Wall clock time and date at job start Fri Apr 10 2020 21:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47467 * 2 1 4 4 H 1.08995 * 109.47213 * 54.99535 * 3 2 1 5 5 N 1.46503 * 109.46747 * 294.99819 * 3 2 1 6 6 C 1.34774 * 120.00010 * 84.99762 * 5 3 2 7 7 O 1.21276 * 120.00133 * 0.02562 * 6 5 3 8 8 C 1.50705 * 120.00077 * 180.02562 * 6 5 3 9 9 C 1.52991 * 109.47251 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.47420 * 55.00090 * 9 8 6 11 11 C 1.50706 * 109.47293 * 294.99821 * 9 8 6 12 12 H 1.07997 * 119.99465 * 325.84160 * 11 9 8 13 13 C 1.37872 * 119.99977 * 145.84053 * 11 9 8 14 14 N 1.31522 * 120.00347 * 6.11807 * 13 11 9 15 15 Si 1.86800 * 119.99973 * 186.12397 * 13 11 9 16 16 H 1.48496 * 109.46956 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47297 * 120.00227 * 15 13 11 18 18 H 1.48507 * 109.47151 * 239.99910 * 15 13 11 19 19 C 1.50700 * 109.47136 * 174.99863 * 9 8 6 20 20 C 1.38239 * 120.00135 * 63.47017 * 19 9 8 21 21 C 1.38234 * 120.00234 * 179.78608 * 20 19 9 22 22 C 1.38235 * 119.99821 * 0.44095 * 21 20 19 23 23 C 1.38238 * 120.00174 * 359.81304 * 22 21 20 24 24 C 1.38235 * 120.00243 * 243.74021 * 19 9 8 25 25 C 1.53000 * 109.47361 * 174.99837 * 3 2 1 26 26 H 1.08991 * 109.47251 * 299.99725 * 25 3 2 27 27 C 1.53000 * 109.46877 * 179.97438 * 25 3 2 28 28 O 1.42904 * 109.47198 * 59.99811 * 25 3 2 29 29 H 1.08997 * 109.47768 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47448 * 300.00806 * 1 2 3 31 31 H 1.09004 * 109.47114 * 60.00287 * 1 2 3 32 32 H 1.08999 * 109.47560 * 239.99498 * 2 1 3 33 33 H 1.09004 * 109.47114 * 119.99713 * 2 1 3 34 34 H 0.97000 * 120.00155 * 265.00139 * 5 3 2 35 35 H 1.08998 * 109.46902 * 300.00215 * 8 6 5 36 36 H 1.09000 * 109.46809 * 60.00068 * 8 6 5 37 37 H 0.97003 * 120.00088 * 180.02562 * 14 13 11 38 38 H 1.08005 * 119.99402 * 359.97438 * 20 19 9 39 39 H 1.08001 * 120.00174 * 180.27771 * 21 20 19 40 40 H 1.08000 * 119.99965 * 179.83250 * 22 21 20 41 41 H 1.08000 * 120.00219 * 179.97438 * 23 22 21 42 42 H 1.08003 * 119.99718 * 359.97438 * 24 19 9 43 43 H 1.08995 * 109.47280 * 59.99954 * 27 25 3 44 44 H 1.09007 * 109.46893 * 180.02562 * 27 25 3 45 45 H 1.09002 * 109.47385 * 299.99533 * 27 25 3 46 46 H 0.96703 * 113.99825 * 59.99677 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 7 1.6525 2.0974 -1.2519 6 6 0.4352 2.6643 -1.3671 7 8 -0.3392 2.6327 -0.4343 8 6 0.0363 3.3375 -2.6551 9 6 -1.3823 3.8944 -2.5214 10 1 -1.4344 4.5516 -1.6533 11 6 -2.3547 2.7561 -2.3488 12 1 -2.1785 1.8150 -2.8484 13 6 -3.4693 2.9162 -1.5532 14 7 -3.7487 4.0954 -1.0421 15 14 -4.5825 1.4581 -1.2008 16 1 -4.0527 0.2533 -1.8884 17 1 -4.6289 1.2131 0.2631 18 1 -5.9515 1.7490 -1.6975 19 6 -1.7354 4.6729 -3.7625 20 6 -1.8076 4.0303 -4.9843 21 6 -2.1359 4.7435 -6.1220 22 6 -2.3830 6.1011 -6.0395 23 6 -2.3056 6.7447 -4.8185 24 6 -1.9817 6.0306 -3.6801 25 6 3.5648 1.4443 0.1258 26 1 3.8532 0.9571 1.0571 27 6 4.0749 2.8868 0.1251 28 8 4.1347 0.7375 -0.9778 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2720 2.1230 -1.9979 35 1 0.7277 4.1527 -2.8682 36 1 0.0673 2.6127 -3.4686 37 1 -4.5327 4.2079 -0.4821 38 1 -1.6106 2.9704 -5.0494 39 1 -2.1967 4.2406 -7.0759 40 1 -2.6367 6.6588 -6.9288 41 1 -2.4982 7.8055 -4.7541 42 1 -1.9214 6.5335 -2.7262 43 1 3.6403 3.4262 0.9666 44 1 5.1613 2.8881 0.2142 45 1 3.7866 3.3737 -0.8065 46 1 3.9191 1.1164 -1.8411 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456277862.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:37:11 Heat of formation + Delta-G solvation = -78.672282 kcal Electronic energy + Delta-G solvation = -26011.777874 eV Core-core repulsion = 22479.672809 eV Total energy + Delta-G solvation = -3532.105066 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.78167 -38.42910 -37.55195 -34.62342 -33.79611 -32.06743 -31.32408 -30.83434 -30.00546 -28.73871 -26.46121 -25.32095 -22.86662 -21.94619 -21.64988 -20.92434 -19.99496 -19.34052 -17.20459 -16.62549 -16.36445 -15.85099 -15.37632 -14.90880 -14.66615 -14.47873 -14.25884 -14.05167 -13.88269 -13.28689 -13.19706 -12.74638 -12.56426 -12.38263 -12.28187 -12.02281 -11.93755 -11.69427 -11.63245 -11.40356 -11.17419 -10.90563 -10.87544 -10.69654 -10.54189 -10.40543 -10.25345 -10.07201 -9.98841 -9.44200 -9.04528 -8.85642 -8.47643 -8.32977 -8.04352 -7.60312 -5.93416 -3.92510 2.28975 2.34912 3.37017 3.44824 3.46838 3.54667 3.63119 4.20959 4.52218 4.62123 4.75391 4.89886 5.06659 5.38591 5.40272 5.45011 5.56400 5.64745 5.66701 5.72961 5.77080 5.84136 5.85361 5.99378 6.08165 6.10610 6.17210 6.21374 6.28761 6.36448 6.41429 6.53749 6.57936 6.80910 6.90585 6.92702 6.99450 7.05064 7.31263 7.43921 7.44973 7.53013 7.86118 7.95354 8.03266 8.08689 8.38849 9.07145 9.10820 9.69709 11.16778 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012248 B = 0.005147 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.524262 B = 5438.810295 C = 6952.711872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.115 3.885 4 H 0.092 0.908 5 N -0.744 5.744 6 C 0.513 3.487 7 O -0.486 6.486 8 C -0.123 4.123 9 C 0.081 3.919 10 H 0.071 0.929 11 C -0.489 4.489 12 H 0.050 0.950 13 C 0.080 3.920 14 N -0.881 5.881 15 Si 0.884 3.116 16 H -0.275 1.275 17 H -0.284 1.284 18 H -0.288 1.288 19 C -0.021 4.021 20 C -0.116 4.116 21 C -0.132 4.132 22 C -0.156 4.156 23 C -0.128 4.128 24 C -0.119 4.119 25 C 0.096 3.904 26 H 0.106 0.894 27 C -0.184 4.184 28 O -0.559 6.559 29 H 0.037 0.963 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.385 0.615 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.258 0.742 38 H 0.112 0.888 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.329 -1.361 -2.526 13.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.010 3.990 4 H 0.110 0.890 5 N -0.401 5.401 6 C 0.300 3.700 7 O -0.356 6.356 8 C -0.164 4.164 9 C 0.062 3.938 10 H 0.090 0.910 11 C -0.526 4.526 12 H 0.068 0.932 13 C -0.123 4.123 14 N -0.518 5.518 15 Si 0.712 3.288 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.215 1.215 19 C -0.022 4.022 20 C -0.134 4.134 21 C -0.150 4.150 22 C -0.174 4.174 23 C -0.146 4.146 24 C -0.137 4.137 25 C 0.037 3.963 26 H 0.124 0.876 27 C -0.242 4.242 28 O -0.365 6.365 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.218 0.782 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.131 0.869 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 12.811 -1.651 -1.203 12.973 hybrid contribution -0.845 -0.411 -0.572 1.100 sum 11.966 -2.062 -1.774 12.271 Atomic orbital electron populations 1.21851 0.94280 1.00186 1.04296 1.21828 0.97225 0.95607 1.01634 1.21606 0.93939 0.94119 0.89355 0.88978 1.46205 1.17858 1.60605 1.15470 1.20817 0.80130 0.78134 0.90894 1.90771 1.49155 1.55791 1.39918 1.21806 1.00951 0.99296 0.94311 1.17827 0.88557 0.95682 0.91756 0.91033 1.20687 1.06756 0.96729 1.28476 0.93171 1.24780 0.97366 0.95036 0.95110 1.69922 1.26709 1.21811 1.33365 0.86679 0.80407 0.83506 0.78182 1.19927 1.21036 1.21474 1.20749 0.92931 0.92633 0.95841 1.20944 1.00858 0.99289 0.92275 1.20973 1.01669 0.94376 0.97963 1.20793 1.04650 0.94937 0.97037 1.20984 1.01446 0.98920 0.93276 1.21085 1.00669 0.94510 0.97449 1.22268 0.91027 0.92352 0.90658 0.87600 1.22468 1.01513 0.96819 1.03360 1.86594 1.76066 1.57009 1.16784 0.94371 0.92376 0.90934 0.91849 0.92231 0.78164 0.91856 0.90654 0.93238 0.86945 0.87704 0.87840 0.87681 0.86892 0.91371 0.92011 0.91890 0.78219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.52 37.15 0.32 -2.25 16 2 C -0.12 -1.69 5.39 -26.73 -0.14 -1.83 16 3 C 0.12 1.47 2.09 -67.93 -0.14 1.33 16 4 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 5 N -0.74 -9.87 4.30 -53.80 -0.23 -10.10 16 6 C 0.51 9.38 6.15 -10.98 -0.07 9.32 16 7 O -0.49 -11.15 12.12 5.56 0.07 -11.08 16 8 C -0.12 -2.25 4.95 -27.89 -0.14 -2.39 16 9 C 0.08 1.86 1.67 -92.93 -0.16 1.71 16 10 H 0.07 1.91 6.98 -51.93 -0.36 1.55 16 11 C -0.49 -12.77 6.37 -34.44 -0.22 -12.99 16 12 H 0.05 1.32 7.82 -52.49 -0.41 0.91 16 13 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 14 N -0.88 -25.58 12.87 55.43 0.71 -24.87 16 15 Si 0.88 22.14 29.54 -169.99 -5.02 17.12 16 16 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 19 C -0.02 -0.45 4.77 -104.62 -0.50 -0.95 16 20 C -0.12 -2.29 8.86 -39.58 -0.35 -2.64 16 21 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 22 C -0.16 -2.69 10.05 -39.58 -0.40 -3.09 16 23 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 24 C -0.12 -2.48 9.67 -39.58 -0.38 -2.86 16 25 C 0.10 0.96 3.41 -26.73 -0.09 0.87 16 26 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 27 C -0.18 -1.68 9.38 37.16 0.35 -1.33 16 28 O -0.56 -5.67 12.76 -35.23 -0.45 -6.12 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 1.09 7.85 -51.93 -0.41 0.68 16 31 H 0.07 1.46 5.65 -51.93 -0.29 1.16 16 32 H 0.06 0.84 7.84 -51.93 -0.41 0.43 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.39 3.87 6.94 -40.82 -0.28 3.59 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.28 7.78 -51.93 -0.40 0.88 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.11 2.15 7.76 -52.48 -0.41 1.74 16 39 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.11 2.38 7.95 -52.48 -0.42 1.96 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 45 H 0.06 0.57 7.44 -51.93 -0.39 0.18 16 46 H 0.37 2.75 7.51 45.56 0.34 3.09 16 LS Contribution 370.14 15.07 5.58 5.58 Total: -1.00 -31.47 370.14 -8.93 -40.40 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -6.77 Total: 9.52 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -2.82 Total: -20.45 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.48 Total: -34.97 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.38 Total: -17.20 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.47 -8.93 -40.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456277862.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.271 kcal (2) G-P(sol) polarization free energy of solvation -31.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds