Wall clock time and date at job start Fri Apr 10 2020 21:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47055 * 2 1 4 4 H 1.08991 * 109.47317 * 55.00511 * 3 2 1 5 5 C 1.53009 * 109.47017 * 175.00334 * 3 2 1 6 6 O 1.42894 * 109.47006 * 55.14028 * 5 3 2 7 7 N 1.46503 * 109.47278 * 294.99966 * 3 2 1 8 8 C 1.46508 * 119.99869 * 306.18955 * 7 3 2 9 9 C 1.34771 * 120.00203 * 126.18679 * 7 3 2 10 10 O 1.21281 * 119.99507 * 0.02562 * 9 7 3 11 11 C 1.50696 * 120.00184 * 180.02562 * 9 7 3 12 12 C 1.53004 * 109.47029 * 179.97438 * 11 9 7 13 13 H 1.09007 * 109.46718 * 55.00461 * 12 11 9 14 14 C 1.50691 * 109.47329 * 295.00154 * 12 11 9 15 15 H 1.08002 * 120.00239 * 325.09767 * 14 12 11 16 16 C 1.37884 * 119.99846 * 145.10027 * 14 12 11 17 17 N 1.31505 * 120.00033 * 5.12653 * 16 14 12 18 18 Si 1.86798 * 119.99899 * 185.12985 * 16 14 12 19 19 H 1.48507 * 109.47279 * 89.99896 * 18 16 14 20 20 H 1.48497 * 109.47286 * 209.99695 * 18 16 14 21 21 H 1.48505 * 109.47412 * 330.00022 * 18 16 14 22 22 C 1.50703 * 109.46889 * 174.99794 * 12 11 9 23 23 C 1.38233 * 119.99808 * 64.58830 * 22 12 11 24 24 C 1.38234 * 120.00112 * 179.78995 * 23 22 12 25 25 C 1.38240 * 119.99662 * 0.43139 * 24 23 22 26 26 C 1.38233 * 119.99849 * 359.82054 * 25 24 23 27 27 C 1.38226 * 120.00485 * 359.97110 * 26 25 24 28 28 H 1.09008 * 109.47001 * 299.99832 * 1 2 3 29 29 H 1.08998 * 109.47442 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47260 * 59.99727 * 1 2 3 31 31 H 1.08997 * 109.47675 * 120.00062 * 2 1 3 32 32 H 1.08999 * 109.47092 * 240.00255 * 2 1 3 33 33 H 1.08996 * 109.46902 * 175.14164 * 5 3 2 34 34 H 1.09000 * 109.47042 * 295.14085 * 5 3 2 35 35 H 0.96705 * 113.99850 * 180.02562 * 6 5 3 36 36 H 1.08999 * 109.46941 * 95.25372 * 8 7 3 37 37 H 1.08993 * 109.47111 * 215.25460 * 8 7 3 38 38 H 1.09003 * 109.46902 * 335.25744 * 8 7 3 39 39 H 1.08993 * 109.46997 * 299.99963 * 11 9 7 40 40 H 1.08999 * 109.47088 * 60.00455 * 11 9 7 41 41 H 0.97006 * 120.00337 * 180.02562 * 17 16 14 42 42 H 1.07996 * 119.99956 * 359.97438 * 23 22 12 43 43 H 1.08000 * 120.00441 * 180.27189 * 24 23 22 44 44 H 1.08006 * 119.99886 * 179.83929 * 25 24 23 45 45 H 1.07999 * 119.99605 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.00396 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4444 0.1256 6 8 4.1294 0.6431 -0.9142 7 7 1.6524 2.0976 -1.2518 8 6 1.9987 1.4850 -2.5368 9 6 0.9773 3.2636 -1.2214 10 8 0.6910 3.7709 -0.1576 11 6 0.5781 3.9371 -2.5090 12 6 -0.1713 5.2336 -2.1954 13 1 0.4427 5.8609 -1.5490 14 6 -1.4666 4.9089 -1.4972 15 1 -2.0134 4.0157 -1.7614 16 6 -1.9537 5.7520 -0.5210 17 7 -1.3428 6.8890 -0.2694 18 14 -3.4815 5.2790 0.4443 19 1 -3.0857 4.5127 1.6532 20 1 -4.2088 6.5075 0.8531 21 1 -4.3645 4.4408 -0.4060 22 6 -0.4627 5.9683 -3.4786 23 6 -1.3066 5.4082 -4.4193 24 6 -1.5774 6.0840 -5.5944 25 6 -0.9971 7.3159 -5.8327 26 6 -0.1490 7.8735 -4.8942 27 6 0.1183 7.1997 -3.7173 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.9353 2.4658 0.0390 34 1 3.8500 1.0354 1.0949 35 1 5.0953 0.5985 -0.8959 36 1 1.1574 0.8915 -2.8949 37 1 2.2270 2.2661 -3.2619 38 1 2.8692 0.8414 -2.4097 39 1 1.4706 4.1647 -3.0918 40 1 -0.0697 3.2727 -3.0809 41 1 -1.6853 7.4821 0.4176 42 1 -1.7568 4.4441 -4.2348 43 1 -2.2402 5.6485 -6.3275 44 1 -1.2066 7.8427 -6.7520 45 1 0.3046 8.8357 -5.0806 46 1 0.7812 7.6352 -2.9843 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452281749.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:36:52 Heat of formation + Delta-G solvation = -66.525559 kcal Electronic energy + Delta-G solvation = -26068.776690 eV Core-core repulsion = 22537.198346 eV Total energy + Delta-G solvation = -3531.578344 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.58984 -38.32530 -37.18125 -35.12171 -33.90078 -32.67399 -31.33222 -29.97624 -29.26668 -28.33796 -26.15476 -25.41772 -23.48837 -22.73876 -21.60817 -20.74913 -19.49362 -18.41523 -17.50728 -16.52363 -16.28124 -15.73476 -15.52572 -15.36468 -14.47949 -14.21823 -14.07420 -13.91385 -13.89606 -13.50592 -12.81531 -12.69118 -12.57451 -12.46188 -12.20112 -12.07576 -11.88455 -11.72145 -11.62224 -11.56685 -11.04254 -10.87393 -10.80483 -10.70885 -10.61924 -10.51329 -10.22645 -10.03046 -9.97445 -9.38165 -8.98703 -8.72805 -8.28914 -8.03968 -8.01244 -7.56817 -5.88812 -3.87856 2.32157 2.38087 3.40973 3.46395 3.48187 3.54900 3.59996 4.24506 4.55732 4.78347 4.84133 5.11356 5.28411 5.35848 5.42125 5.52123 5.53736 5.69025 5.70443 5.73387 5.76420 5.86994 5.87791 5.98786 6.06856 6.10688 6.16656 6.21728 6.31546 6.33888 6.39446 6.44634 6.53145 6.58604 6.85267 6.94189 7.06084 7.14093 7.34157 7.49190 7.51935 7.57543 7.90514 7.98935 8.06734 8.12960 8.44294 9.11863 9.15705 9.73823 11.21558 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012186 B = 0.005220 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.208723 B = 5362.433706 C = 6718.936028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.142 3.858 4 H 0.109 0.891 5 C 0.067 3.933 6 O -0.565 6.565 7 N -0.621 5.621 8 C 0.078 3.922 9 C 0.514 3.486 10 O -0.499 6.499 11 C -0.118 4.118 12 C 0.079 3.921 13 H 0.072 0.928 14 C -0.490 4.490 15 H 0.049 0.951 16 C 0.079 3.921 17 N -0.882 5.882 18 Si 0.885 3.115 19 H -0.281 1.281 20 H -0.289 1.289 21 H -0.276 1.276 22 C -0.021 4.021 23 C -0.114 4.114 24 C -0.132 4.132 25 C -0.156 4.156 26 C -0.128 4.128 27 C -0.120 4.120 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.371 0.629 36 H 0.041 0.959 37 H 0.060 0.940 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.258 0.742 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.645 -10.504 -4.705 15.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C 0.038 3.962 4 H 0.127 0.873 5 C -0.011 4.011 6 O -0.371 6.371 7 N -0.358 5.358 8 C -0.065 4.065 9 C 0.302 3.698 10 O -0.370 6.370 11 C -0.158 4.158 12 C 0.060 3.940 13 H 0.090 0.910 14 C -0.527 4.527 15 H 0.067 0.933 16 C -0.124 4.124 17 N -0.519 5.519 18 Si 0.713 3.287 19 H -0.207 1.207 20 H -0.215 1.215 21 H -0.201 1.201 22 C -0.021 4.021 23 C -0.132 4.132 24 C -0.150 4.150 25 C -0.174 4.174 26 C -0.146 4.146 27 C -0.138 4.138 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.218 0.782 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.110 0.890 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.068 0.932 42 H 0.131 0.869 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.815 -10.098 -4.141 14.030 hybrid contribution -0.423 -0.062 0.691 0.813 sum 8.392 -10.160 -3.450 13.622 Atomic orbital electron populations 1.21730 0.95466 1.00797 1.02754 1.21731 0.96265 0.95861 1.02278 1.21091 0.91459 0.94003 0.89680 0.87310 1.22680 0.94574 0.94197 0.89685 1.86462 1.24830 1.72716 1.53083 1.47985 1.58473 1.23634 1.05743 1.21840 1.00976 0.98671 0.85011 1.20956 0.76521 0.79663 0.92624 1.90736 1.51408 1.63011 1.31872 1.21788 0.99919 1.00185 0.93934 1.17854 0.96777 0.89838 0.89546 0.90995 1.20668 1.05719 1.07359 1.18948 0.93253 1.24790 0.96541 0.94714 0.96335 1.69905 1.39989 1.09870 1.32154 0.86721 0.83305 0.77802 0.80841 1.20693 1.21535 1.20148 1.20760 0.92248 0.94315 0.94794 1.20948 0.98660 1.00245 0.93378 1.20975 1.00494 0.95733 0.97771 1.20789 1.00546 0.96752 0.99334 1.20972 0.99469 0.99185 0.95004 1.21084 1.00798 0.95759 0.96194 0.92708 0.93291 0.92297 0.91846 0.91075 0.93265 0.93211 0.78198 0.94071 0.92107 0.88971 0.91871 0.90715 0.93216 0.86924 0.87696 0.87836 0.87682 0.86917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.80 37.16 0.36 -1.71 16 2 C -0.12 -1.53 5.00 -26.73 -0.13 -1.67 16 3 C 0.14 2.04 2.54 -67.92 -0.17 1.87 16 4 H 0.11 1.84 6.92 -51.93 -0.36 1.48 16 5 C 0.07 0.77 6.84 37.16 0.25 1.02 16 6 O -0.57 -5.52 10.00 -35.23 -0.35 -5.87 16 7 N -0.62 -9.97 2.22 -173.93 -0.39 -10.36 16 8 C 0.08 1.02 8.90 59.85 0.53 1.55 16 9 C 0.51 10.56 7.42 -10.99 -0.08 10.48 16 10 O -0.50 -12.55 14.32 5.56 0.08 -12.47 16 11 C -0.12 -2.37 3.58 -27.88 -0.10 -2.47 16 12 C 0.08 1.92 1.69 -92.92 -0.16 1.76 16 13 H 0.07 2.01 6.94 -51.93 -0.36 1.65 16 14 C -0.49 -13.32 6.32 -34.44 -0.22 -13.54 16 15 H 0.05 1.35 7.82 -52.49 -0.41 0.94 16 16 C 0.08 2.27 5.45 -17.82 -0.10 2.17 16 17 N -0.88 -26.22 12.84 55.43 0.71 -25.51 16 18 Si 0.88 22.54 29.54 -169.99 -5.02 17.52 16 19 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 C -0.02 -0.46 4.77 -104.62 -0.50 -0.96 16 23 C -0.11 -2.35 8.87 -39.58 -0.35 -2.70 16 24 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 25 C -0.16 -2.75 10.05 -39.58 -0.40 -3.15 16 26 C -0.13 -2.40 10.05 -39.59 -0.40 -2.79 16 27 C -0.12 -2.57 9.67 -39.59 -0.38 -2.95 16 28 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.92 7.75 -51.93 -0.40 0.52 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.87 6.77 -51.93 -0.35 0.52 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.37 2.05 9.12 45.56 0.42 2.47 16 36 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.76 6.66 -51.93 -0.35 0.42 16 38 H 0.09 1.10 4.94 -51.93 -0.26 0.84 16 39 H 0.06 1.13 7.41 -51.93 -0.38 0.75 16 40 H 0.07 1.41 7.81 -51.93 -0.41 1.01 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.11 2.26 7.79 -52.49 -0.41 1.85 16 43 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 44 H 0.10 1.53 8.06 -52.48 -0.42 1.10 16 45 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 46 H 0.11 2.43 7.95 -52.49 -0.42 2.01 16 LS Contribution 370.48 15.07 5.58 5.58 Total: -1.00 -32.76 370.48 -8.25 -41.01 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -6.63 Total: 6.00 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -2.24 Total: -15.90 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.33 Total: -35.87 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.27 Total: -18.34 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.76 -8.25 -41.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452281749.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.513 kcal (2) G-P(sol) polarization free energy of solvation -32.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds