Wall clock time and date at job start Fri Apr 10 2020 21:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46970 * 2 1 4 4 H 1.09000 * 109.46751 * 305.00047 * 3 2 1 5 5 C 1.53000 * 109.46536 * 185.00349 * 3 2 1 6 6 O 1.42899 * 109.47295 * 305.73948 * 5 3 2 7 7 N 1.46498 * 109.47237 * 65.00146 * 3 2 1 8 8 C 1.46497 * 120.00068 * 53.56817 * 7 3 2 9 9 C 1.34778 * 119.99445 * 233.56908 * 7 3 2 10 10 O 1.21280 * 120.00549 * 359.97438 * 9 7 3 11 11 C 1.50706 * 119.99351 * 180.02562 * 9 7 3 12 12 C 1.53006 * 109.46624 * 180.02562 * 11 9 7 13 13 H 1.08994 * 109.47276 * 54.99420 * 12 11 9 14 14 C 1.50700 * 109.47003 * 294.99692 * 12 11 9 15 15 H 1.08007 * 120.00214 * 325.21212 * 14 12 11 16 16 C 1.37876 * 120.00015 * 145.21682 * 14 12 11 17 17 N 1.31508 * 119.99942 * 5.27723 * 16 14 12 18 18 Si 1.86799 * 119.99868 * 185.28365 * 16 14 12 19 19 H 1.48499 * 109.47468 * 59.99900 * 18 16 14 20 20 H 1.48506 * 109.46965 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47186 * 299.99377 * 18 16 14 22 22 C 1.50706 * 109.46875 * 175.00137 * 12 11 9 23 23 C 1.38232 * 120.00279 * 64.41031 * 22 12 11 24 24 C 1.38230 * 120.00254 * 179.79064 * 23 22 12 25 25 C 1.38240 * 119.99512 * 0.43954 * 24 23 22 26 26 C 1.38229 * 120.00038 * 359.81123 * 25 24 23 27 27 C 1.38232 * 120.00371 * 359.97438 * 26 25 24 28 28 H 1.08999 * 109.47209 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47147 * 299.99917 * 1 2 3 30 30 H 1.08997 * 109.47589 * 59.99912 * 1 2 3 31 31 H 1.08993 * 109.46819 * 239.99871 * 2 1 3 32 32 H 1.09001 * 109.46958 * 119.99743 * 2 1 3 33 33 H 1.08999 * 109.47311 * 65.74293 * 5 3 2 34 34 H 1.09007 * 109.46828 * 185.74398 * 5 3 2 35 35 H 0.96700 * 114.00638 * 180.02562 * 6 5 3 36 36 H 1.08999 * 109.47268 * 264.74071 * 8 7 3 37 37 H 1.09001 * 109.47455 * 24.74539 * 8 7 3 38 38 H 1.09001 * 109.46695 * 144.74509 * 8 7 3 39 39 H 1.08996 * 109.47314 * 299.99256 * 11 9 7 40 40 H 1.08997 * 109.47400 * 59.99868 * 11 9 7 41 41 H 0.97003 * 120.00273 * 180.02562 * 17 16 14 42 42 H 1.08008 * 119.99617 * 359.97438 * 23 22 12 43 43 H 1.07993 * 120.00533 * 180.27854 * 24 23 22 44 44 H 1.08001 * 119.99883 * 179.83960 * 25 24 23 45 45 H 1.08005 * 119.99930 * 179.97438 * 26 25 24 46 46 H 1.08000 * 120.00396 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1258 6 8 4.1285 0.6264 0.9015 7 7 1.6525 2.0975 1.2518 8 6 1.9941 1.4823 2.5367 9 6 0.9816 3.2661 1.2212 10 8 0.6992 3.7756 0.1575 11 6 0.5835 3.9402 2.5090 12 6 -0.1609 5.2396 2.1954 13 1 -1.0035 5.0261 1.5379 14 6 0.7762 6.2034 1.5140 15 1 1.8204 6.2271 1.7891 16 6 0.3005 7.0550 0.5396 17 7 -0.9874 7.1001 0.2773 18 14 1.4855 8.1445 -0.4081 19 1 2.4731 7.2970 -1.1233 20 1 0.7290 8.9599 -1.3922 21 1 2.1962 9.0425 0.5372 22 6 -0.6658 5.8511 3.4769 23 6 0.2305 6.2923 4.4324 24 6 -0.2326 6.8571 5.6059 25 6 -1.5922 6.9724 5.8280 26 6 -2.4885 6.5265 4.8748 27 6 -2.0253 5.9657 3.6993 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8494 1.0499 -1.1013 34 1 3.9367 2.4638 -0.0235 35 1 5.0943 0.5814 0.8830 36 1 1.1500 0.8916 2.8925 37 1 2.8626 0.8358 2.4106 38 1 2.2239 2.2619 3.2630 39 1 -0.0674 3.2778 3.0797 40 1 1.4761 4.1641 3.0930 41 1 -1.3220 7.6989 -0.4085 42 1 1.2926 6.1985 4.2606 43 1 0.4676 7.2060 6.3505 44 1 -1.9541 7.4113 6.7461 45 1 -3.5507 6.6162 5.0485 46 1 -2.7256 5.6169 2.9547 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452281751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:37:00 Heat of formation + Delta-G solvation = -87.067135 kcal Electronic energy + Delta-G solvation = -26042.566670 eV Core-core repulsion = 22510.097576 eV Total energy + Delta-G solvation = -3532.469094 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.03825 -39.84267 -38.39019 -36.27687 -35.72276 -33.99693 -33.22555 -31.50252 -30.56972 -29.67546 -27.63379 -27.08804 -24.80781 -24.22222 -23.14677 -22.08909 -21.04021 -19.78185 -18.61974 -18.44542 -17.74365 -17.15939 -16.87154 -16.65364 -16.39748 -15.71266 -15.51139 -15.19650 -15.12668 -14.97499 -14.25121 -14.13243 -13.95810 -13.80636 -13.62549 -13.49441 -13.35790 -13.28341 -13.15154 -12.83201 -12.74430 -12.53573 -12.51105 -12.17393 -11.88703 -11.81711 -11.78839 -11.67356 -11.29364 -10.95041 -10.89310 -10.55069 -10.25106 -9.54280 -9.37921 -9.18600 -8.03692 -6.06270 0.77855 0.84387 1.33973 1.38682 1.42837 1.98896 2.25077 2.45758 3.18864 3.36060 3.40596 3.73621 4.06902 4.10212 4.24087 4.25819 4.35818 4.41193 4.43899 4.48970 4.53672 4.55326 4.62982 4.69849 4.72844 4.80234 4.84380 4.92897 4.98517 5.03694 5.05484 5.16512 5.21970 5.33051 5.37473 5.41914 5.52803 5.63435 5.78090 5.83673 5.87319 5.96094 6.17687 6.42348 6.46971 6.65616 6.93393 7.01068 7.55827 7.59941 9.06108 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012093 B = 0.005106 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.778857 B = 5482.325918 C = 6638.347628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C 0.131 3.869 4 H 0.075 0.925 5 C 0.079 3.921 6 O -0.568 6.568 7 N -0.611 5.611 8 C 0.075 3.925 9 C 0.508 3.492 10 O -0.559 6.559 11 C -0.109 4.109 12 C 0.084 3.916 13 H 0.022 0.978 14 C -0.484 4.484 15 H 0.044 0.956 16 C 0.023 3.977 17 N -0.918 5.918 18 Si 0.935 3.065 19 H -0.282 1.282 20 H -0.289 1.289 21 H -0.266 1.266 22 C -0.046 4.046 23 C -0.127 4.127 24 C -0.125 4.125 25 C -0.147 4.147 26 C -0.127 4.127 27 C -0.145 4.145 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.030 0.970 35 H 0.394 0.606 36 H 0.054 0.946 37 H 0.109 0.891 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.253 0.747 42 H 0.113 0.887 43 H 0.141 0.859 44 H 0.145 0.855 45 H 0.132 0.868 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.549 -13.646 7.302 17.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C 0.028 3.972 4 H 0.093 0.907 5 C 0.000 4.000 6 O -0.377 6.377 7 N -0.346 5.346 8 C -0.067 4.067 9 C 0.298 3.702 10 O -0.436 6.436 11 C -0.149 4.149 12 C 0.064 3.936 13 H 0.041 0.959 14 C -0.522 4.522 15 H 0.063 0.937 16 C -0.175 4.175 17 N -0.557 5.557 18 Si 0.763 3.237 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.047 4.047 23 C -0.145 4.145 24 C -0.143 4.143 25 C -0.165 4.165 26 C -0.145 4.145 27 C -0.163 4.163 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.048 0.952 35 H 0.244 0.756 36 H 0.072 0.928 37 H 0.127 0.873 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.062 0.938 42 H 0.131 0.869 43 H 0.159 0.841 44 H 0.162 0.838 45 H 0.150 0.850 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.653 -13.360 6.771 16.389 hybrid contribution 0.775 1.110 -1.372 1.927 sum 7.428 -12.250 5.400 15.310 Atomic orbital electron populations 1.21717 0.96492 1.01722 1.00614 1.21666 0.95211 0.94186 1.03879 1.21263 0.93635 0.94683 0.87658 0.90665 1.22383 0.92506 0.93575 0.91560 1.86355 1.27004 1.70832 1.53499 1.47957 1.56960 1.21861 1.07778 1.22050 1.02189 0.99000 0.83463 1.21074 0.77015 0.80315 0.91839 1.90710 1.55106 1.64144 1.33592 1.21636 1.01448 0.97584 0.94256 1.17614 0.95327 0.90766 0.89857 0.95936 1.20908 0.93789 1.18525 1.18953 0.93738 1.25486 0.95911 0.98442 0.97697 1.70046 1.13666 1.38965 1.33054 0.85971 0.79671 0.79018 0.79090 1.20802 1.21451 1.19146 1.20578 0.93173 0.96003 0.94912 1.21018 0.99303 1.00132 0.94075 1.21368 0.96332 0.99371 0.97253 1.21265 0.93178 1.02002 1.00053 1.21282 1.00329 0.99098 0.93819 1.21095 0.95447 1.02273 0.97490 0.90849 0.94508 0.94565 0.89657 0.89873 0.90793 0.95204 0.75591 0.92776 0.87279 0.91618 0.89943 0.89120 0.93805 0.86855 0.84098 0.83766 0.84992 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.80 71.98 0.71 -3.05 16 2 C -0.11 -2.51 4.98 30.60 0.15 -2.36 16 3 C 0.13 3.77 2.54 44.99 0.11 3.89 16 4 H 0.08 2.69 6.93 -2.39 -0.02 2.67 16 5 C 0.08 1.76 6.84 71.98 0.49 2.26 16 6 O -0.57 -9.81 10.03 -148.98 -1.49 -11.31 16 7 N -0.61 -19.69 2.22 -822.59 -1.82 -21.51 16 8 C 0.07 1.81 8.91 127.77 1.14 2.95 16 9 C 0.51 21.83 7.42 87.66 0.65 22.48 16 10 O -0.56 -30.15 14.32 -3.03 -0.04 -30.20 16 11 C -0.11 -4.50 3.58 29.85 0.11 -4.40 16 12 C 0.08 4.27 1.69 -12.28 -0.02 4.24 16 13 H 0.02 1.35 6.95 -2.39 -0.02 1.34 16 14 C -0.48 -27.34 6.33 25.60 0.16 -27.17 16 15 H 0.04 2.48 7.82 -2.91 -0.02 2.45 16 16 C 0.02 1.38 5.45 84.66 0.46 1.84 16 17 N -0.92 -57.67 12.85 21.45 0.28 -57.39 16 18 Si 0.94 47.53 29.54 68.60 2.03 49.55 16 19 H -0.28 -14.34 7.11 99.48 0.71 -13.64 16 20 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 21 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 22 C -0.05 -2.12 4.77 -19.86 -0.09 -2.22 16 23 C -0.13 -5.10 8.87 22.27 0.20 -4.90 16 24 C -0.13 -4.16 10.05 22.27 0.22 -3.93 16 25 C -0.15 -4.65 10.05 22.27 0.22 -4.42 16 26 C -0.13 -4.55 10.05 22.27 0.22 -4.33 16 27 C -0.14 -6.37 9.67 22.27 0.22 -6.15 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.04 1.06 7.75 -2.38 -0.02 1.04 16 30 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 1.73 6.74 -2.39 -0.02 1.71 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.03 0.79 8.14 -2.38 -0.02 0.78 16 35 H 0.39 3.37 9.12 -74.06 -0.68 2.69 16 36 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.11 2.30 4.98 -2.39 -0.01 2.29 16 38 H 0.07 1.56 6.66 -2.39 -0.02 1.54 16 39 H 0.08 3.02 8.11 -2.39 -0.02 3.00 16 40 H 0.09 3.40 7.11 -2.39 -0.02 3.39 16 41 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 42 H 0.11 4.41 7.79 -2.91 -0.02 4.39 16 43 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 44 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 45 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 46 H 0.09 4.31 7.95 -2.91 -0.02 4.29 16 Total: -1.00 -76.17 370.50 4.18 -71.99 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.29 Total: 24.13 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: 4.95 Total: -25.27 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -1.55 Total: -78.90 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -1.54 Total: -41.50 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.55 kcal Total: -76.17 4.18 -71.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452281751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.077 kcal (2) G-P(sol) polarization free energy of solvation -76.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds