Wall clock time and date at job start Fri Apr 10 2020 21:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47092 * 2 1 4 4 H 1.09001 * 109.46906 * 55.00020 * 3 2 1 5 5 N 1.46495 * 109.46977 * 295.00059 * 3 2 1 6 6 C 1.34785 * 119.99912 * 155.00023 * 5 3 2 7 7 O 1.21275 * 120.00072 * 359.97438 * 6 5 3 8 8 C 1.50702 * 119.99778 * 180.02562 * 6 5 3 9 9 C 1.52991 * 109.46896 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47662 * 54.99311 * 9 8 6 11 11 C 1.50707 * 109.46973 * 294.99513 * 9 8 6 12 12 H 1.07994 * 119.99821 * 325.84358 * 11 9 8 13 13 C 1.37881 * 119.99772 * 145.84614 * 11 9 8 14 14 N 1.31506 * 119.99926 * 6.11990 * 13 11 9 15 15 Si 1.86805 * 119.99468 * 186.12135 * 13 11 9 16 16 H 1.48495 * 109.47290 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46843 * 120.00037 * 15 13 11 18 18 H 1.48499 * 109.46964 * 239.99790 * 15 13 11 19 19 C 1.50704 * 109.47358 * 174.99658 * 9 8 6 20 20 C 1.38234 * 119.99806 * 63.46332 * 19 9 8 21 21 C 1.38235 * 120.00260 * 179.78780 * 20 19 9 22 22 C 1.38240 * 119.99715 * 0.44936 * 21 20 19 23 23 C 1.38240 * 119.99955 * 359.80243 * 22 21 20 24 24 C 1.38233 * 120.00117 * 243.74418 * 19 9 8 25 25 C 1.52999 * 109.47268 * 174.99799 * 3 2 1 26 26 H 1.09001 * 109.46977 * 60.00264 * 25 3 2 27 27 C 1.53003 * 109.47268 * 180.02562 * 25 3 2 28 28 O 1.42895 * 109.47466 * 300.00041 * 25 3 2 29 29 H 1.08999 * 109.47086 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47260 * 299.99886 * 1 2 3 31 31 H 1.08997 * 109.47284 * 60.00305 * 1 2 3 32 32 H 1.09001 * 109.47260 * 240.00114 * 2 1 3 33 33 H 1.09007 * 109.47364 * 119.99826 * 2 1 3 34 34 H 0.97000 * 120.00550 * 334.99803 * 5 3 2 35 35 H 1.09007 * 109.46747 * 299.99665 * 8 6 5 36 36 H 1.08997 * 109.47146 * 59.99437 * 8 6 5 37 37 H 0.97006 * 119.99945 * 180.02562 * 14 13 11 38 38 H 1.08005 * 120.00060 * 0.02562 * 20 19 9 39 39 H 1.07993 * 120.00502 * 180.27598 * 21 20 19 40 40 H 1.07999 * 120.00237 * 179.83129 * 22 21 20 41 41 H 1.07993 * 120.00358 * 180.02562 * 23 22 21 42 42 H 1.07998 * 119.99976 * 359.97438 * 24 19 9 43 43 H 1.09001 * 109.47148 * 59.99726 * 27 25 3 44 44 H 1.09001 * 109.46840 * 299.99883 * 27 25 3 45 45 H 1.08991 * 109.47230 * 180.02562 * 27 25 3 46 46 H 0.96702 * 114.00201 * 59.99612 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 1.5255 3.4385 -1.2995 7 8 1.7318 4.1029 -0.3062 8 6 1.1262 4.1121 -2.5871 9 6 1.0556 5.6250 -2.3705 10 1 2.0057 5.9796 -1.9708 11 6 -0.0491 5.9419 -1.3956 12 1 -0.9473 5.3423 -1.3839 13 6 0.0870 6.9972 -0.5188 14 7 1.1242 7.8002 -0.6123 15 14 -1.2020 7.2861 0.8020 16 1 -2.2605 6.2500 0.6958 17 1 -0.5650 7.2068 2.1411 18 1 -1.8049 8.6309 0.6195 19 6 0.7771 6.3082 -3.6846 20 6 -0.4118 6.0709 -4.3487 21 6 -0.6692 6.7009 -5.5519 22 6 0.2664 7.5611 -6.0956 23 6 1.4576 7.7945 -5.4341 24 6 1.7131 7.1677 -4.2288 25 6 3.5648 1.4444 0.1258 26 1 3.9994 0.9054 -0.7161 27 6 4.0747 2.8870 0.1264 28 8 3.9428 0.8056 1.3468 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.4870 1.5661 -2.0463 35 1 1.8646 3.8898 -3.3576 36 1 0.1500 3.7438 -2.9024 37 1 1.2201 8.5425 0.0048 38 1 -1.1413 5.3961 -3.9255 39 1 -1.5999 6.5189 -6.0685 40 1 0.0665 8.0513 -7.0370 41 1 2.1883 8.4668 -5.8587 42 1 2.6437 7.3500 -3.7120 43 1 3.6400 3.4256 0.9684 44 1 3.7863 3.3746 -0.8048 45 1 5.1610 2.8883 0.2156 46 1 3.6520 -0.1140 1.4160 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456277863.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:37:16 Heat of formation + Delta-G solvation = -78.142947 kcal Electronic energy + Delta-G solvation = -25879.153712 eV Core-core repulsion = 22347.071600 eV Total energy + Delta-G solvation = -3532.082112 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.69924 -38.38694 -37.37923 -34.97204 -33.90421 -32.05977 -31.43126 -30.56909 -29.99539 -28.69219 -26.51481 -25.23683 -22.81410 -22.01287 -21.62955 -20.73632 -20.14201 -19.21391 -17.54685 -16.63237 -16.29445 -16.00616 -15.70716 -15.01059 -14.46968 -14.19777 -14.06940 -13.94811 -13.79790 -13.52836 -12.98270 -12.71146 -12.52094 -12.39270 -12.26066 -12.01504 -11.90918 -11.68533 -11.63538 -11.46062 -11.38815 -11.01243 -10.86692 -10.68494 -10.55826 -10.48844 -10.24590 -10.11597 -10.03433 -9.43043 -9.04372 -8.81990 -8.46527 -8.29755 -8.03440 -7.59317 -5.91880 -3.90969 2.29873 2.35832 3.38392 3.46269 3.47793 3.55105 3.64014 4.42063 4.53629 4.58681 4.76283 4.88676 4.96931 5.24410 5.37385 5.43258 5.48356 5.66905 5.69043 5.73809 5.74251 5.82128 5.85135 5.86068 6.09408 6.11630 6.17691 6.19585 6.21902 6.29376 6.34855 6.42400 6.54940 6.74318 6.82104 6.92183 6.93763 7.06035 7.32099 7.45812 7.54108 7.65687 7.87487 7.96406 8.05677 8.12235 8.40282 9.08439 9.12106 9.71107 11.18266 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012479 B = 0.004745 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.296495 B = 5899.660004 C = 6745.219992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C 0.115 3.885 4 H 0.094 0.906 5 N -0.741 5.741 6 C 0.511 3.489 7 O -0.486 6.486 8 C -0.123 4.123 9 C 0.080 3.920 10 H 0.072 0.928 11 C -0.491 4.491 12 H 0.050 0.950 13 C 0.079 3.921 14 N -0.880 5.880 15 Si 0.886 3.114 16 H -0.276 1.276 17 H -0.284 1.284 18 H -0.288 1.288 19 C -0.021 4.021 20 C -0.116 4.116 21 C -0.132 4.132 22 C -0.156 4.156 23 C -0.128 4.128 24 C -0.119 4.119 25 C 0.094 3.906 26 H 0.049 0.951 27 C -0.138 4.138 28 O -0.564 6.564 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.391 0.609 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.258 0.742 38 H 0.112 0.888 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.047 0.953 46 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.774 -14.060 -5.170 15.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.172 4.172 3 C 0.009 3.991 4 H 0.112 0.888 5 N -0.398 5.398 6 C 0.298 3.702 7 O -0.356 6.356 8 C -0.163 4.163 9 C 0.061 3.939 10 H 0.090 0.910 11 C -0.528 4.528 12 H 0.068 0.932 13 C -0.124 4.124 14 N -0.517 5.517 15 Si 0.714 3.286 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.215 1.215 19 C -0.021 4.021 20 C -0.134 4.134 21 C -0.150 4.150 22 C -0.174 4.174 23 C -0.146 4.146 24 C -0.137 4.137 25 C 0.034 3.966 26 H 0.067 0.933 27 C -0.195 4.195 28 O -0.369 6.369 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.225 0.775 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.066 0.934 46 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 2.281 -12.767 -4.192 13.630 hybrid contribution -1.188 -0.461 0.234 1.296 sum 1.092 -13.227 -3.959 13.850 Atomic orbital electron populations 1.21716 0.94844 1.01276 1.02852 1.21827 0.97313 0.95887 1.02168 1.21590 0.94633 0.93064 0.89774 0.88831 1.46183 1.73733 1.07809 1.12101 1.20866 0.76730 0.80857 0.91782 1.90779 1.45692 1.63203 1.35963 1.21805 1.00807 1.00317 0.93407 1.17832 1.00876 0.86299 0.88844 0.90985 1.20697 1.01902 1.13867 1.16328 0.93188 1.24792 0.95119 0.95739 0.96739 1.69916 1.28837 1.15956 1.37008 0.86653 0.81791 0.77543 0.82592 1.20032 1.21043 1.21451 1.20747 0.92096 0.94790 0.94491 1.20941 0.97403 1.00632 0.94398 1.20971 0.98544 0.98585 0.96901 1.20793 0.95324 1.01175 1.00141 1.20984 0.97118 1.00238 0.96278 1.21087 0.99849 0.97939 0.94826 1.22289 0.93493 0.95084 0.85737 0.93316 1.21823 0.99957 0.93357 1.04344 1.86606 1.80581 1.29563 1.40171 0.92886 0.92446 0.92128 0.91600 0.90974 0.77541 0.91797 0.90634 0.93220 0.86957 0.87716 0.87842 0.87674 0.86864 0.90832 0.90674 0.93388 0.78415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.80 37.15 0.36 -1.10 16 2 C -0.13 -1.22 5.29 -26.73 -0.14 -1.36 16 3 C 0.12 1.50 2.05 -67.93 -0.14 1.36 16 4 H 0.09 1.55 7.58 -51.93 -0.39 1.16 16 5 N -0.74 -10.18 4.42 -53.81 -0.24 -10.42 16 6 C 0.51 9.53 5.93 -10.98 -0.07 9.46 16 7 O -0.49 -11.38 12.11 5.56 0.07 -11.32 16 8 C -0.12 -2.28 4.95 -27.89 -0.14 -2.42 16 9 C 0.08 1.88 1.67 -92.92 -0.16 1.72 16 10 H 0.07 1.93 6.98 -51.93 -0.36 1.57 16 11 C -0.49 -12.99 6.37 -34.44 -0.22 -13.21 16 12 H 0.05 1.33 7.82 -52.49 -0.41 0.92 16 13 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 14 N -0.88 -25.75 12.87 55.43 0.71 -25.03 16 15 Si 0.89 22.35 29.54 -169.99 -5.02 17.32 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 C -0.02 -0.45 4.77 -104.62 -0.50 -0.95 16 20 C -0.12 -2.31 8.86 -39.58 -0.35 -2.66 16 21 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 22 C -0.16 -2.71 10.05 -39.58 -0.40 -3.11 16 23 C -0.13 -2.36 10.05 -39.58 -0.40 -2.75 16 24 C -0.12 -2.49 9.67 -39.58 -0.38 -2.87 16 25 C 0.09 1.25 3.41 -26.73 -0.09 1.16 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 C -0.14 -2.29 8.09 37.16 0.30 -1.99 16 28 O -0.56 -7.26 13.28 -35.23 -0.47 -7.73 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.63 7.75 -51.93 -0.40 0.23 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.55 6.54 -51.93 -0.34 0.21 16 34 H 0.39 4.18 8.60 -40.82 -0.35 3.83 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 1.30 7.78 -51.93 -0.40 0.90 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.11 2.16 7.76 -52.48 -0.41 1.75 16 39 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 41 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.11 2.40 7.95 -52.49 -0.42 1.98 16 43 H 0.07 1.43 7.53 -51.93 -0.39 1.04 16 44 H 0.07 1.33 5.78 -51.93 -0.30 1.03 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.37 3.03 7.26 45.56 0.33 3.36 16 LS Contribution 370.65 15.07 5.59 5.59 Total: -1.00 -32.28 370.65 -8.96 -41.23 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -6.79 Total: 9.67 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -2.81 Total: -19.32 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.48 Total: -35.45 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.40 Total: -19.05 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.28 -8.96 -41.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456277863.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.909 kcal (2) G-P(sol) polarization free energy of solvation -32.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds