Wall clock time and date at job start Fri Apr 10 2020 21:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47467 * 2 1 4 4 H 1.08995 * 109.47213 * 54.99535 * 3 2 1 5 5 N 1.46503 * 109.46747 * 294.99819 * 3 2 1 6 6 C 1.34774 * 120.00010 * 84.99762 * 5 3 2 7 7 O 1.21276 * 120.00133 * 0.02562 * 6 5 3 8 8 C 1.50705 * 120.00077 * 180.02562 * 6 5 3 9 9 C 1.52991 * 109.47251 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.47420 * 55.00090 * 9 8 6 11 11 C 1.50706 * 109.47293 * 294.99821 * 9 8 6 12 12 H 1.07997 * 119.99465 * 325.84160 * 11 9 8 13 13 C 1.37872 * 119.99977 * 145.84053 * 11 9 8 14 14 N 1.31522 * 120.00347 * 6.11807 * 13 11 9 15 15 Si 1.86800 * 119.99973 * 186.12397 * 13 11 9 16 16 H 1.48496 * 109.46956 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47297 * 120.00227 * 15 13 11 18 18 H 1.48507 * 109.47151 * 239.99910 * 15 13 11 19 19 C 1.50700 * 109.47136 * 174.99863 * 9 8 6 20 20 C 1.38239 * 120.00135 * 63.47017 * 19 9 8 21 21 C 1.38234 * 120.00234 * 179.78608 * 20 19 9 22 22 C 1.38235 * 119.99821 * 0.44095 * 21 20 19 23 23 C 1.38238 * 120.00174 * 359.81304 * 22 21 20 24 24 C 1.38235 * 120.00243 * 243.74021 * 19 9 8 25 25 C 1.53000 * 109.47361 * 174.99837 * 3 2 1 26 26 H 1.08991 * 109.47251 * 299.99725 * 25 3 2 27 27 C 1.53000 * 109.46877 * 179.97438 * 25 3 2 28 28 O 1.42904 * 109.47198 * 59.99811 * 25 3 2 29 29 H 1.08997 * 109.47768 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47448 * 300.00806 * 1 2 3 31 31 H 1.09004 * 109.47114 * 60.00287 * 1 2 3 32 32 H 1.08999 * 109.47560 * 239.99498 * 2 1 3 33 33 H 1.09004 * 109.47114 * 119.99713 * 2 1 3 34 34 H 0.97000 * 120.00155 * 265.00139 * 5 3 2 35 35 H 1.08998 * 109.46902 * 300.00215 * 8 6 5 36 36 H 1.09000 * 109.46809 * 60.00068 * 8 6 5 37 37 H 0.97003 * 120.00088 * 180.02562 * 14 13 11 38 38 H 1.08005 * 119.99402 * 359.97438 * 20 19 9 39 39 H 1.08001 * 120.00174 * 180.27771 * 21 20 19 40 40 H 1.08000 * 119.99965 * 179.83250 * 22 21 20 41 41 H 1.08000 * 120.00219 * 179.97438 * 23 22 21 42 42 H 1.08003 * 119.99718 * 359.97438 * 24 19 9 43 43 H 1.08995 * 109.47280 * 59.99954 * 27 25 3 44 44 H 1.09007 * 109.46893 * 180.02562 * 27 25 3 45 45 H 1.09002 * 109.47385 * 299.99533 * 27 25 3 46 46 H 0.96703 * 113.99825 * 59.99677 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 7 1.6525 2.0974 -1.2519 6 6 0.4352 2.6643 -1.3671 7 8 -0.3392 2.6327 -0.4343 8 6 0.0363 3.3375 -2.6551 9 6 -1.3823 3.8944 -2.5214 10 1 -1.4344 4.5516 -1.6533 11 6 -2.3547 2.7561 -2.3488 12 1 -2.1785 1.8150 -2.8484 13 6 -3.4693 2.9162 -1.5532 14 7 -3.7487 4.0954 -1.0421 15 14 -4.5825 1.4581 -1.2008 16 1 -4.0527 0.2533 -1.8884 17 1 -4.6289 1.2131 0.2631 18 1 -5.9515 1.7490 -1.6975 19 6 -1.7354 4.6729 -3.7625 20 6 -1.8076 4.0303 -4.9843 21 6 -2.1359 4.7435 -6.1220 22 6 -2.3830 6.1011 -6.0395 23 6 -2.3056 6.7447 -4.8185 24 6 -1.9817 6.0306 -3.6801 25 6 3.5648 1.4443 0.1258 26 1 3.8532 0.9571 1.0571 27 6 4.0749 2.8868 0.1251 28 8 4.1347 0.7375 -0.9778 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2720 2.1230 -1.9979 35 1 0.7277 4.1527 -2.8682 36 1 0.0673 2.6127 -3.4686 37 1 -4.5327 4.2079 -0.4821 38 1 -1.6106 2.9704 -5.0494 39 1 -2.1967 4.2406 -7.0759 40 1 -2.6367 6.6588 -6.9288 41 1 -2.4982 7.8055 -4.7541 42 1 -1.9214 6.5335 -2.7262 43 1 3.6403 3.4262 0.9666 44 1 5.1613 2.8881 0.2142 45 1 3.7866 3.3737 -0.8065 46 1 3.9191 1.1164 -1.8411 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456277862.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:37:10 Heat of formation + Delta-G solvation = -99.059049 kcal Electronic energy + Delta-G solvation = -26012.661911 eV Core-core repulsion = 22479.672809 eV Total energy + Delta-G solvation = -3532.989102 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.07328 -39.87513 -38.73136 -35.97127 -35.34812 -33.61195 -33.01307 -31.73419 -31.48220 -30.20299 -27.83956 -26.97947 -24.51353 -23.14057 -22.94593 -22.19399 -21.28020 -20.90941 -18.54875 -18.25203 -17.74438 -17.22805 -16.57374 -16.36857 -16.26395 -15.69514 -15.62304 -15.42003 -15.19193 -14.72305 -14.63743 -14.08233 -13.96935 -13.85184 -13.57637 -13.46328 -13.30591 -13.16668 -12.89187 -12.83680 -12.59323 -12.50155 -12.38135 -12.31658 -11.89556 -11.80648 -11.67904 -11.58844 -11.29108 -10.94947 -10.91351 -10.57584 -10.25775 -9.75452 -9.52644 -9.16877 -8.03496 -6.04317 0.79453 0.85953 1.32994 1.37450 1.43835 2.09752 2.41776 2.45962 3.20365 3.37987 3.41955 3.68543 4.00001 4.19624 4.23920 4.27603 4.34936 4.37136 4.40207 4.43632 4.57447 4.57488 4.68438 4.75742 4.80093 4.90801 4.94799 4.98582 5.02247 5.05812 5.08786 5.23182 5.28161 5.34082 5.40032 5.54617 5.55618 5.66767 5.75504 5.81093 5.85497 5.97501 6.19588 6.44109 6.48650 6.75582 6.85971 7.03948 7.58448 7.72605 9.06412 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012248 B = 0.005147 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.524262 B = 5438.810295 C = 6952.711872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C 0.116 3.884 4 H 0.068 0.932 5 N -0.721 5.721 6 C 0.513 3.487 7 O -0.541 6.541 8 C -0.118 4.118 9 C 0.084 3.916 10 H 0.024 0.976 11 C -0.475 4.475 12 H 0.045 0.955 13 C 0.028 3.972 14 N -0.917 5.917 15 Si 0.927 3.073 16 H -0.266 1.266 17 H -0.294 1.294 18 H -0.285 1.285 19 C -0.045 4.045 20 C -0.127 4.127 21 C -0.127 4.127 22 C -0.149 4.149 23 C -0.129 4.129 24 C -0.143 4.143 25 C 0.111 3.889 26 H 0.118 0.882 27 C -0.181 4.181 28 O -0.565 6.565 29 H 0.046 0.954 30 H 0.031 0.969 31 H 0.040 0.960 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.405 0.595 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.252 0.748 38 H 0.115 0.885 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.130 0.870 42 H 0.093 0.907 43 H 0.060 0.940 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.304 -1.937 -5.138 16.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.155 4.155 3 C 0.011 3.989 4 H 0.086 0.914 5 N -0.378 5.378 6 C 0.300 3.700 7 O -0.416 6.416 8 C -0.158 4.158 9 C 0.065 3.935 10 H 0.042 0.958 11 C -0.513 4.513 12 H 0.063 0.937 13 C -0.171 4.171 14 N -0.557 5.557 15 Si 0.755 3.245 16 H -0.190 1.190 17 H -0.221 1.221 18 H -0.211 1.211 19 C -0.045 4.045 20 C -0.145 4.145 21 C -0.144 4.144 22 C -0.167 4.167 23 C -0.147 4.147 24 C -0.162 4.162 25 C 0.051 3.949 26 H 0.135 0.865 27 C -0.239 4.239 28 O -0.371 6.371 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.242 0.758 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.061 0.939 38 H 0.133 0.867 39 H 0.158 0.842 40 H 0.160 0.840 41 H 0.148 0.852 42 H 0.111 0.889 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 14.843 -2.252 -3.864 15.502 hybrid contribution -1.383 -0.204 0.153 1.406 sum 13.461 -2.456 -3.711 14.177 Atomic orbital electron populations 1.21761 0.97203 0.99709 1.01456 1.21779 0.94303 0.96316 1.03092 1.21672 0.96138 0.93185 0.87944 0.91415 1.45866 1.16502 1.58916 1.16526 1.20844 0.80979 0.77978 0.90157 1.90766 1.51229 1.58078 1.41538 1.21672 0.98698 1.00449 0.94948 1.17605 0.90699 0.94164 0.91032 0.95779 1.20951 1.06355 0.97243 1.26723 0.93657 1.25382 0.99095 0.96580 0.96016 1.70053 1.27301 1.23260 1.35083 0.85988 0.79360 0.81816 0.77354 1.19033 1.22092 1.21112 1.20594 0.94871 0.93124 0.95960 1.21034 1.01554 0.99620 0.92326 1.21365 0.99833 0.94732 0.98520 1.21253 1.02615 0.95033 0.97762 1.21280 1.00374 1.00199 0.92828 1.21096 1.02421 0.94749 0.97898 1.22137 0.88273 0.93147 0.91327 0.86471 1.22442 1.02314 0.95993 1.03138 1.86590 1.75832 1.57266 1.17461 0.93543 0.94964 0.94041 0.90727 0.90261 0.75802 0.89271 0.88878 0.93942 0.86662 0.84244 0.84001 0.85177 0.88887 0.92100 0.90618 0.91796 0.76806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.06 8.52 71.98 0.61 -4.45 16 2 C -0.12 -3.01 5.39 30.59 0.16 -2.85 16 3 C 0.12 2.85 2.09 44.99 0.09 2.95 16 4 H 0.07 2.06 7.58 -2.39 -0.02 2.05 16 5 N -0.72 -18.48 4.30 -442.53 -1.90 -20.38 16 6 C 0.51 19.11 6.15 87.66 0.54 19.65 16 7 O -0.54 -26.22 12.12 -3.02 -0.04 -26.26 16 8 C -0.12 -4.30 4.95 29.85 0.15 -4.15 16 9 C 0.08 4.03 1.67 -12.29 -0.02 4.01 16 10 H 0.02 1.37 6.98 -2.39 -0.02 1.35 16 11 C -0.47 -25.61 6.37 25.60 0.16 -25.45 16 12 H 0.05 2.43 7.82 -2.91 -0.02 2.40 16 13 C 0.03 1.61 5.45 84.65 0.46 2.07 16 14 N -0.92 -56.20 12.87 21.45 0.28 -55.93 16 15 Si 0.93 46.96 29.54 68.60 2.03 48.98 16 16 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 17 H -0.29 -15.22 7.11 99.48 0.71 -14.52 16 18 H -0.28 -14.12 7.11 99.48 0.71 -13.41 16 19 C -0.04 -1.97 4.77 -19.86 -0.09 -2.06 16 20 C -0.13 -4.87 8.86 22.27 0.20 -4.67 16 21 C -0.13 -4.06 10.05 22.27 0.22 -3.83 16 22 C -0.15 -4.58 10.05 22.27 0.22 -4.35 16 23 C -0.13 -4.48 10.05 22.27 0.22 -4.26 16 24 C -0.14 -6.08 9.67 22.27 0.22 -5.86 16 25 C 0.11 1.95 3.41 30.59 0.10 2.05 16 26 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 27 C -0.18 -2.92 9.38 71.98 0.67 -2.25 16 28 O -0.56 -9.57 12.76 -148.98 -1.90 -11.47 16 29 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.03 1.26 7.85 -2.38 -0.02 1.24 16 31 H 0.04 1.70 5.65 -2.39 -0.01 1.69 16 32 H 0.07 1.80 7.84 -2.39 -0.02 1.78 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.41 7.20 6.94 -92.71 -0.64 6.56 16 35 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.09 3.06 7.78 -2.39 -0.02 3.04 16 37 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 38 H 0.12 4.24 7.76 -2.91 -0.02 4.22 16 39 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 40 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 41 H 0.13 3.78 8.06 -2.91 -0.02 3.75 16 42 H 0.09 4.19 7.95 -2.91 -0.02 4.16 16 43 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 45 H 0.06 1.01 7.44 -2.39 -0.02 0.99 16 46 H 0.38 4.32 7.51 -74.06 -0.56 3.76 16 Total: -1.00 -72.90 370.14 2.17 -70.74 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: -0.23 Total: 27.77 kcal Atomic # 6 Polarization: -37.38 SS G_CDS: 3.93 Total: -33.45 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -1.63 Total: -76.31 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -1.94 Total: -37.73 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.98 kcal Total: -72.90 2.17 -70.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456277862.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.322 kcal (2) G-P(sol) polarization free energy of solvation -72.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds