -4.4121 43 1 0.3417 6.8904 -6.5025 44 1 -2.0679 7.3423 -6.7323 45 1 -3.5997 6.8274 -4.8744 46 1 -2.7219 5.8606 -2.7869 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452281745.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:36:46 Heat of formation + Delta-G solvation = -86.140990 kcal Electronic energy + Delta-G solvation = -26124.625862 eV Core-core repulsion = 22592.196929 eV Total energy + Delta-G solvation = -3532.428933 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.12446 -39.97115 -38.43778 -36.31584 -35.79990 -34.07070 -33.52539 -31.61426 -30.62331 -29.75823 -27.90964 -27.17415 -24.69230 -24.17136 -23.32883 -22.14056 -20.95320 -19.79283 -19.06431 -18.64461 -17.83074 -17.19335 -16.94732 -16.78984 -16.30830 -15.83785 -15.50267 -15.21036 -15.19875 -14.88808 -14.68226 -14.24870 -14.13505 -13.84777 -13.80119 -13.59311 -13.41285 -13.30910 -13.24131 -12.92265 -12.76431 -12.70130 -12.21652 -12.07009 -11.93103 -11.87543 -11.79828 -11.79592 -11.39253 -11.04491 -10.91339 -10.61528 -10.39236 -9.62169 -9.41862 -9.29361 -8.24322 -6.19973 0.68747 0.73961 1.27841 1.36703 1.39371 1.91371 2.20831 2.39686 3.07089 3.24498 3.38642 3.70748 4.02232 4.05554 4.11294 4.23728 4.30770 4.32482 4.40445 4.44555 4.47669 4.49342 4.54768 4.62935 4.68771 4.77598 4.82413 4.84799 4.87044 5.02443 5.05125 5.06270 5.18205 5.21843 5.32129 5.37638 5.39995 5.42042 5.68046 5.77146 5.81305 5.84704 6.02197 6.32325 6.35854 6.60689 6.78700 6.90926 7.43617 7.50853 8.92666 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.013620 B = 0.005026 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.288045 B = 5569.648440 C = 6384.117924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C 0.131 3.869 4 H 0.076 0.924 5 C 0.077 3.923 6 O -0.568 6.568 7 N -0.608 5.608 8 C 0.073 3.927 9 C 0.508 3.492 10 O -0.566 6.566 11 C -0.107 4.107 12 C 0.055 3.945 13 H 0.034 0.966 14 C -0.462 4.462 15 H 0.032 0.968 16 C 0.024 3.976 17 N -0.953 5.953 18 Si 0.923 3.077 19 H -0.292 1.292 20 H -0.295 1.295 21 H -0.227 1.227 22 C -0.061 4.061 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.141 4.141 26 C -0.123 4.123 27 C -0.157 4.157 28 H 0.039 0.961 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.026 0.974 34 H 0.075 0.925 35 H 0.393 0.607 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.258 0.742 42 H 0.111 0.889 43 H 0.141 0.859 44 H 0.147 0.853 45 H 0.139 0.861 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.629 -16.921 -8.531 18.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C 0.028 3.972 4 H 0.095 0.905 5 C -0.002 4.002 6 O -0.376 6.376 7 N -0.343 5.343 8 C -0.069 4.069 9 C 0.297 3.703 10 O -0.444 6.444 11 C -0.147 4.147 12 C 0.035 3.965 13 H 0.052 0.948 14 C -0.500 4.500 15 H 0.051 0.949 16 C -0.172 4.172 17 N -0.594 5.594 18 Si 0.750 3.250 19 H -0.219 1.219 20 H -0.222 1.222 21 H -0.151 1.151 22 C -0.061 4.061 23 C -0.141 4.141 24 C -0.140 4.140 25 C -0.159 4.159 26 C -0.141 4.141 27 C -0.175 4.175 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.044 0.956 34 H 0.093 0.907 35 H 0.244 0.756 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.127 0.873 39 H 0.109 0.891 40 H 0.115 0.885 41 H 0.067 0.933 42 H 0.129 0.871 43 H 0.159 0.841 44 H 0.165 0.835 45 H 0.157 0.843 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.131 -16.601 -8.014 18.434 hybrid contribution 0.195 0.804 1.320 1.558 sum 0.064 -15.797 -6.694 17.157 Atomic orbital electron populations 1.21720 0.96242 1.01831 1.00770 1.21672 0.95459 0.93940 1.03907 1.21281 0.93487 0.94838 0.87623 0.90541 1.22391 0.92709 0.93763 0.91290 1.86343 1.26980 1.72273 1.52030 1.47921 1.56667 1.21763 1.07923 1.22092 1.02434 0.99041 0.83301 1.21085 0.77112 0.80288 0.91766 1.90679 1.55836 1.64135 1.33710 1.21578 1.01766 0.96908 0.94478 1.18071 0.95226 0.92084 0.91080 0.94793 1.20782 0.94881 1.16530 1.17824 0.94923 1.25601 1.00505 0.94504 0.96629 1.70041 1.38482 1.20421 1.30480 0.86135 0.82932 0.76321 0.79622 1.21901 1.22210 1.15063 1.20486 0.93377 0.97067 0.95211 1.21002 0.99183 1.00328 0.93578 1.21395 0.96345 0.98780 0.97486 1.21336 0.93381 1.01549 0.99625 1.21336 1.00690 0.98959 0.93118 1.21279 0.95110 1.02582 0.98539 0.94166 0.94467 0.90836 0.89709 0.89836 0.95597 0.90730 0.75612 0.92214 0.91680 0.87334 0.89102 0.88506 0.93295 0.87112 0.84097 0.83505 0.84310 0.87539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.80 71.98 0.71 -2.77 16 2 C -0.11 -2.40 5.00 30.59 0.15 -2.25 16 3 C 0.13 3.71 2.54 44.99 0.11 3.83 16 4 H 0.08 2.68 6.93 -2.39 -0.02 2.67 16 5 C 0.08 1.78 6.84 71.98 0.49 2.28 16 6 O -0.57 -10.08 10.01 -148.98 -1.49 -11.57 16 7 N -0.61 -19.08 2.22 -822.61 -1.82 -20.90 16 8 C 0.07 1.70 8.90 127.77 1.14 2.84 16 9 C 0.51 21.04 7.43 87.65 0.65 21.69 16 10 O -0.57 -29.43 14.37 -3.05 -0.04 -29.47 16 11 C -0.11 -4.18 3.45 29.85 0.10 -4.07 16 12 C 0.05 2.59 1.28 -12.28 -0.02 2.58 16 13 H 0.03 1.72 4.50 -2.39 -0.01 1.71 16 14 C -0.46 -26.93 7.23 25.60 0.19 -26.74 16 15 H 0.03 2.09 8.06 -2.91 -0.02 2.06 16 16 C 0.02 1.47 5.47 84.65 0.46 1.93 16 17 N -0.95 -63.23 13.96 21.45 0.30 -62.93 16 18 Si 0.92 49.42 27.34 68.60 1.88 51.30 16 19 H -0.29 -16.24 7.11 99.48 0.71 -15.54 16 20 H -0.30 -15.54 7.11 99.48 0.71 -14.84 16 21 H -0.23 -10.91 4.33 99.48 0.43 -10.48 16 22 C -0.06 -2.57 4.77 -19.87 -0.09 -2.67 16 23 C -0.12 -4.66 8.92 22.27 0.20 -4.46 16 24 C -0.12 -3.78 10.05 22.27 0.22 -3.56 16 25 C -0.14 -4.02 10.05 22.27 0.22 -3.79 16 26 C -0.12 -3.88 10.05 22.27 0.22 -3.65 16 27 C -0.16 -6.09 9.33 22.27 0.21 -5.89 16 28 H 0.04 1.05 7.75 -2.39 -0.02 1.03 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.65 6.76 -2.39 -0.02 1.63 16 33 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.39 3.68 9.12 -74.06 -0.68 3.01 16 36 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.06 1.50 6.66 -2.38 -0.02 1.48 16 38 H 0.11 2.25 4.94 -2.39 -0.01 2.24 16 39 H 0.09 3.36 6.74 -2.39 -0.02 3.34 16 40 H 0.10 3.14 8.10 -2.39 -0.02 3.12 16 41 H 0.26 16.34 8.31 -92.71 -0.77 15.57 16 42 H 0.11 4.21 7.50 -2.91 -0.02 4.19 16 43 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 44 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 45 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 46 H 0.11 4.18 6.37 -2.91 -0.02 4.16 16 Total: -1.00 -79.76 362.30 3.81 -75.94 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 0.02 Total: 22.33 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: 4.97 Total: -24.70 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -1.52 Total: -83.83 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -1.54 Total: -41.04 kcal Atomic # 14 Polarization: 49.42 SS G_CDS: 1.88 Total: 51.30 kcal Total: -79.76 3.81 -75.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452281745.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.196 kcal (2) G-P(sol) polarization free energy of solvation -79.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds