Wall clock time and date at job start Fri Apr 10 2020 21:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47120 * 2 1 4 4 H 1.08999 * 109.47386 * 55.00083 * 3 2 1 5 5 N 1.46496 * 109.47279 * 294.99976 * 3 2 1 6 6 C 1.34771 * 120.00262 * 85.00330 * 5 3 2 7 7 O 1.21289 * 119.99887 * 359.97438 * 6 5 3 8 8 C 1.50699 * 120.00307 * 180.02562 * 6 5 3 9 9 C 1.53004 * 109.47276 * 179.97438 * 8 6 5 10 10 H 1.09006 * 109.47026 * 304.99946 * 9 8 6 11 11 C 1.50698 * 109.47097 * 64.99791 * 9 8 6 12 12 H 1.08004 * 119.99892 * 234.68174 * 11 9 8 13 13 C 1.37876 * 120.00362 * 54.68172 * 11 9 8 14 14 N 1.31514 * 119.99826 * 4.86966 * 13 11 9 15 15 Si 1.86803 * 120.00217 * 184.87441 * 13 11 9 16 16 H 1.48497 * 109.46957 * 59.99657 * 15 13 11 17 17 H 1.48499 * 109.46974 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46918 * 299.99615 * 15 13 11 19 19 C 1.50702 * 109.47237 * 184.99683 * 9 8 6 20 20 C 1.38233 * 119.99815 * 151.48548 * 19 9 8 21 21 C 1.38237 * 119.99648 * 179.79327 * 20 19 9 22 22 C 1.38229 * 120.00151 * 0.43380 * 21 20 19 23 23 C 1.38237 * 119.99941 * 359.82041 * 22 21 20 24 24 C 1.38229 * 120.00047 * 359.97238 * 23 22 21 25 25 C 1.53003 * 109.47219 * 174.99841 * 3 2 1 26 26 H 1.08995 * 109.47512 * 175.00243 * 25 3 2 27 27 C 1.53005 * 109.46865 * 295.00245 * 25 3 2 28 28 O 1.42900 * 109.46810 * 54.99988 * 25 3 2 29 29 H 1.08996 * 109.46853 * 300.00189 * 1 2 3 30 30 H 1.09004 * 109.46775 * 60.00156 * 1 2 3 31 31 H 1.08994 * 109.47100 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46853 * 239.99811 * 2 1 3 33 33 H 1.08996 * 109.46831 * 120.00222 * 2 1 3 34 34 H 0.97003 * 119.99922 * 264.99568 * 5 3 2 35 35 H 1.08994 * 109.47473 * 59.99553 * 8 6 5 36 36 H 1.09002 * 109.46812 * 299.99323 * 8 6 5 37 37 H 0.97000 * 120.00260 * 180.02562 * 14 13 11 38 38 H 1.08000 * 120.00199 * 359.97438 * 20 19 9 39 39 H 1.08010 * 119.99704 * 180.27426 * 21 20 19 40 40 H 1.08002 * 120.00108 * 179.83247 * 22 21 20 41 41 H 1.08001 * 120.00257 * 179.97438 * 23 22 21 42 42 H 1.07997 * 120.00160 * 180.02562 * 24 23 22 43 43 H 1.08997 * 109.47253 * 60.00219 * 27 25 3 44 44 H 1.09002 * 109.46743 * 179.97438 * 27 25 3 45 45 H 1.08988 * 109.47312 * 299.99564 * 27 25 3 46 46 H 0.96702 * 114.00512 * 299.99859 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 7 1.6525 2.0974 -1.2518 6 6 0.4353 2.6644 -1.3669 7 8 -0.3395 2.6320 -0.4343 8 6 0.0364 3.3377 -2.6548 9 6 -1.3828 3.8936 -2.5214 10 1 -2.0597 3.0936 -2.2215 11 6 -1.3998 4.9829 -1.4802 12 1 -2.0879 4.9254 -0.6498 13 6 -0.5369 6.0529 -1.5876 14 7 0.2334 6.1727 -2.6468 15 14 -0.4617 7.3323 -0.2286 16 1 -0.0664 6.6790 1.0450 17 1 0.5379 8.3719 -0.5822 18 1 -1.7967 7.9628 -0.0680 19 6 -1.8278 4.4580 -3.8461 20 6 -3.1703 4.4731 -4.1749 21 6 -3.5789 4.9947 -5.3881 22 6 -2.6441 5.4929 -6.2762 23 6 -1.3011 5.4729 -5.9496 24 6 -0.8929 4.9553 -4.7346 25 6 3.5649 1.4443 0.1258 26 1 3.9356 2.4654 0.0367 27 6 3.9649 0.8735 1.4878 28 8 4.1294 0.6403 -0.9121 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8899 34 1 2.2721 2.1232 -1.9977 35 1 0.0674 2.6131 -3.4684 36 1 0.7278 4.1530 -2.8678 37 1 0.8408 6.9252 -2.7222 38 1 -3.9003 4.0802 -3.4827 39 1 -4.6283 5.0106 -5.6432 40 1 -2.9631 5.8979 -7.2253 41 1 -0.5706 5.8618 -6.6436 42 1 0.1564 4.9401 -4.4792 43 1 3.5943 -0.1477 1.5769 44 1 5.0513 0.8744 1.5772 45 1 3.5344 1.4866 2.2794 46 1 3.8427 -0.2831 -0.8943 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456277864.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:37:20 Heat of formation + Delta-G solvation = -91.112246 kcal Electronic energy + Delta-G solvation = -26104.462641 eV Core-core repulsion = 22571.818138 eV Total energy + Delta-G solvation = -3532.644503 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.00991 -39.86233 -38.80586 -36.16889 -35.38241 -33.35189 -32.84062 -31.65702 -31.40225 -30.03973 -28.06923 -26.64968 -24.36792 -23.92148 -23.01156 -21.72687 -21.23824 -20.71761 -18.47672 -17.81881 -17.75707 -16.96141 -16.92552 -16.60647 -16.43578 -15.94412 -15.46941 -15.29244 -15.03999 -14.94515 -14.47254 -14.08667 -13.78941 -13.65179 -13.43366 -13.29586 -13.14258 -13.08104 -12.92211 -12.90038 -12.81567 -12.66289 -12.31061 -12.17316 -11.87115 -11.72072 -11.67246 -11.57673 -11.09542 -11.05494 -10.98552 -10.54884 -10.19244 -9.70474 -9.39861 -9.11199 -7.93249 -6.09034 0.89140 1.00591 1.36370 1.37473 1.45157 2.14078 2.44591 2.51510 3.20684 3.38109 3.48318 3.70741 3.89944 4.19137 4.22524 4.27798 4.34494 4.41035 4.46625 4.53126 4.57825 4.71297 4.76368 4.81401 4.83999 4.91089 4.92607 5.02498 5.09485 5.14462 5.15923 5.25508 5.31844 5.41843 5.50168 5.54812 5.64500 5.68445 5.82802 5.91950 5.95309 6.10247 6.37882 6.43514 6.58589 6.81049 6.83434 6.92031 7.52751 7.73075 8.95489 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014474 B = 0.004655 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.984149 B = 6014.036008 C = 6789.735470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.128 4.128 3 C 0.112 3.888 4 H 0.062 0.938 5 N -0.725 5.725 6 C 0.521 3.479 7 O -0.560 6.560 8 C -0.130 4.130 9 C 0.092 3.908 10 H 0.014 0.986 11 C -0.488 4.488 12 H 0.027 0.973 13 C 0.034 3.966 14 N -0.885 5.885 15 Si 0.928 3.072 16 H -0.289 1.289 17 H -0.277 1.277 18 H -0.283 1.283 19 C -0.051 4.051 20 C -0.153 4.153 21 C -0.140 4.140 22 C -0.149 4.149 23 C -0.147 4.147 24 C -0.081 4.081 25 C 0.105 3.895 26 H 0.090 0.910 27 C -0.178 4.178 28 O -0.567 6.567 29 H 0.035 0.965 30 H 0.032 0.968 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.406 0.594 35 H 0.068 0.932 36 H 0.119 0.881 37 H 0.261 0.739 38 H 0.102 0.898 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.054 -10.776 -0.716 12.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.166 4.166 3 C 0.006 3.994 4 H 0.080 0.920 5 N -0.379 5.379 6 C 0.310 3.690 7 O -0.438 6.438 8 C -0.170 4.170 9 C 0.073 3.927 10 H 0.032 0.968 11 C -0.526 4.526 12 H 0.045 0.955 13 C -0.166 4.166 14 N -0.524 5.524 15 Si 0.756 3.244 16 H -0.215 1.215 17 H -0.202 1.202 18 H -0.209 1.209 19 C -0.051 4.051 20 C -0.171 4.171 21 C -0.158 4.158 22 C -0.167 4.167 23 C -0.165 4.165 24 C -0.099 4.099 25 C 0.046 3.954 26 H 0.108 0.892 27 C -0.236 4.236 28 O -0.375 6.375 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.241 0.759 35 H 0.086 0.914 36 H 0.137 0.863 37 H 0.071 0.929 38 H 0.120 0.880 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 6.920 -10.099 -0.253 12.245 hybrid contribution -0.350 0.728 0.976 1.267 sum 6.570 -9.371 0.722 11.468 Atomic orbital electron populations 1.21700 0.96616 1.00329 1.01098 1.21954 0.95701 0.95392 1.03602 1.21722 0.95891 0.94200 0.87543 0.91982 1.45976 1.16594 1.58516 1.16792 1.20949 0.81225 0.76433 0.90389 1.90598 1.52566 1.58858 1.41766 1.21741 1.02311 0.99973 0.92989 1.17493 0.91773 0.93377 0.90103 0.96799 1.20888 1.18987 1.05950 1.06748 0.95476 1.25226 0.96016 0.98523 0.96789 1.69765 1.25130 1.30812 1.26667 0.86088 0.77542 0.79828 0.80899 1.21505 1.20186 1.20927 1.20332 0.93225 0.96922 0.94652 1.21081 0.95651 1.02908 0.97469 1.21157 0.99886 1.00456 0.94303 1.21193 0.93144 1.02092 1.00252 1.21367 0.96477 1.01376 0.97320 1.21311 1.00754 0.95938 0.91945 1.22037 0.89247 0.95692 0.88451 0.89229 1.22454 1.02899 1.02601 0.95621 1.86565 1.72084 1.25946 1.52947 0.94613 0.94927 0.92134 0.90041 0.88686 0.75872 0.91352 0.86348 0.92932 0.87953 0.85012 0.84605 0.85619 0.85317 0.90113 0.90689 0.91621 0.76282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 8.52 71.98 0.61 -3.54 16 2 C -0.13 -2.83 4.89 30.59 0.15 -2.68 16 3 C 0.11 3.02 2.13 44.99 0.10 3.11 16 4 H 0.06 2.07 7.58 -2.39 -0.02 2.05 16 5 N -0.73 -23.52 5.01 -442.55 -2.22 -25.73 16 6 C 0.52 22.10 6.15 87.66 0.54 22.63 16 7 O -0.56 -27.69 12.12 -3.06 -0.04 -27.73 16 8 C -0.13 -5.71 4.07 29.85 0.12 -5.59 16 9 C 0.09 4.59 1.97 -12.28 -0.02 4.56 16 10 H 0.01 0.72 7.91 -2.38 -0.02 0.70 16 11 C -0.49 -27.28 7.27 25.60 0.19 -27.10 16 12 H 0.03 1.63 7.82 -2.91 -0.02 1.60 16 13 C 0.03 1.82 5.12 84.65 0.43 2.25 16 14 N -0.88 -45.60 7.99 21.45 0.17 -45.43 16 15 Si 0.93 44.88 29.54 68.60 2.03 46.90 16 16 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 18 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 19 C -0.05 -2.37 4.69 -19.87 -0.09 -2.47 16 20 C -0.15 -6.61 9.71 22.27 0.22 -6.40 16 21 C -0.14 -5.14 10.05 22.27 0.22 -4.92 16 22 C -0.15 -5.17 10.05 22.27 0.22 -4.95 16 23 C -0.15 -5.58 10.05 22.27 0.22 -5.35 16 24 C -0.08 -3.55 7.45 22.27 0.17 -3.39 16 25 C 0.11 2.22 3.49 30.60 0.11 2.33 16 26 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 27 C -0.18 -2.81 9.30 71.98 0.67 -2.14 16 28 O -0.57 -11.02 12.98 -148.98 -1.93 -12.95 16 29 H 0.03 1.20 7.85 -2.39 -0.02 1.18 16 30 H 0.03 1.17 5.64 -2.39 -0.01 1.15 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.08 1.49 7.00 -2.39 -0.02 1.48 16 33 H 0.09 1.57 6.34 -2.39 -0.02 1.55 16 34 H 0.41 11.69 8.38 -92.71 -0.78 10.91 16 35 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.12 5.53 4.71 -2.39 -0.01 5.51 16 37 H 0.26 13.08 8.31 -92.71 -0.77 12.31 16 38 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 39 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 40 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 41 H 0.13 4.07 8.06 -2.91 -0.02 4.04 16 42 H 0.13 5.84 5.18 -2.91 -0.02 5.83 16 43 H 0.08 0.99 6.46 -2.39 -0.02 0.97 16 44 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.39 4.89 7.31 -74.06 -0.54 4.34 16 Total: -1.00 -64.94 357.28 1.54 -63.40 By element: Atomic # 1 Polarization: 35.50 SS G_CDS: -0.33 Total: 35.18 kcal Atomic # 6 Polarization: -37.48 SS G_CDS: 3.85 Total: -33.63 kcal Atomic # 7 Polarization: -69.12 SS G_CDS: -2.05 Total: -71.17 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -1.97 Total: -40.68 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -64.94 1.54 -63.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456277864.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.711 kcal (2) G-P(sol) polarization free energy of solvation -64.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds