Wall clock time and date at job start Fri Apr 10 2020 21:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47055 * 2 1 4 4 H 1.08991 * 109.47317 * 55.00511 * 3 2 1 5 5 C 1.53009 * 109.47017 * 175.00334 * 3 2 1 6 6 O 1.42894 * 109.47006 * 55.14028 * 5 3 2 7 7 N 1.46503 * 109.47278 * 294.99966 * 3 2 1 8 8 C 1.46508 * 119.99869 * 306.18955 * 7 3 2 9 9 C 1.34771 * 120.00203 * 126.18679 * 7 3 2 10 10 O 1.21281 * 119.99507 * 0.02562 * 9 7 3 11 11 C 1.50696 * 120.00184 * 180.02562 * 9 7 3 12 12 C 1.53004 * 109.47029 * 179.97438 * 11 9 7 13 13 H 1.09007 * 109.46718 * 55.00461 * 12 11 9 14 14 C 1.50691 * 109.47329 * 295.00154 * 12 11 9 15 15 H 1.08002 * 120.00239 * 325.09767 * 14 12 11 16 16 C 1.37884 * 119.99846 * 145.10027 * 14 12 11 17 17 N 1.31505 * 120.00033 * 5.12653 * 16 14 12 18 18 Si 1.86798 * 119.99899 * 185.12985 * 16 14 12 19 19 H 1.48507 * 109.47279 * 89.99896 * 18 16 14 20 20 H 1.48497 * 109.47286 * 209.99695 * 18 16 14 21 21 H 1.48505 * 109.47412 * 330.00022 * 18 16 14 22 22 C 1.50703 * 109.46889 * 174.99794 * 12 11 9 23 23 C 1.38233 * 119.99808 * 64.58830 * 22 12 11 24 24 C 1.38234 * 120.00112 * 179.78995 * 23 22 12 25 25 C 1.38240 * 119.99662 * 0.43139 * 24 23 22 26 26 C 1.38233 * 119.99849 * 359.82054 * 25 24 23 27 27 C 1.38226 * 120.00485 * 359.97110 * 26 25 24 28 28 H 1.09008 * 109.47001 * 299.99832 * 1 2 3 29 29 H 1.08998 * 109.47442 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47260 * 59.99727 * 1 2 3 31 31 H 1.08997 * 109.47675 * 120.00062 * 2 1 3 32 32 H 1.08999 * 109.47092 * 240.00255 * 2 1 3 33 33 H 1.08996 * 109.46902 * 175.14164 * 5 3 2 34 34 H 1.09000 * 109.47042 * 295.14085 * 5 3 2 35 35 H 0.96705 * 113.99850 * 180.02562 * 6 5 3 36 36 H 1.08999 * 109.46941 * 95.25372 * 8 7 3 37 37 H 1.08993 * 109.47111 * 215.25460 * 8 7 3 38 38 H 1.09003 * 109.46902 * 335.25744 * 8 7 3 39 39 H 1.08993 * 109.46997 * 299.99963 * 11 9 7 40 40 H 1.08999 * 109.47088 * 60.00455 * 11 9 7 41 41 H 0.97006 * 120.00337 * 180.02562 * 17 16 14 42 42 H 1.07996 * 119.99956 * 359.97438 * 23 22 12 43 43 H 1.08000 * 120.00441 * 180.27189 * 24 23 22 44 44 H 1.08006 * 119.99886 * 179.83929 * 25 24 23 45 45 H 1.07999 * 119.99605 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.00396 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4444 0.1256 6 8 4.1294 0.6431 -0.9142 7 7 1.6524 2.0976 -1.2518 8 6 1.9987 1.4850 -2.5368 9 6 0.9773 3.2636 -1.2214 10 8 0.6910 3.7709 -0.1576 11 6 0.5781 3.9371 -2.5090 12 6 -0.1713 5.2336 -2.1954 13 1 0.4427 5.8609 -1.5490 14 6 -1.4666 4.9089 -1.4972 15 1 -2.0134 4.0157 -1.7614 16 6 -1.9537 5.7520 -0.5210 17 7 -1.3428 6.8890 -0.2694 18 14 -3.4815 5.2790 0.4443 19 1 -3.0857 4.5127 1.6532 20 1 -4.2088 6.5075 0.8531 21 1 -4.3645 4.4408 -0.4060 22 6 -0.4627 5.9683 -3.4786 23 6 -1.3066 5.4082 -4.4193 24 6 -1.5774 6.0840 -5.5944 25 6 -0.9971 7.3159 -5.8327 26 6 -0.1490 7.8735 -4.8942 27 6 0.1183 7.1997 -3.7173 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.9353 2.4658 0.0390 34 1 3.8500 1.0354 1.0949 35 1 5.0953 0.5985 -0.8959 36 1 1.1574 0.8915 -2.8949 37 1 2.2270 2.2661 -3.2619 38 1 2.8692 0.8414 -2.4097 39 1 1.4706 4.1647 -3.0918 40 1 -0.0697 3.2727 -3.0809 41 1 -1.6853 7.4821 0.4176 42 1 -1.7568 4.4441 -4.2348 43 1 -2.2402 5.6485 -6.3275 44 1 -1.2066 7.8427 -6.7520 45 1 0.3046 8.8357 -5.0806 46 1 0.7812 7.6352 -2.9843 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452281749.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:36:51 Heat of formation + Delta-G solvation = -86.946331 kcal Electronic energy + Delta-G solvation = -26069.662201 eV Core-core repulsion = 22537.198346 eV Total energy + Delta-G solvation = -3532.463855 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.03677 -39.84222 -38.38710 -36.26833 -35.72352 -34.00355 -33.22637 -31.50229 -30.57122 -29.67207 -27.62988 -27.09543 -24.79837 -24.22332 -23.14633 -22.09039 -21.04220 -19.77926 -18.62088 -18.45165 -17.72287 -17.15065 -16.85176 -16.68458 -16.41501 -15.67532 -15.49340 -15.23515 -15.17844 -14.89449 -14.35667 -14.12901 -13.94909 -13.65738 -13.63039 -13.49246 -13.44551 -13.29510 -13.15163 -12.87135 -12.72591 -12.53228 -12.47494 -12.17574 -11.88092 -11.82907 -11.79658 -11.66987 -11.28695 -10.95278 -10.87961 -10.55689 -10.24729 -9.54245 -9.37475 -9.18627 -8.04354 -6.06422 0.77899 0.84312 1.33126 1.37852 1.42591 1.98918 2.25593 2.45263 3.18788 3.35781 3.41303 3.73486 4.07245 4.09906 4.23678 4.26058 4.35891 4.40803 4.44838 4.49119 4.53289 4.56781 4.63454 4.70035 4.71550 4.80982 4.84981 4.93044 4.98558 5.02818 5.05417 5.17661 5.21295 5.33083 5.37885 5.41726 5.52831 5.63627 5.78093 5.83740 5.87712 5.96147 6.17634 6.42278 6.47089 6.65936 6.95264 7.01072 7.55709 7.60147 9.05656 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012186 B = 0.005220 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.208723 B = 5362.433706 C = 6718.936028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C 0.131 3.869 4 H 0.075 0.925 5 C 0.080 3.920 6 O -0.569 6.569 7 N -0.610 5.610 8 C 0.075 3.925 9 C 0.508 3.492 10 O -0.559 6.559 11 C -0.109 4.109 12 C 0.083 3.917 13 H 0.023 0.977 14 C -0.482 4.482 15 H 0.043 0.957 16 C 0.025 3.975 17 N -0.917 5.917 18 Si 0.933 3.067 19 H -0.289 1.289 20 H -0.285 1.285 21 H -0.264 1.264 22 C -0.046 4.046 23 C -0.127 4.127 24 C -0.126 4.126 25 C -0.147 4.147 26 C -0.127 4.127 27 C -0.144 4.144 28 H 0.033 0.967 29 H 0.072 0.928 30 H 0.035 0.965 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.394 0.606 36 H 0.050 0.950 37 H 0.066 0.934 38 H 0.111 0.889 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.253 0.747 42 H 0.112 0.888 43 H 0.141 0.859 44 H 0.145 0.855 45 H 0.133 0.867 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.008 -12.268 -7.363 17.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C 0.027 3.973 4 H 0.093 0.907 5 C 0.002 3.998 6 O -0.378 6.378 7 N -0.345 5.345 8 C -0.067 4.067 9 C 0.298 3.702 10 O -0.436 6.436 11 C -0.149 4.149 12 C 0.064 3.936 13 H 0.042 0.958 14 C -0.520 4.520 15 H 0.061 0.939 16 C -0.174 4.174 17 N -0.557 5.557 18 Si 0.760 3.240 19 H -0.216 1.216 20 H -0.211 1.211 21 H -0.188 1.188 22 C -0.047 4.047 23 C -0.145 4.145 24 C -0.143 4.143 25 C -0.165 4.165 26 C -0.145 4.145 27 C -0.163 4.163 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.054 0.946 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.245 0.755 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.129 0.871 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.062 0.938 42 H 0.130 0.870 43 H 0.158 0.842 44 H 0.162 0.838 45 H 0.151 0.849 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.214 -11.924 -6.841 16.549 hybrid contribution -0.438 0.416 1.399 1.524 sum 8.777 -11.507 -5.441 15.462 Atomic orbital electron populations 1.21719 0.96769 1.01587 1.00557 1.21670 0.94950 0.94436 1.03886 1.21272 0.93825 0.94567 0.87653 0.90711 1.22372 0.92159 0.93977 0.91338 1.86360 1.27010 1.71985 1.52416 1.47957 1.56621 1.22172 1.07779 1.22062 1.02110 0.99073 0.83454 1.21069 0.76593 0.80754 0.91832 1.90712 1.54308 1.64982 1.33576 1.21634 1.00567 0.98483 0.94251 1.17619 0.95032 0.91108 0.89835 0.95816 1.20929 1.06246 1.06242 1.18556 0.93857 1.25454 0.99160 0.95033 0.97737 1.70044 1.41591 1.10972 1.33094 0.85953 0.80950 0.77596 0.79506 1.21605 1.21096 1.18826 1.20575 0.94261 0.94980 0.94860 1.21015 0.98630 1.00703 0.94191 1.21367 1.00116 0.95693 0.97167 1.21267 0.98694 0.96360 1.00155 1.21282 0.99347 1.00003 0.93870 1.21096 1.01665 0.96031 0.97466 0.94825 0.90932 0.94584 0.89606 0.89827 0.94832 0.90739 0.75550 0.93100 0.91503 0.87081 0.89722 0.89350 0.93805 0.86976 0.84151 0.83764 0.84944 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.80 71.98 0.71 -3.35 16 2 C -0.11 -2.59 5.00 30.59 0.15 -2.43 16 3 C 0.13 3.74 2.54 45.00 0.11 3.85 16 4 H 0.07 2.68 6.92 -2.39 -0.02 2.66 16 5 C 0.08 1.71 6.84 71.99 0.49 2.20 16 6 O -0.57 -9.35 10.00 -148.98 -1.49 -10.84 16 7 N -0.61 -19.64 2.22 -822.57 -1.82 -21.46 16 8 C 0.07 1.81 8.90 127.77 1.14 2.95 16 9 C 0.51 21.80 7.42 87.66 0.65 22.45 16 10 O -0.56 -30.14 14.32 -3.03 -0.04 -30.19 16 11 C -0.11 -4.50 3.58 29.85 0.11 -4.40 16 12 C 0.08 4.25 1.69 -12.29 -0.02 4.22 16 13 H 0.02 1.42 6.94 -2.38 -0.02 1.40 16 14 C -0.48 -27.33 6.32 25.60 0.16 -27.17 16 15 H 0.04 2.44 7.82 -2.91 -0.02 2.42 16 16 C 0.02 1.47 5.45 84.66 0.46 1.94 16 17 N -0.92 -57.63 12.84 21.45 0.28 -57.36 16 18 Si 0.93 47.88 29.54 68.60 2.03 49.91 16 19 H -0.29 -15.10 7.11 99.48 0.71 -14.40 16 20 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 21 H -0.26 -12.84 7.11 99.48 0.71 -12.14 16 22 C -0.05 -2.12 4.77 -19.86 -0.09 -2.22 16 23 C -0.13 -5.12 8.87 22.27 0.20 -4.92 16 24 C -0.13 -4.17 10.05 22.27 0.22 -3.95 16 25 C -0.15 -4.62 10.05 22.27 0.22 -4.40 16 26 C -0.13 -4.51 10.05 22.27 0.22 -4.29 16 27 C -0.14 -6.31 9.67 22.27 0.22 -6.09 16 28 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.03 1.12 7.75 -2.39 -0.02 1.10 16 31 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.08 1.77 6.77 -2.39 -0.02 1.76 16 33 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.39 2.97 9.12 -74.05 -0.68 2.29 16 36 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 1.55 6.66 -2.39 -0.02 1.54 16 38 H 0.11 2.31 4.94 -2.39 -0.01 2.30 16 39 H 0.08 3.06 7.41 -2.39 -0.02 3.04 16 40 H 0.09 3.35 7.81 -2.39 -0.02 3.34 16 41 H 0.25 15.37 8.31 -92.70 -0.77 14.60 16 42 H 0.11 4.42 7.79 -2.91 -0.02 4.39 16 43 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 44 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 45 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 46 H 0.09 4.31 7.95 -2.91 -0.02 4.29 16 Total: -1.00 -76.43 370.48 4.19 -72.25 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 0.29 Total: 23.30 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: 4.95 Total: -25.60 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -1.55 Total: -78.82 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -1.53 Total: -41.03 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.91 kcal Total: -76.43 4.19 -72.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452281749.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.700 kcal (2) G-P(sol) polarization free energy of solvation -76.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds