Wall clock time and date at job start Fri Apr 10 2020 21:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47092 * 2 1 4 4 H 1.09001 * 109.46906 * 55.00020 * 3 2 1 5 5 N 1.46495 * 109.46977 * 295.00059 * 3 2 1 6 6 C 1.34785 * 119.99912 * 155.00023 * 5 3 2 7 7 O 1.21275 * 120.00072 * 359.97438 * 6 5 3 8 8 C 1.50702 * 119.99778 * 180.02562 * 6 5 3 9 9 C 1.52991 * 109.46896 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47662 * 54.99311 * 9 8 6 11 11 C 1.50707 * 109.46973 * 294.99513 * 9 8 6 12 12 H 1.07994 * 119.99821 * 325.84358 * 11 9 8 13 13 C 1.37881 * 119.99772 * 145.84614 * 11 9 8 14 14 N 1.31506 * 119.99926 * 6.11990 * 13 11 9 15 15 Si 1.86805 * 119.99468 * 186.12135 * 13 11 9 16 16 H 1.48495 * 109.47290 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46843 * 120.00037 * 15 13 11 18 18 H 1.48499 * 109.46964 * 239.99790 * 15 13 11 19 19 C 1.50704 * 109.47358 * 174.99658 * 9 8 6 20 20 C 1.38234 * 119.99806 * 63.46332 * 19 9 8 21 21 C 1.38235 * 120.00260 * 179.78780 * 20 19 9 22 22 C 1.38240 * 119.99715 * 0.44936 * 21 20 19 23 23 C 1.38240 * 119.99955 * 359.80243 * 22 21 20 24 24 C 1.38233 * 120.00117 * 243.74418 * 19 9 8 25 25 C 1.52999 * 109.47268 * 174.99799 * 3 2 1 26 26 H 1.09001 * 109.46977 * 60.00264 * 25 3 2 27 27 C 1.53003 * 109.47268 * 180.02562 * 25 3 2 28 28 O 1.42895 * 109.47466 * 300.00041 * 25 3 2 29 29 H 1.08999 * 109.47086 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47260 * 299.99886 * 1 2 3 31 31 H 1.08997 * 109.47284 * 60.00305 * 1 2 3 32 32 H 1.09001 * 109.47260 * 240.00114 * 2 1 3 33 33 H 1.09007 * 109.47364 * 119.99826 * 2 1 3 34 34 H 0.97000 * 120.00550 * 334.99803 * 5 3 2 35 35 H 1.09007 * 109.46747 * 299.99665 * 8 6 5 36 36 H 1.08997 * 109.47146 * 59.99437 * 8 6 5 37 37 H 0.97006 * 119.99945 * 180.02562 * 14 13 11 38 38 H 1.08005 * 120.00060 * 0.02562 * 20 19 9 39 39 H 1.07993 * 120.00502 * 180.27598 * 21 20 19 40 40 H 1.07999 * 120.00237 * 179.83129 * 22 21 20 41 41 H 1.07993 * 120.00358 * 180.02562 * 23 22 21 42 42 H 1.07998 * 119.99976 * 359.97438 * 24 19 9 43 43 H 1.09001 * 109.47148 * 59.99726 * 27 25 3 44 44 H 1.09001 * 109.46840 * 299.99883 * 27 25 3 45 45 H 1.08991 * 109.47230 * 180.02562 * 27 25 3 46 46 H 0.96702 * 114.00201 * 59.99612 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 1.5255 3.4385 -1.2995 7 8 1.7318 4.1029 -0.3062 8 6 1.1262 4.1121 -2.5871 9 6 1.0556 5.6250 -2.3705 10 1 2.0057 5.9796 -1.9708 11 6 -0.0491 5.9419 -1.3956 12 1 -0.9473 5.3423 -1.3839 13 6 0.0870 6.9972 -0.5188 14 7 1.1242 7.8002 -0.6123 15 14 -1.2020 7.2861 0.8020 16 1 -2.2605 6.2500 0.6958 17 1 -0.5650 7.2068 2.1411 18 1 -1.8049 8.6309 0.6195 19 6 0.7771 6.3082 -3.6846 20 6 -0.4118 6.0709 -4.3487 21 6 -0.6692 6.7009 -5.5519 22 6 0.2664 7.5611 -6.0956 23 6 1.4576 7.7945 -5.4341 24 6 1.7131 7.1677 -4.2288 25 6 3.5648 1.4444 0.1258 26 1 3.9994 0.9054 -0.7161 27 6 4.0747 2.8870 0.1264 28 8 3.9428 0.8056 1.3468 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.4870 1.5661 -2.0463 35 1 1.8646 3.8898 -3.3576 36 1 0.1500 3.7438 -2.9024 37 1 1.2201 8.5425 0.0048 38 1 -1.1413 5.3961 -3.9255 39 1 -1.5999 6.5189 -6.0685 40 1 0.0665 8.0513 -7.0370 41 1 2.1883 8.4668 -5.8587 42 1 2.6437 7.3500 -3.7120 43 1 3.6400 3.4256 0.9684 44 1 3.7863 3.3746 -0.8048 45 1 5.1610 2.8883 0.2156 46 1 3.6520 -0.1140 1.4160 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456277863.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:37:15 Heat of formation + Delta-G solvation = -99.988694 kcal Electronic energy + Delta-G solvation = -25880.101014 eV Core-core repulsion = 22347.071600 eV Total energy + Delta-G solvation = -3533.029415 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.05099 -39.86249 -38.64567 -36.16874 -35.61780 -33.49237 -32.99418 -31.84059 -31.48241 -30.16916 -27.89968 -26.88593 -24.47627 -23.13334 -22.98371 -21.97614 -21.46379 -20.81038 -18.62815 -18.47449 -17.87347 -17.24047 -17.09988 -16.44183 -16.22797 -15.66912 -15.54716 -15.22529 -14.89493 -14.85873 -14.32909 -14.27975 -13.95366 -13.69826 -13.58951 -13.45335 -13.30763 -13.16036 -12.99858 -12.88652 -12.87085 -12.50709 -12.38811 -12.35296 -11.81646 -11.80240 -11.67316 -11.54609 -11.29738 -11.21503 -10.92442 -10.57304 -10.27622 -9.70649 -9.52717 -9.17070 -8.03998 -6.05256 0.79335 0.85863 1.32741 1.37487 1.43760 2.06925 2.41988 2.45531 3.20060 3.37217 3.43221 3.61808 3.89039 4.10145 4.25578 4.27508 4.31681 4.37222 4.43161 4.43711 4.55231 4.57219 4.68382 4.74498 4.77872 4.87041 4.94798 4.96118 5.00415 5.02065 5.08078 5.20051 5.29958 5.35773 5.39692 5.41078 5.54983 5.66297 5.74762 5.80483 5.85293 5.97427 6.19184 6.43852 6.48374 6.86417 6.89596 7.03180 7.57416 7.72023 9.05708 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012479 B = 0.004745 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.296495 B = 5899.660004 C = 6745.219992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.116 3.884 4 H 0.050 0.950 5 N -0.718 5.718 6 C 0.510 3.490 7 O -0.544 6.544 8 C -0.117 4.117 9 C 0.084 3.916 10 H 0.024 0.976 11 C -0.479 4.479 12 H 0.046 0.954 13 C 0.025 3.975 14 N -0.916 5.916 15 Si 0.931 3.069 16 H -0.266 1.266 17 H -0.295 1.295 18 H -0.283 1.283 19 C -0.045 4.045 20 C -0.127 4.127 21 C -0.126 4.126 22 C -0.149 4.149 23 C -0.129 4.129 24 C -0.144 4.144 25 C 0.103 3.897 26 H 0.081 0.919 27 C -0.136 4.136 28 O -0.578 6.578 29 H 0.076 0.924 30 H 0.034 0.966 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.412 0.588 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.252 0.748 38 H 0.116 0.884 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.130 0.870 42 H 0.092 0.908 43 H 0.032 0.968 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.632 -16.604 -7.823 18.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C 0.010 3.990 4 H 0.069 0.931 5 N -0.375 5.375 6 C 0.297 3.703 7 O -0.419 6.419 8 C -0.157 4.157 9 C 0.065 3.935 10 H 0.042 0.958 11 C -0.517 4.517 12 H 0.064 0.936 13 C -0.174 4.174 14 N -0.556 5.556 15 Si 0.759 3.241 16 H -0.190 1.190 17 H -0.222 1.222 18 H -0.209 1.209 19 C -0.045 4.045 20 C -0.145 4.145 21 C -0.144 4.144 22 C -0.166 4.166 23 C -0.147 4.147 24 C -0.162 4.162 25 C 0.043 3.957 26 H 0.099 0.901 27 C -0.193 4.193 28 O -0.387 6.387 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.249 0.751 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.061 0.939 38 H 0.134 0.866 39 H 0.158 0.842 40 H 0.161 0.839 41 H 0.148 0.852 42 H 0.111 0.889 43 H 0.051 0.949 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 1.112 -15.392 -6.877 16.895 hybrid contribution -0.805 0.268 0.977 1.294 sum 0.307 -15.123 -5.900 16.237 Atomic orbital electron populations 1.21730 0.95367 1.02351 1.01375 1.21816 0.96701 0.92820 1.04737 1.21632 0.94616 0.95065 0.87642 0.93129 1.45872 1.71950 1.06296 1.13403 1.20931 0.76107 0.82273 0.90986 1.90778 1.48528 1.64872 1.37707 1.21674 1.02653 0.97200 0.94192 1.17608 0.97265 0.89468 0.89206 0.95793 1.20990 1.02072 1.12351 1.16302 0.93587 1.25435 0.96708 0.96408 0.98844 1.70052 1.30689 1.16828 1.38012 0.85928 0.80235 0.77765 0.80198 1.19010 1.22242 1.20907 1.20580 0.93626 0.95813 0.94498 1.21034 0.96559 1.01458 0.95477 1.21368 0.99881 0.97360 0.95817 1.21258 0.94131 1.00156 1.01102 1.21279 0.98417 0.99863 0.95109 1.21095 0.99492 0.99173 0.96433 1.22107 0.93315 0.93191 0.87043 0.90147 1.21728 1.00213 0.95654 1.01702 1.86561 1.80724 1.31496 1.39879 0.90487 0.94665 0.92958 0.88553 0.88758 0.75145 0.89186 0.88757 0.93936 0.86640 0.84184 0.83950 0.85171 0.88937 0.94902 0.92345 0.92642 0.75745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.80 71.98 0.71 -1.90 16 2 C -0.12 -1.85 5.29 30.59 0.16 -1.69 16 3 C 0.12 2.94 2.05 44.99 0.09 3.03 16 4 H 0.05 1.76 7.58 -2.39 -0.02 1.74 16 5 N -0.72 -19.13 4.42 -442.53 -1.96 -21.09 16 6 C 0.51 19.57 5.93 87.66 0.52 20.09 16 7 O -0.54 -27.26 12.11 -3.02 -0.04 -27.29 16 8 C -0.12 -4.37 4.95 29.85 0.15 -4.22 16 9 C 0.08 4.07 1.67 -12.29 -0.02 4.05 16 10 H 0.02 1.38 6.98 -2.39 -0.02 1.36 16 11 C -0.48 -26.30 6.37 25.60 0.16 -26.14 16 12 H 0.05 2.50 7.82 -2.91 -0.02 2.47 16 13 C 0.02 1.44 5.45 84.66 0.46 1.91 16 14 N -0.92 -56.85 12.87 21.45 0.28 -56.58 16 15 Si 0.93 47.54 29.54 68.60 2.03 49.57 16 16 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 17 H -0.30 -15.48 7.11 99.48 0.71 -14.77 16 18 H -0.28 -14.06 7.11 99.48 0.71 -13.35 16 19 C -0.04 -1.98 4.77 -19.87 -0.09 -2.07 16 20 C -0.13 -4.91 8.86 22.27 0.20 -4.71 16 21 C -0.13 -4.07 10.05 22.27 0.22 -3.85 16 22 C -0.15 -4.60 10.05 22.27 0.22 -4.38 16 23 C -0.13 -4.52 10.05 22.27 0.22 -4.29 16 24 C -0.14 -6.16 9.67 22.27 0.22 -5.94 16 25 C 0.10 2.63 3.41 30.60 0.10 2.74 16 26 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 27 C -0.14 -4.73 8.09 71.98 0.58 -4.15 16 28 O -0.58 -13.96 13.28 -148.98 -1.98 -15.93 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.98 7.75 -2.39 -0.02 0.96 16 32 H 0.10 0.95 8.14 -2.39 -0.02 0.94 16 33 H 0.09 1.06 6.54 -2.38 -0.02 1.04 16 34 H 0.41 7.72 8.60 -92.71 -0.80 6.92 16 35 H 0.09 2.86 8.14 -2.38 -0.02 2.84 16 36 H 0.09 3.15 7.78 -2.39 -0.02 3.13 16 37 H 0.25 15.18 8.31 -92.70 -0.77 14.41 16 38 H 0.12 4.28 7.76 -2.91 -0.02 4.26 16 39 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 40 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 41 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 42 H 0.09 4.22 7.95 -2.91 -0.02 4.20 16 43 H 0.03 1.38 7.53 -2.39 -0.02 1.36 16 44 H 0.06 2.20 5.78 -2.39 -0.01 2.18 16 45 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.39 5.22 7.26 -74.06 -0.54 4.68 16 Total: -1.00 -76.99 370.65 1.88 -75.11 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: -0.36 Total: 27.73 kcal Atomic # 6 Polarization: -35.43 SS G_CDS: 3.91 Total: -31.52 kcal Atomic # 7 Polarization: -75.99 SS G_CDS: -1.68 Total: -77.67 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -2.01 Total: -43.23 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal Total: -76.99 1.88 -75.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456277863.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.876 kcal (2) G-P(sol) polarization free energy of solvation -76.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds