Wall clock time and date at job start Fri Apr 10 2020 21:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47146 * 2 1 4 4 H 1.08998 * 109.47209 * 54.99770 * 3 2 1 5 5 N 1.46501 * 109.46877 * 294.99737 * 3 2 1 6 6 C 1.34786 * 119.99812 * 84.99980 * 5 3 2 7 7 O 1.21280 * 119.99735 * 0.02562 * 6 5 3 8 8 C 1.50698 * 119.99776 * 179.97438 * 6 5 3 9 9 C 1.52998 * 109.46931 * 179.97438 * 8 6 5 10 10 H 1.08995 * 109.47584 * 305.00268 * 9 8 6 11 11 C 1.50710 * 109.46678 * 65.00374 * 9 8 6 12 12 H 1.07998 * 120.00340 * 29.58084 * 11 9 8 13 13 C 1.37880 * 119.99869 * 209.58131 * 11 9 8 14 14 N 1.31516 * 119.99815 * 4.94052 * 13 11 9 15 15 Si 1.86795 * 120.00179 * 184.94315 * 13 11 9 16 16 H 1.48506 * 109.47007 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47087 * 119.99940 * 15 13 11 18 18 H 1.48496 * 109.47348 * 240.00283 * 15 13 11 19 19 C 1.50696 * 109.47402 * 184.99969 * 9 8 6 20 20 C 1.38242 * 119.99902 * 296.77477 * 19 9 8 21 21 C 1.38236 * 119.99842 * 179.78433 * 20 19 9 22 22 C 1.38236 * 119.99938 * 0.43885 * 21 20 19 23 23 C 1.38240 * 120.00099 * 359.81801 * 22 21 20 24 24 C 1.38229 * 120.00180 * 117.04084 * 19 9 8 25 25 C 1.52996 * 109.47038 * 174.99918 * 3 2 1 26 26 H 1.08994 * 109.47385 * 299.99559 * 25 3 2 27 27 C 1.53003 * 109.46912 * 179.97438 * 25 3 2 28 28 O 1.42908 * 109.47071 * 60.00013 * 25 3 2 29 29 H 1.09003 * 109.47072 * 300.00059 * 1 2 3 30 30 H 1.08991 * 109.47409 * 60.00166 * 1 2 3 31 31 H 1.08997 * 109.46900 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47352 * 239.99468 * 2 1 3 33 33 H 1.09004 * 109.47266 * 119.99529 * 2 1 3 34 34 H 0.97003 * 120.00210 * 265.00209 * 5 3 2 35 35 H 1.09002 * 109.47190 * 299.99971 * 8 6 5 36 36 H 1.09001 * 109.47321 * 60.00405 * 8 6 5 37 37 H 0.96999 * 120.00002 * 179.97438 * 14 13 11 38 38 H 1.07999 * 120.00007 * 359.97438 * 20 19 9 39 39 H 1.07997 * 120.00252 * 180.27310 * 21 20 19 40 40 H 1.07999 * 119.99894 * 179.83404 * 22 21 20 41 41 H 1.07993 * 120.00049 * 179.97438 * 23 22 21 42 42 H 1.08003 * 120.00033 * 359.97438 * 24 19 9 43 43 H 1.08999 * 109.47303 * 179.97438 * 27 25 3 44 44 H 1.08995 * 109.47660 * 300.00013 * 27 25 3 45 45 H 1.08998 * 109.46828 * 60.00162 * 27 25 3 46 46 H 0.96697 * 113.99394 * 179.97438 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6525 2.0974 -1.2519 6 6 0.4351 2.6643 -1.3670 7 8 -0.3393 2.6326 -0.4342 8 6 0.0367 3.3385 -2.6546 9 6 -1.3826 3.8941 -2.5213 10 1 -2.0595 3.0939 -2.2222 11 6 -1.4001 4.9827 -1.4792 12 1 -0.5173 5.5808 -1.3082 13 6 -2.5432 5.2151 -0.7441 14 7 -3.5859 4.4256 -0.8827 15 14 -2.6110 6.6512 0.4484 16 1 -1.3180 7.3812 0.4182 17 1 -3.7077 7.5713 0.0535 18 1 -2.8611 6.1433 1.8212 19 6 -1.8273 4.4593 -3.8456 20 6 -1.1580 5.5357 -4.3974 21 6 -1.5631 6.0514 -5.6144 22 6 -2.6431 5.4964 -6.2751 23 6 -3.3157 4.4234 -5.7208 24 6 -2.9078 3.9050 -4.5059 25 6 3.5648 1.4443 0.1257 26 1 3.8532 0.9571 1.0571 27 6 4.0748 2.8868 0.1251 28 8 4.1346 0.7376 -0.9779 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.2720 2.1231 -1.9979 35 1 0.7281 4.1540 -2.8668 36 1 0.0680 2.6144 -3.4687 37 1 -4.3900 4.5889 -0.3653 38 1 -0.3168 5.9718 -3.8793 39 1 -1.0375 6.8895 -6.0476 40 1 -2.9612 5.9010 -7.2246 41 1 -4.1596 3.9902 -6.2368 42 1 -3.4331 3.0665 -4.0730 43 1 5.1611 2.8882 0.2151 44 1 3.7866 3.3738 -0.8064 45 1 3.6402 3.4262 0.9667 46 1 5.1007 0.6990 -0.9636 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456277860.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:37:05 Heat of formation + Delta-G solvation = -99.644961 kcal Electronic energy + Delta-G solvation = -25889.429525 eV Core-core repulsion = 22356.415016 eV Total energy + Delta-G solvation = -3533.014509 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.95115 -39.85102 -38.59515 -36.07778 -35.43529 -33.57177 -32.99283 -31.68159 -31.49727 -30.19516 -27.88371 -26.95348 -24.50246 -23.14475 -22.87726 -22.01960 -21.28015 -20.82056 -18.51500 -18.30758 -17.76977 -17.18565 -16.78351 -16.47002 -16.31452 -15.66813 -15.48324 -15.33501 -15.03567 -14.85420 -14.34749 -14.09693 -13.95797 -13.79347 -13.60510 -13.49113 -13.23035 -13.19423 -13.11367 -12.87259 -12.51693 -12.49514 -12.44315 -12.29156 -11.84352 -11.76012 -11.66672 -11.51225 -11.26753 -10.95281 -10.89752 -10.50994 -10.27188 -9.69316 -9.54185 -9.18757 -8.01560 -6.03720 0.77924 0.84377 1.35511 1.37368 1.45878 2.11224 2.46835 2.50598 3.19271 3.36460 3.39141 3.71086 4.02012 4.25375 4.25596 4.26894 4.32814 4.36211 4.42897 4.43578 4.56034 4.56804 4.66866 4.74231 4.80538 4.92916 4.94646 4.96106 5.00983 5.03259 5.06242 5.22847 5.32694 5.33753 5.39044 5.51195 5.53959 5.69058 5.79777 5.83535 5.84688 5.97109 6.19783 6.43657 6.47449 6.92361 6.98389 7.03887 7.57916 7.75271 9.08229 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012273 B = 0.004799 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.906051 B = 5833.073904 C = 6774.295450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C 0.148 3.852 4 H 0.069 0.931 5 N -0.717 5.717 6 C 0.509 3.491 7 O -0.543 6.543 8 C -0.117 4.117 9 C 0.084 3.916 10 H 0.023 0.977 11 C -0.478 4.478 12 H 0.046 0.954 13 C 0.021 3.979 14 N -0.917 5.917 15 Si 0.934 3.066 16 H -0.264 1.264 17 H -0.283 1.283 18 H -0.292 1.292 19 C -0.047 4.047 20 C -0.127 4.127 21 C -0.126 4.126 22 C -0.148 4.148 23 C -0.129 4.129 24 C -0.145 4.145 25 C 0.108 3.892 26 H 0.085 0.915 27 C -0.183 4.183 28 O -0.572 6.572 29 H 0.033 0.967 30 H 0.032 0.968 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.408 0.592 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.252 0.748 38 H 0.116 0.884 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.131 0.869 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.161 -4.978 -4.646 17.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.155 4.155 3 C 0.043 3.957 4 H 0.087 0.913 5 N -0.372 5.372 6 C 0.297 3.703 7 O -0.418 6.418 8 C -0.157 4.157 9 C 0.065 3.935 10 H 0.041 0.959 11 C -0.516 4.516 12 H 0.064 0.936 13 C -0.177 4.177 14 N -0.557 5.557 15 Si 0.761 3.239 16 H -0.188 1.188 17 H -0.209 1.209 18 H -0.219 1.219 19 C -0.048 4.048 20 C -0.145 4.145 21 C -0.144 4.144 22 C -0.165 4.165 23 C -0.147 4.147 24 C -0.163 4.163 25 C 0.049 3.951 26 H 0.103 0.897 27 C -0.240 4.240 28 O -0.381 6.381 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.244 0.756 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.134 0.866 39 H 0.159 0.841 40 H 0.162 0.838 41 H 0.149 0.851 42 H 0.110 0.890 43 H 0.102 0.898 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 14.807 -5.082 -4.046 16.169 hybrid contribution -0.035 0.797 1.003 1.282 sum 14.772 -4.285 -3.043 15.679 Atomic orbital electron populations 1.21730 0.97078 0.99973 1.01020 1.21793 0.94534 0.96199 1.03020 1.21087 0.93616 0.93306 0.87703 0.91304 1.45889 1.16325 1.58230 1.16770 1.20851 0.81443 0.77821 0.90227 1.90757 1.51929 1.57845 1.41292 1.21645 0.99619 1.00099 0.94336 1.17588 0.91336 0.95311 0.89279 0.95863 1.20968 0.96795 1.16017 1.17806 0.93622 1.25486 0.96248 0.97912 0.98074 1.70069 1.04452 1.38408 1.42802 0.85881 0.78125 0.80686 0.79209 1.18814 1.20929 1.21926 1.20607 0.94412 0.95092 0.94646 1.21047 1.01029 0.96458 0.95953 1.21377 0.97703 1.00267 0.95060 1.21266 0.96908 0.97225 1.01144 1.21282 1.00282 0.97680 0.95433 1.21101 0.98015 1.01102 0.96072 1.21909 0.90531 0.92173 0.90492 0.89709 1.22461 1.02423 0.96616 1.02527 1.86484 1.27009 1.77148 1.47467 0.94739 0.94931 0.92795 0.90980 0.89884 0.75596 0.89017 0.89927 0.93926 0.86612 0.84074 0.83835 0.85107 0.89007 0.89793 0.92632 0.92666 0.75327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.86 8.52 71.98 0.61 -4.24 16 2 C -0.12 -3.12 5.39 30.59 0.16 -2.96 16 3 C 0.15 4.03 2.09 44.99 0.09 4.12 16 4 H 0.07 2.27 7.58 -2.39 -0.02 2.25 16 5 N -0.72 -21.74 4.31 -442.53 -1.91 -23.64 16 6 C 0.51 20.77 6.15 87.65 0.54 21.31 16 7 O -0.54 -27.73 12.12 -3.03 -0.04 -27.77 16 8 C -0.12 -4.67 4.94 29.85 0.15 -4.52 16 9 C 0.08 4.21 1.69 -12.28 -0.02 4.19 16 10 H 0.02 1.38 6.95 -2.39 -0.02 1.36 16 11 C -0.48 -26.57 6.38 25.60 0.16 -26.41 16 12 H 0.05 2.51 7.82 -2.91 -0.02 2.49 16 13 C 0.02 1.24 5.45 84.66 0.46 1.70 16 14 N -0.92 -57.27 12.85 21.45 0.28 -56.99 16 15 Si 0.93 47.02 29.54 68.60 2.03 49.05 16 16 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 18 H -0.29 -14.91 7.11 99.48 0.71 -14.21 16 19 C -0.05 -2.14 4.77 -19.87 -0.09 -2.23 16 20 C -0.13 -5.02 8.86 22.27 0.20 -4.83 16 21 C -0.13 -4.16 10.05 22.27 0.22 -3.93 16 22 C -0.15 -4.67 10.05 22.27 0.22 -4.44 16 23 C -0.13 -4.62 10.05 22.27 0.22 -4.40 16 24 C -0.14 -6.36 9.67 22.27 0.22 -6.15 16 25 C 0.11 1.94 3.33 30.59 0.10 2.04 16 26 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 27 C -0.18 -3.17 9.38 71.98 0.67 -2.50 16 28 O -0.57 -8.98 12.25 -148.98 -1.82 -10.80 16 29 H 0.03 1.33 7.85 -2.39 -0.02 1.31 16 30 H 0.03 1.31 5.65 -2.39 -0.01 1.30 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 1.87 7.83 -2.39 -0.02 1.85 16 33 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.41 10.35 7.99 -92.71 -0.74 9.61 16 35 H 0.09 3.30 7.76 -2.39 -0.02 3.28 16 36 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 37 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 38 H 0.12 4.41 7.75 -2.91 -0.02 4.39 16 39 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 40 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 41 H 0.13 3.93 8.06 -2.91 -0.02 3.90 16 42 H 0.09 4.31 7.95 -2.91 -0.02 4.28 16 43 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.05 1.12 7.44 -2.39 -0.02 1.10 16 45 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.40 2.59 9.08 -74.06 -0.67 1.92 16 Total: -1.00 -74.79 372.12 2.02 -72.77 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: -0.44 Total: 30.64 kcal Atomic # 6 Polarization: -37.18 SS G_CDS: 3.93 Total: -33.25 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -1.63 Total: -80.64 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -1.86 Total: -38.57 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -74.79 2.02 -72.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456277860.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.878 kcal (2) G-P(sol) polarization free energy of solvation -74.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds