Wall clock time and date at job start Fri Apr 10 2020 21:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47146 * 2 1 4 4 H 1.08998 * 109.47209 * 54.99770 * 3 2 1 5 5 N 1.46501 * 109.46877 * 294.99737 * 3 2 1 6 6 C 1.34786 * 119.99812 * 84.99980 * 5 3 2 7 7 O 1.21280 * 119.99735 * 0.02562 * 6 5 3 8 8 C 1.50698 * 119.99776 * 179.97438 * 6 5 3 9 9 C 1.52998 * 109.46931 * 179.97438 * 8 6 5 10 10 H 1.08995 * 109.47584 * 305.00268 * 9 8 6 11 11 C 1.50710 * 109.46678 * 65.00374 * 9 8 6 12 12 H 1.07998 * 120.00340 * 29.58084 * 11 9 8 13 13 C 1.37880 * 119.99869 * 209.58131 * 11 9 8 14 14 N 1.31516 * 119.99815 * 4.94052 * 13 11 9 15 15 Si 1.86795 * 120.00179 * 184.94315 * 13 11 9 16 16 H 1.48506 * 109.47007 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47087 * 119.99940 * 15 13 11 18 18 H 1.48496 * 109.47348 * 240.00283 * 15 13 11 19 19 C 1.50696 * 109.47402 * 184.99969 * 9 8 6 20 20 C 1.38242 * 119.99902 * 296.77477 * 19 9 8 21 21 C 1.38236 * 119.99842 * 179.78433 * 20 19 9 22 22 C 1.38236 * 119.99938 * 0.43885 * 21 20 19 23 23 C 1.38240 * 120.00099 * 359.81801 * 22 21 20 24 24 C 1.38229 * 120.00180 * 117.04084 * 19 9 8 25 25 C 1.52996 * 109.47038 * 174.99918 * 3 2 1 26 26 H 1.08994 * 109.47385 * 299.99559 * 25 3 2 27 27 C 1.53003 * 109.46912 * 179.97438 * 25 3 2 28 28 O 1.42908 * 109.47071 * 60.00013 * 25 3 2 29 29 H 1.09003 * 109.47072 * 300.00059 * 1 2 3 30 30 H 1.08991 * 109.47409 * 60.00166 * 1 2 3 31 31 H 1.08997 * 109.46900 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47352 * 239.99468 * 2 1 3 33 33 H 1.09004 * 109.47266 * 119.99529 * 2 1 3 34 34 H 0.97003 * 120.00210 * 265.00209 * 5 3 2 35 35 H 1.09002 * 109.47190 * 299.99971 * 8 6 5 36 36 H 1.09001 * 109.47321 * 60.00405 * 8 6 5 37 37 H 0.96999 * 120.00002 * 179.97438 * 14 13 11 38 38 H 1.07999 * 120.00007 * 359.97438 * 20 19 9 39 39 H 1.07997 * 120.00252 * 180.27310 * 21 20 19 40 40 H 1.07999 * 119.99894 * 179.83404 * 22 21 20 41 41 H 1.07993 * 120.00049 * 179.97438 * 23 22 21 42 42 H 1.08003 * 120.00033 * 359.97438 * 24 19 9 43 43 H 1.08999 * 109.47303 * 179.97438 * 27 25 3 44 44 H 1.08995 * 109.47660 * 300.00013 * 27 25 3 45 45 H 1.08998 * 109.46828 * 60.00162 * 27 25 3 46 46 H 0.96697 * 113.99394 * 179.97438 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6525 2.0974 -1.2519 6 6 0.4351 2.6643 -1.3670 7 8 -0.3393 2.6326 -0.4342 8 6 0.0367 3.3385 -2.6546 9 6 -1.3826 3.8941 -2.5213 10 1 -2.0595 3.0939 -2.2222 11 6 -1.4001 4.9827 -1.4792 12 1 -0.5173 5.5808 -1.3082 13 6 -2.5432 5.2151 -0.7441 14 7 -3.5859 4.4256 -0.8827 15 14 -2.6110 6.6512 0.4484 16 1 -1.3180 7.3812 0.4182 17 1 -3.7077 7.5713 0.0535 18 1 -2.8611 6.1433 1.8212 19 6 -1.8273 4.4593 -3.8456 20 6 -1.1580 5.5357 -4.3974 21 6 -1.5631 6.0514 -5.6144 22 6 -2.6431 5.4964 -6.2751 23 6 -3.3157 4.4234 -5.7208 24 6 -2.9078 3.9050 -4.5059 25 6 3.5648 1.4443 0.1257 26 1 3.8532 0.9571 1.0571 27 6 4.0748 2.8868 0.1251 28 8 4.1346 0.7376 -0.9779 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.2720 2.1231 -1.9979 35 1 0.7281 4.1540 -2.8668 36 1 0.0680 2.6144 -3.4687 37 1 -4.3900 4.5889 -0.3653 38 1 -0.3168 5.9718 -3.8793 39 1 -1.0375 6.8895 -6.0476 40 1 -2.9612 5.9010 -7.2246 41 1 -4.1596 3.9902 -6.2368 42 1 -3.4331 3.0665 -4.0730 43 1 5.1611 2.8882 0.2151 44 1 3.7866 3.3738 -0.8064 45 1 3.6402 3.4262 0.9667 46 1 5.1007 0.6990 -0.9636 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456277860.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:37:06 Heat of formation + Delta-G solvation = -78.383894 kcal Electronic energy + Delta-G solvation = -25888.507576 eV Core-core repulsion = 22356.415016 eV Total energy + Delta-G solvation = -3532.092560 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.55021 -38.36380 -37.45862 -34.77115 -33.76314 -31.95336 -31.29143 -30.73964 -29.97694 -28.67475 -26.48728 -25.23769 -22.79139 -21.85371 -21.60964 -20.70947 -19.94959 -19.18135 -17.36834 -16.62225 -16.18066 -15.86230 -15.47251 -15.00833 -14.49799 -14.29632 -14.13063 -14.04753 -13.75935 -13.27178 -12.90723 -12.78773 -12.48739 -12.39220 -12.31115 -12.07727 -11.92239 -11.66854 -11.56798 -11.50838 -11.05276 -10.87517 -10.66908 -10.57697 -10.50357 -10.43185 -10.22992 -10.12171 -9.97947 -9.38286 -9.04628 -8.69209 -8.36915 -8.23962 -8.01559 -7.58204 -5.88567 -3.87180 2.31830 2.37661 3.38492 3.45628 3.47520 3.66591 3.80147 4.17987 4.54697 4.66327 4.78338 4.90583 5.10390 5.43704 5.46175 5.49612 5.55024 5.67473 5.68703 5.76101 5.77947 5.87384 5.92546 6.06372 6.13583 6.17535 6.22460 6.28452 6.32330 6.34256 6.44318 6.56913 6.58848 6.85519 6.89756 6.95473 7.08182 7.11884 7.33911 7.49066 7.49535 7.58042 7.93168 7.98321 8.10192 8.28384 8.44142 9.12070 9.24174 9.73343 11.21580 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012273 B = 0.004799 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.906051 B = 5833.073904 C = 6774.295450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C 0.156 3.844 4 H 0.095 0.905 5 N -0.738 5.738 6 C 0.510 3.490 7 O -0.490 6.490 8 C -0.122 4.122 9 C 0.079 3.921 10 H 0.073 0.927 11 C -0.487 4.487 12 H 0.050 0.950 13 C 0.077 3.923 14 N -0.880 5.880 15 Si 0.883 3.117 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.286 1.286 19 C -0.022 4.022 20 C -0.115 4.115 21 C -0.133 4.133 22 C -0.156 4.156 23 C -0.129 4.129 24 C -0.119 4.119 25 C 0.095 3.905 26 H 0.062 0.938 27 C -0.185 4.185 28 O -0.563 6.563 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.395 0.605 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.257 0.743 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.114 0.886 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.514 -5.711 -2.851 14.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C 0.051 3.949 4 H 0.113 0.887 5 N -0.393 5.393 6 C 0.297 3.703 7 O -0.362 6.362 8 C -0.162 4.162 9 C 0.060 3.940 10 H 0.091 0.909 11 C -0.525 4.525 12 H 0.068 0.932 13 C -0.126 4.126 14 N -0.518 5.518 15 Si 0.712 3.288 16 H -0.200 1.200 17 H -0.213 1.213 18 H -0.212 1.212 19 C -0.023 4.023 20 C -0.133 4.133 21 C -0.151 4.151 22 C -0.174 4.174 23 C -0.147 4.147 24 C -0.137 4.137 25 C 0.035 3.965 26 H 0.080 0.920 27 C -0.242 4.242 28 O -0.368 6.368 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.229 0.771 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.131 0.869 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.132 0.868 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 12.077 -5.812 -2.224 13.585 hybrid contribution 0.724 1.087 0.555 1.419 sum 12.801 -4.724 -1.669 13.746 Atomic orbital electron populations 1.21815 0.94569 1.00020 1.03869 1.21856 0.97048 0.96015 1.01593 1.20934 0.90561 0.93879 0.89568 0.88739 1.46136 1.17796 1.59718 1.15696 1.20818 0.80656 0.77919 0.90902 1.90768 1.50140 1.55516 1.39731 1.21760 1.01806 0.99123 0.93544 1.17829 0.89909 0.97500 0.88718 0.90930 1.20698 0.97646 1.16352 1.17761 0.93205 1.24802 0.96051 0.95678 0.96093 1.69914 1.03963 1.36584 1.41290 0.86682 0.77766 0.82992 0.81351 1.20000 1.21296 1.21205 1.20780 0.93163 0.93581 0.94759 1.20954 1.00751 0.96882 0.94679 1.20974 0.97827 0.99938 0.96328 1.20793 0.98009 0.98533 1.00059 1.20984 0.99613 0.97451 0.96625 1.21099 0.97654 1.00650 0.94317 1.22140 0.93601 0.91459 0.89271 0.92002 1.22479 1.00622 0.97292 1.03844 1.86542 1.24861 1.77469 1.47911 0.92211 0.91716 0.94274 0.91584 0.92411 0.77096 0.90793 0.91869 0.93292 0.86899 0.87705 0.87841 0.87671 0.86828 0.92675 0.91236 0.91393 0.77895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 8.52 37.16 0.32 -2.09 16 2 C -0.13 -1.74 5.39 -26.73 -0.14 -1.88 16 3 C 0.16 2.16 2.09 -67.93 -0.14 2.02 16 4 H 0.09 1.50 7.58 -51.93 -0.39 1.11 16 5 N -0.74 -11.18 4.31 -53.81 -0.23 -11.42 16 6 C 0.51 10.00 6.15 -10.98 -0.07 9.94 16 7 O -0.49 -11.74 12.12 5.56 0.07 -11.67 16 8 C -0.12 -2.38 4.94 -27.89 -0.14 -2.52 16 9 C 0.08 1.90 1.69 -92.92 -0.16 1.74 16 10 H 0.07 2.00 6.95 -51.93 -0.36 1.64 16 11 C -0.49 -13.06 6.38 -34.43 -0.22 -13.28 16 12 H 0.05 1.34 7.82 -52.49 -0.41 0.93 16 13 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 14 N -0.88 -25.96 12.85 55.43 0.71 -25.25 16 15 Si 0.88 22.25 29.54 -169.99 -5.02 17.23 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 17 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 C -0.02 -0.49 4.77 -104.63 -0.50 -0.99 16 20 C -0.11 -2.33 8.86 -39.58 -0.35 -2.68 16 21 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 22 C -0.16 -2.75 10.05 -39.58 -0.40 -3.15 16 23 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16 24 C -0.12 -2.55 9.67 -39.59 -0.38 -2.93 16 25 C 0.09 0.96 3.33 -26.73 -0.09 0.88 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 C -0.18 -1.80 9.38 37.16 0.35 -1.46 16 28 O -0.56 -5.35 12.25 -35.23 -0.43 -5.79 16 29 H 0.06 1.08 7.85 -51.93 -0.41 0.67 16 30 H 0.06 1.24 5.65 -51.93 -0.29 0.95 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.91 7.83 -51.93 -0.41 0.51 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.40 5.25 7.99 -40.82 -0.33 4.93 16 35 H 0.07 1.34 7.76 -51.93 -0.40 0.94 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.11 2.22 7.75 -52.49 -0.41 1.81 16 39 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.10 1.53 8.06 -52.49 -0.42 1.10 16 41 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.11 2.46 7.95 -52.48 -0.42 2.04 16 43 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.76 7.44 -51.93 -0.39 0.37 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.37 1.98 9.08 45.56 0.41 2.40 16 LS Contribution 372.12 15.07 5.61 5.61 Total: -1.00 -32.05 372.12 -8.85 -40.90 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -6.74 Total: 10.33 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -2.82 Total: -19.94 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.48 Total: -36.66 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.36 Total: -17.46 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.05 -8.85 -40.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456277860.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.484 kcal (2) G-P(sol) polarization free energy of solvation -32.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds