Wall clock time and date at job start Fri Apr 10 2020 21:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47090 * 2 1 4 4 H 1.08994 * 109.47443 * 304.99866 * 3 2 1 5 5 C 1.53010 * 109.47049 * 185.00069 * 3 2 1 6 6 O 1.42896 * 109.46768 * 305.59674 * 5 3 2 7 7 N 1.46496 * 109.47366 * 65.00274 * 3 2 1 8 8 C 1.46501 * 120.00315 * 53.91369 * 7 3 2 9 9 C 1.34778 * 120.00286 * 233.92245 * 7 3 2 10 10 O 1.21283 * 119.99510 * 359.97438 * 9 7 3 11 11 C 1.50697 * 120.00565 * 179.97438 * 9 7 3 12 12 C 1.52994 * 109.47441 * 179.97438 * 11 9 7 13 13 H 1.09002 * 109.47505 * 305.00198 * 12 11 9 14 14 C 1.50703 * 109.47257 * 65.00087 * 12 11 9 15 15 H 1.07998 * 120.00084 * 235.98886 * 14 12 11 16 16 C 1.37877 * 119.99570 * 55.98759 * 14 12 11 17 17 N 1.31514 * 120.00014 * 2.25951 * 16 14 12 18 18 Si 1.86796 * 119.99847 * 182.26632 * 16 14 12 19 19 H 1.48503 * 109.47332 * 59.99580 * 18 16 14 20 20 H 1.48502 * 109.47361 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47373 * 299.99923 * 18 16 14 22 22 C 1.50702 * 109.47277 * 185.00349 * 12 11 9 23 23 C 1.38238 * 120.00043 * 151.23290 * 22 12 11 24 24 C 1.38235 * 119.99703 * 179.78986 * 23 22 12 25 25 C 1.38229 * 120.00261 * 0.43344 * 24 23 22 26 26 C 1.38234 * 119.99918 * 359.81838 * 25 24 23 27 27 C 1.38225 * 119.99984 * 331.50130 * 22 12 11 28 28 H 1.09001 * 109.47563 * 59.99918 * 1 2 3 29 29 H 1.09000 * 109.47569 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47282 * 300.00253 * 1 2 3 31 31 H 1.08999 * 109.47282 * 239.99747 * 2 1 3 32 32 H 1.09004 * 109.47102 * 120.00301 * 2 1 3 33 33 H 1.08997 * 109.46748 * 65.59461 * 5 3 2 34 34 H 1.09007 * 109.46657 * 185.59954 * 5 3 2 35 35 H 0.96698 * 113.99757 * 180.02562 * 6 5 3 36 36 H 1.08995 * 109.47714 * 274.93553 * 8 7 3 37 37 H 1.09000 * 109.46599 * 34.93833 * 8 7 3 38 38 H 1.08999 * 109.46934 * 154.92938 * 8 7 3 39 39 H 1.09005 * 109.46698 * 59.99749 * 11 9 7 40 40 H 1.08994 * 109.47267 * 300.00191 * 11 9 7 41 41 H 0.96999 * 119.99535 * 180.02562 * 17 16 14 42 42 H 1.08005 * 119.99739 * 359.97438 * 23 22 12 43 43 H 1.08004 * 119.99328 * 180.27618 * 24 23 22 44 44 H 1.07994 * 119.99906 * 179.83566 * 25 24 23 45 45 H 1.07998 * 120.00530 * 179.97438 * 26 25 24 46 46 H 1.08002 * 120.00426 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1257 6 8 4.1286 0.6291 0.9037 7 7 1.6525 2.0974 1.2518 8 6 2.0007 1.4861 2.5368 9 6 0.9754 3.2624 1.2214 10 8 0.6874 3.7687 0.1576 11 6 0.5763 3.9360 2.5090 12 6 -0.1743 5.2317 2.1955 13 1 0.4386 5.8593 1.5485 14 6 -1.4698 4.9056 1.4980 15 1 -1.6885 5.3406 0.5340 16 6 -2.3759 4.0519 2.0906 17 7 -2.1298 3.5572 3.2841 18 14 -3.9528 3.5978 1.1983 19 1 -3.6204 2.9322 -0.0869 20 1 -4.7505 2.6724 2.0426 21 1 -4.7412 4.8272 0.9295 22 6 -0.4657 5.9665 3.4785 23 6 -0.5720 7.3448 3.4769 24 6 -0.8436 8.0184 4.6531 25 6 -1.0000 7.3146 5.8324 26 6 -0.8885 5.9368 5.8350 27 6 -0.6212 5.2628 4.6580 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.8495 1.0474 -1.1002 34 1 3.9364 2.4642 -0.0260 35 1 5.0944 0.5843 0.8853 36 1 1.2411 0.7531 2.8083 37 1 2.9689 0.9923 2.4536 38 1 2.0515 2.2582 3.3045 39 1 1.4691 4.1653 3.0909 40 1 -0.0698 3.2709 3.0819 41 1 -2.7670 2.9563 3.7008 42 1 -0.4459 7.8950 2.5561 43 1 -0.9311 9.0949 4.6509 44 1 -1.2095 7.8411 6.7517 45 1 -1.0103 5.3868 6.7565 46 1 -0.5342 4.1863 4.6601 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452281750.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:36:57 Heat of formation + Delta-G solvation = -59.954064 kcal Electronic energy + Delta-G solvation = -26495.394089 eV Core-core repulsion = 22964.100707 eV Total energy + Delta-G solvation = -3531.293383 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.50001 -38.21688 -37.09467 -35.06226 -34.11814 -32.53919 -30.99773 -29.80003 -29.09891 -28.08813 -26.08774 -25.62750 -23.40824 -22.60388 -21.46182 -20.58023 -19.48957 -18.32923 -17.43700 -16.44638 -16.11422 -15.59327 -15.41534 -15.20115 -14.75991 -14.12959 -13.88043 -13.80109 -13.76146 -13.29168 -12.82283 -12.66971 -12.48281 -12.22902 -12.09053 -12.02640 -11.64214 -11.59158 -11.44956 -11.30624 -10.92870 -10.84915 -10.81206 -10.71605 -10.61482 -10.36488 -10.12995 -9.94701 -9.88933 -9.25523 -9.13128 -8.64232 -8.35040 -7.92886 -7.77310 -7.40708 -5.93101 -4.02707 2.52541 2.61347 3.35409 3.37814 3.44239 3.66489 3.75761 4.31088 4.46811 4.91910 5.00677 5.17841 5.29529 5.35036 5.42355 5.58797 5.65449 5.80336 5.83685 5.87451 5.93594 6.01963 6.03445 6.13066 6.18338 6.21562 6.36066 6.42693 6.48357 6.52151 6.64662 6.67446 6.75107 6.81139 7.14280 7.18318 7.26394 7.31742 7.52027 7.56974 7.58747 7.72874 7.97737 8.11205 8.21678 8.25863 8.39783 8.93497 9.25885 9.60273 11.01020 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014174 B = 0.005358 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.032021 B = 5224.837490 C = 6322.001840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.142 3.858 4 H 0.107 0.893 5 C 0.068 3.932 6 O -0.563 6.563 7 N -0.618 5.618 8 C 0.078 3.922 9 C 0.525 3.475 10 O -0.532 6.532 11 C -0.134 4.134 12 C 0.088 3.912 13 H 0.035 0.965 14 C -0.469 4.469 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.889 5.889 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.279 1.279 22 C -0.027 4.027 23 C -0.132 4.132 24 C -0.142 4.142 25 C -0.154 4.154 26 C -0.143 4.143 27 C -0.068 4.068 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.370 0.630 36 H 0.042 0.958 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.050 0.950 40 H 0.133 0.867 41 H 0.260 0.740 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.684 -5.426 -0.042 11.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C 0.037 3.963 4 H 0.125 0.875 5 C -0.011 4.011 6 O -0.369 6.369 7 N -0.354 5.354 8 C -0.065 4.065 9 C 0.316 3.684 10 O -0.407 6.407 11 C -0.174 4.174 12 C 0.068 3.932 13 H 0.054 0.946 14 C -0.506 4.506 15 H 0.076 0.924 16 C -0.139 4.139 17 N -0.529 5.529 18 Si 0.718 3.282 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.204 1.204 22 C -0.028 4.028 23 C -0.150 4.150 24 C -0.160 4.160 25 C -0.172 4.172 26 C -0.162 4.162 27 C -0.087 4.087 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.217 0.783 36 H 0.061 0.939 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.150 0.850 41 H 0.071 0.929 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.769 -5.335 -0.348 11.137 hybrid contribution -0.613 -0.233 -0.505 0.828 sum 9.156 -5.568 -0.853 10.751 Atomic orbital electron populations 1.21732 0.95405 1.00766 1.02902 1.21708 0.96277 0.95889 1.02177 1.21063 0.91329 0.94079 0.89807 0.87512 1.22686 0.94680 0.93868 0.89836 1.86507 1.24739 1.71795 1.53835 1.47929 1.58156 1.23682 1.05683 1.21858 1.01192 0.98456 0.84992 1.21211 0.75081 0.79393 0.92746 1.90583 1.53201 1.64262 1.32660 1.21944 0.99308 1.02148 0.94036 1.17642 0.95296 0.90389 0.89835 0.94632 1.20927 1.01186 1.25400 1.03111 0.92412 1.24861 0.98047 0.96234 0.94724 1.69642 1.36199 1.33042 1.14019 0.86677 0.83453 0.78331 0.79766 1.20376 1.21431 1.20449 1.20346 0.94160 0.92427 0.95827 1.20900 1.02491 0.94756 0.96858 1.20791 1.03469 0.98313 0.93459 1.20757 1.04808 0.94636 0.97047 1.21048 1.02963 0.94023 0.98138 1.21385 0.95685 1.00925 0.90688 0.92913 0.93385 0.91949 0.92023 0.91034 0.93322 0.93404 0.78319 0.93913 0.89587 0.91457 0.93188 0.84962 0.92937 0.87714 0.88140 0.88340 0.88112 0.84208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.80 37.16 0.36 -1.99 16 2 C -0.12 -1.67 4.99 -26.74 -0.13 -1.81 16 3 C 0.14 2.15 2.54 -67.93 -0.17 1.98 16 4 H 0.11 1.85 6.92 -51.93 -0.36 1.49 16 5 C 0.07 0.80 6.84 37.16 0.25 1.06 16 6 O -0.56 -5.90 10.00 -35.23 -0.35 -6.25 16 7 N -0.62 -10.77 2.21 -173.94 -0.39 -11.16 16 8 C 0.08 1.17 9.05 59.85 0.54 1.71 16 9 C 0.52 11.35 7.42 -10.99 -0.08 11.27 16 10 O -0.53 -13.23 14.32 5.55 0.08 -13.15 16 11 C -0.13 -2.94 2.58 -27.89 -0.07 -3.01 16 12 C 0.09 2.13 1.97 -92.92 -0.18 1.95 16 13 H 0.04 0.89 7.91 -51.93 -0.41 0.47 16 14 C -0.47 -12.70 7.27 -34.44 -0.25 -12.95 16 15 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 16 C 0.06 1.62 5.14 -17.82 -0.09 1.53 16 17 N -0.89 -22.85 7.94 55.43 0.44 -22.41 16 18 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 C -0.03 -0.62 4.68 -104.63 -0.49 -1.11 16 23 C -0.13 -2.85 9.71 -39.58 -0.38 -3.24 16 24 C -0.14 -2.77 10.05 -39.59 -0.40 -3.17 16 25 C -0.15 -2.94 10.05 -39.59 -0.40 -3.33 16 26 C -0.14 -2.88 10.05 -39.58 -0.40 -3.27 16 27 C -0.07 -1.52 7.45 -39.59 -0.29 -1.81 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 1.15 7.75 -51.93 -0.40 0.74 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.98 6.93 -51.93 -0.36 0.62 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 35 H 0.37 2.23 9.12 45.56 0.42 2.65 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 1.15 5.19 -51.93 -0.27 0.88 16 38 H 0.07 1.00 6.26 -51.93 -0.33 0.67 16 39 H 0.05 0.99 7.42 -51.93 -0.39 0.60 16 40 H 0.13 3.07 4.68 -51.93 -0.24 2.83 16 41 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 42 H 0.10 2.16 8.06 -52.48 -0.42 1.73 16 43 H 0.10 1.68 8.06 -52.48 -0.42 1.25 16 44 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 45 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 46 H 0.14 3.18 5.16 -52.49 -0.27 2.91 16 LS Contribution 359.46 15.07 5.42 5.42 Total: -1.00 -29.90 359.46 -8.39 -38.29 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -6.38 Total: 8.75 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -2.19 Total: -16.21 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.05 Total: -33.57 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.27 Total: -19.40 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.90 -8.39 -38.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452281750.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.661 kcal (2) G-P(sol) polarization free energy of solvation -29.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds