Wall clock time and date at job start Fri Apr 10 2020 21:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47090 * 2 1 4 4 H 1.08994 * 109.47443 * 304.99866 * 3 2 1 5 5 C 1.53010 * 109.47049 * 185.00069 * 3 2 1 6 6 O 1.42896 * 109.46768 * 305.59674 * 5 3 2 7 7 N 1.46496 * 109.47366 * 65.00274 * 3 2 1 8 8 C 1.46501 * 120.00315 * 53.91369 * 7 3 2 9 9 C 1.34778 * 120.00286 * 233.92245 * 7 3 2 10 10 O 1.21283 * 119.99510 * 359.97438 * 9 7 3 11 11 C 1.50697 * 120.00565 * 179.97438 * 9 7 3 12 12 C 1.52994 * 109.47441 * 179.97438 * 11 9 7 13 13 H 1.09002 * 109.47505 * 305.00198 * 12 11 9 14 14 C 1.50703 * 109.47257 * 65.00087 * 12 11 9 15 15 H 1.07998 * 120.00084 * 235.98886 * 14 12 11 16 16 C 1.37877 * 119.99570 * 55.98759 * 14 12 11 17 17 N 1.31514 * 120.00014 * 2.25951 * 16 14 12 18 18 Si 1.86796 * 119.99847 * 182.26632 * 16 14 12 19 19 H 1.48503 * 109.47332 * 59.99580 * 18 16 14 20 20 H 1.48502 * 109.47361 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47373 * 299.99923 * 18 16 14 22 22 C 1.50702 * 109.47277 * 185.00349 * 12 11 9 23 23 C 1.38238 * 120.00043 * 151.23290 * 22 12 11 24 24 C 1.38235 * 119.99703 * 179.78986 * 23 22 12 25 25 C 1.38229 * 120.00261 * 0.43344 * 24 23 22 26 26 C 1.38234 * 119.99918 * 359.81838 * 25 24 23 27 27 C 1.38225 * 119.99984 * 331.50130 * 22 12 11 28 28 H 1.09001 * 109.47563 * 59.99918 * 1 2 3 29 29 H 1.09000 * 109.47569 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47282 * 300.00253 * 1 2 3 31 31 H 1.08999 * 109.47282 * 239.99747 * 2 1 3 32 32 H 1.09004 * 109.47102 * 120.00301 * 2 1 3 33 33 H 1.08997 * 109.46748 * 65.59461 * 5 3 2 34 34 H 1.09007 * 109.46657 * 185.59954 * 5 3 2 35 35 H 0.96698 * 113.99757 * 180.02562 * 6 5 3 36 36 H 1.08995 * 109.47714 * 274.93553 * 8 7 3 37 37 H 1.09000 * 109.46599 * 34.93833 * 8 7 3 38 38 H 1.08999 * 109.46934 * 154.92938 * 8 7 3 39 39 H 1.09005 * 109.46698 * 59.99749 * 11 9 7 40 40 H 1.08994 * 109.47267 * 300.00191 * 11 9 7 41 41 H 0.96999 * 119.99535 * 180.02562 * 17 16 14 42 42 H 1.08005 * 119.99739 * 359.97438 * 23 22 12 43 43 H 1.08004 * 119.99328 * 180.27618 * 24 23 22 44 44 H 1.07994 * 119.99906 * 179.83566 * 25 24 23 45 45 H 1.07998 * 120.00530 * 179.97438 * 26 25 24 46 46 H 1.08002 * 120.00426 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1257 6 8 4.1286 0.6291 0.9037 7 7 1.6525 2.0974 1.2518 8 6 2.0007 1.4861 2.5368 9 6 0.9754 3.2624 1.2214 10 8 0.6874 3.7687 0.1576 11 6 0.5763 3.9360 2.5090 12 6 -0.1743 5.2317 2.1955 13 1 0.4386 5.8593 1.5485 14 6 -1.4698 4.9056 1.4980 15 1 -1.6885 5.3406 0.5340 16 6 -2.3759 4.0519 2.0906 17 7 -2.1298 3.5572 3.2841 18 14 -3.9528 3.5978 1.1983 19 1 -3.6204 2.9322 -0.0869 20 1 -4.7505 2.6724 2.0426 21 1 -4.7412 4.8272 0.9295 22 6 -0.4657 5.9665 3.4785 23 6 -0.5720 7.3448 3.4769 24 6 -0.8436 8.0184 4.6531 25 6 -1.0000 7.3146 5.8324 26 6 -0.8885 5.9368 5.8350 27 6 -0.6212 5.2628 4.6580 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.8495 1.0474 -1.1002 34 1 3.9364 2.4642 -0.0260 35 1 5.0944 0.5843 0.8853 36 1 1.2411 0.7531 2.8083 37 1 2.9689 0.9923 2.4536 38 1 2.0515 2.2582 3.3045 39 1 1.4691 4.1653 3.0909 40 1 -0.0698 3.2709 3.0819 41 1 -2.7670 2.9563 3.7008 42 1 -0.4459 7.8950 2.5561 43 1 -0.9311 9.0949 4.6509 44 1 -1.2095 7.8411 6.7517 45 1 -1.0103 5.3868 6.7565 46 1 -0.5342 4.1863 4.6601 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452281750.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:36:56 Heat of formation + Delta-G solvation = -77.078219 kcal Electronic energy + Delta-G solvation = -26496.136649 eV Core-core repulsion = 22964.100707 eV Total energy + Delta-G solvation = -3532.035942 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.02519 -39.79652 -38.35772 -36.30038 -35.91684 -33.90426 -32.88619 -31.41045 -30.42510 -29.58774 -27.77798 -27.14893 -24.72693 -24.20163 -23.05611 -22.03052 -21.07204 -19.76946 -18.60470 -18.18006 -17.70054 -17.13888 -16.89635 -16.69047 -16.44924 -15.51031 -15.42879 -15.25803 -15.17406 -14.75437 -14.53000 -14.12183 -13.79228 -13.60583 -13.54212 -13.35194 -13.29534 -13.23679 -13.08757 -12.85385 -12.71759 -12.68651 -12.25851 -12.18913 -11.90469 -11.84132 -11.81221 -11.68303 -11.06603 -11.03234 -10.86121 -10.53243 -10.17534 -9.39971 -9.34510 -9.11338 -7.93941 -6.09659 0.89020 1.00470 1.35042 1.36011 1.43650 2.03912 2.32043 2.44115 3.20515 3.37748 3.44147 3.74995 4.07711 4.17473 4.22819 4.34417 4.41818 4.45788 4.48767 4.52110 4.57892 4.66953 4.71387 4.75236 4.82269 4.84798 4.92092 4.98995 5.04960 5.08089 5.14491 5.17848 5.29675 5.37148 5.42493 5.54174 5.63624 5.68069 5.90470 5.90551 5.95452 6.10079 6.37101 6.43015 6.58279 6.69191 6.84364 6.97963 7.51983 7.61403 8.94943 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014174 B = 0.005358 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.032021 B = 5224.837490 C = 6322.001840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C 0.130 3.870 4 H 0.079 0.921 5 C 0.082 3.918 6 O -0.570 6.570 7 N -0.610 5.610 8 C 0.078 3.922 9 C 0.517 3.483 10 O -0.577 6.577 11 C -0.122 4.122 12 C 0.089 3.911 13 H 0.012 0.988 14 C -0.490 4.490 15 H 0.026 0.974 16 C 0.036 3.964 17 N -0.883 5.883 18 Si 0.926 3.074 19 H -0.290 1.290 20 H -0.275 1.275 21 H -0.282 1.282 22 C -0.052 4.052 23 C -0.152 4.152 24 C -0.140 4.140 25 C -0.148 4.148 26 C -0.146 4.146 27 C -0.081 4.081 28 H 0.035 0.965 29 H 0.070 0.930 30 H 0.027 0.973 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.037 0.963 35 H 0.394 0.606 36 H 0.042 0.958 37 H 0.110 0.890 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.122 0.878 41 H 0.261 0.739 42 H 0.102 0.898 43 H 0.132 0.868 44 H 0.137 0.863 45 H 0.127 0.873 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.701 -6.344 1.747 13.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C 0.026 3.974 4 H 0.097 0.903 5 C 0.003 3.997 6 O -0.379 6.379 7 N -0.344 5.344 8 C -0.064 4.064 9 C 0.308 3.692 10 O -0.456 6.456 11 C -0.162 4.162 12 C 0.070 3.930 13 H 0.030 0.970 14 C -0.528 4.528 15 H 0.044 0.956 16 C -0.164 4.164 17 N -0.522 5.522 18 Si 0.754 3.246 19 H -0.216 1.216 20 H -0.200 1.200 21 H -0.208 1.208 22 C -0.052 4.052 23 C -0.170 4.170 24 C -0.158 4.158 25 C -0.166 4.166 26 C -0.164 4.164 27 C -0.099 4.099 28 H 0.054 0.946 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.244 0.756 36 H 0.060 0.940 37 H 0.128 0.872 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.139 0.861 41 H 0.071 0.929 42 H 0.120 0.880 43 H 0.150 0.850 44 H 0.155 0.845 45 H 0.145 0.855 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.830 -6.294 1.476 12.613 hybrid contribution -0.874 0.056 -1.029 1.352 sum 9.956 -6.237 0.447 11.757 Atomic orbital electron populations 1.21710 0.97189 1.01369 1.00335 1.21653 0.94503 0.94905 1.03837 1.21289 0.94099 0.94348 0.87646 0.90323 1.22386 0.91841 0.93939 0.91552 1.86398 1.27017 1.71154 1.53354 1.47915 1.56519 1.22358 1.07643 1.22009 1.02321 0.98381 0.83709 1.21217 0.75413 0.80626 0.91946 1.90555 1.55349 1.65876 1.33809 1.21734 0.99416 1.00733 0.94307 1.17530 0.93956 0.91322 0.90234 0.97006 1.20886 1.02988 1.26496 1.02413 0.95574 1.25200 0.99468 0.96242 0.95467 1.69733 1.36196 1.32546 1.13715 0.86120 0.81708 0.77980 0.78786 1.21615 1.20014 1.20757 1.20302 0.96078 0.93264 0.95589 1.21072 1.03387 0.94470 0.98059 1.21152 1.01934 1.00013 0.92662 1.21196 1.02778 0.94331 0.98264 1.21364 1.01931 0.94933 0.98207 1.21323 0.96783 1.00532 0.91309 0.94595 0.91141 0.95364 0.89238 0.90207 0.90490 0.94431 0.75553 0.93961 0.87193 0.91466 0.91455 0.86053 0.92913 0.88005 0.84986 0.84549 0.85545 0.85286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.64 9.80 71.98 0.71 -3.93 16 2 C -0.11 -2.87 4.99 30.59 0.15 -2.71 16 3 C 0.13 3.90 2.54 44.99 0.11 4.02 16 4 H 0.08 2.83 6.92 -2.39 -0.02 2.82 16 5 C 0.08 1.76 6.84 71.99 0.49 2.26 16 6 O -0.57 -10.07 10.00 -148.98 -1.49 -11.56 16 7 N -0.61 -21.51 2.21 -822.61 -1.82 -23.33 16 8 C 0.08 2.26 9.05 127.77 1.16 3.41 16 9 C 0.52 23.39 7.42 87.66 0.65 24.04 16 10 O -0.58 -30.60 14.32 -3.04 -0.04 -30.64 16 11 C -0.12 -5.54 2.58 29.85 0.08 -5.46 16 12 C 0.09 4.55 1.97 -12.29 -0.02 4.53 16 13 H 0.01 0.62 7.91 -2.39 -0.02 0.61 16 14 C -0.49 -28.01 7.27 25.60 0.19 -27.83 16 15 H 0.03 1.60 7.81 -2.91 -0.02 1.58 16 16 C 0.04 1.95 5.14 84.65 0.43 2.39 16 17 N -0.88 -45.99 7.94 21.45 0.17 -45.82 16 18 Si 0.93 45.56 29.54 68.60 2.03 47.58 16 19 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 22 C -0.05 -2.45 4.68 -19.87 -0.09 -2.54 16 23 C -0.15 -6.60 9.71 22.27 0.22 -6.39 16 24 C -0.14 -5.13 10.05 22.27 0.22 -4.91 16 25 C -0.15 -5.12 10.05 22.27 0.22 -4.90 16 26 C -0.15 -5.53 10.05 22.27 0.22 -5.30 16 27 C -0.08 -3.57 7.45 22.27 0.17 -3.40 16 28 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.83 8.14 -2.39 -0.02 1.82 16 30 H 0.03 1.05 7.75 -2.39 -0.02 1.03 16 31 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.08 1.97 6.93 -2.38 -0.02 1.95 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.39 3.26 9.12 -74.06 -0.68 2.58 16 36 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.11 2.68 5.19 -2.39 -0.01 2.66 16 38 H 0.07 1.94 6.26 -2.39 -0.01 1.93 16 39 H 0.07 2.74 7.42 -2.38 -0.02 2.72 16 40 H 0.12 5.81 4.68 -2.39 -0.01 5.80 16 41 H 0.26 13.20 8.31 -92.71 -0.77 12.43 16 42 H 0.10 4.35 8.06 -2.91 -0.02 4.32 16 43 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 44 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 45 H 0.13 4.07 8.06 -2.91 -0.02 4.04 16 46 H 0.13 5.90 5.16 -2.91 -0.02 5.88 16 Total: -1.00 -67.73 359.46 4.05 -63.68 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.30 Total: 26.82 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: 4.91 Total: -26.73 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: -1.65 Total: -69.15 kcal Atomic # 8 Polarization: -40.67 SS G_CDS: -1.53 Total: -42.21 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -67.73 4.05 -63.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452281750.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.396 kcal (2) G-P(sol) polarization free energy of solvation -67.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds