Wall clock time and date at job start Fri Apr 10 2020 21:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47422 * 2 1 4 4 H 1.09009 * 109.47059 * 57.77297 * 3 2 1 5 5 C 1.52997 * 109.47917 * 177.77519 * 3 2 1 6 6 C 1.50707 * 109.46751 * 293.81293 * 5 3 2 7 7 O 1.21287 * 120.00162 * 353.86543 * 6 5 3 8 8 N 1.34779 * 119.99512 * 173.86635 * 6 5 3 9 9 C 1.37098 * 120.00266 * 0.02562 * 8 6 5 10 10 H 1.07996 * 119.99914 * 326.14475 * 9 8 6 11 11 C 1.38949 * 119.99771 * 146.14592 * 9 8 6 12 12 N 1.31404 * 120.00529 * 337.94783 * 11 9 8 13 13 Si 1.86806 * 119.99640 * 157.94895 * 11 9 8 14 14 H 1.48500 * 109.47187 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47117 * 120.00298 * 13 11 9 16 16 H 1.48504 * 109.47129 * 239.99958 * 13 11 9 17 17 C 1.46506 * 119.99334 * 179.97438 * 8 6 5 18 18 C 1.52999 * 109.46806 * 84.32035 * 17 8 6 19 19 O 1.42904 * 109.47216 * 64.99584 * 18 17 8 20 20 C 1.42893 * 114.00140 * 179.97438 * 19 18 17 21 21 C 1.50705 * 109.47052 * 297.77723 * 3 2 1 22 22 C 1.38237 * 119.99852 * 299.72469 * 21 3 2 23 23 C 1.38232 * 119.99751 * 179.79165 * 22 21 3 24 24 C 1.38235 * 120.00216 * 0.43311 * 23 22 21 25 25 C 1.38237 * 119.99758 * 359.82233 * 24 23 22 26 26 C 1.38227 * 120.00325 * 359.97045 * 25 24 23 27 27 H 1.08998 * 109.46883 * 177.42618 * 1 2 3 28 28 H 1.09000 * 109.47124 * 57.42511 * 1 2 3 29 29 H 1.09004 * 109.47106 * 297.42584 * 1 2 3 30 30 H 1.08998 * 109.47452 * 119.99958 * 2 1 3 31 31 H 1.09005 * 109.47263 * 239.99891 * 2 1 3 32 32 H 1.09004 * 109.46670 * 53.80539 * 5 3 2 33 33 H 1.08994 * 109.47799 * 173.81058 * 5 3 2 34 34 H 0.96998 * 120.00911 * 179.97438 * 12 11 9 35 35 H 1.09007 * 109.46549 * 204.31457 * 17 8 6 36 36 H 1.08989 * 109.47391 * 324.31641 * 17 8 6 37 37 H 1.08999 * 109.47078 * 184.99163 * 18 17 8 38 38 H 1.08995 * 109.46905 * 304.99788 * 18 17 8 39 39 H 1.09003 * 109.47343 * 300.00262 * 20 19 18 40 40 H 1.08996 * 109.47347 * 59.99942 * 20 19 18 41 41 H 1.08996 * 109.47353 * 180.02562 * 20 19 18 42 42 H 1.07999 * 119.99597 * 359.97438 * 22 21 3 43 43 H 1.08003 * 119.99834 * 180.27562 * 23 22 21 44 44 H 1.07998 * 119.99849 * 179.83650 * 24 23 22 45 45 H 1.08003 * 119.99579 * 180.02562 * 25 24 23 46 46 H 1.07998 * 120.00548 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6444 1.9677 0.8694 5 6 3.5690 1.4429 0.0560 6 6 4.0232 0.8863 1.3808 7 8 3.2087 0.6288 2.2418 8 7 5.3346 0.6746 1.6087 9 6 6.2553 0.9661 0.6356 10 1 6.0010 0.8333 -0.4056 11 6 7.5157 1.4324 0.9890 12 7 7.7019 2.0001 2.1593 13 14 8.9453 1.2522 -0.1998 14 1 8.4766 0.5834 -1.4400 15 1 9.4835 2.5952 -0.5340 16 1 10.0127 0.4340 0.4300 17 6 5.7762 0.1340 2.8967 18 6 5.6689 -1.3921 2.8730 19 8 6.5824 -1.9189 1.9086 20 6 6.5622 -3.3441 1.8067 21 6 1.5832 2.1368 -1.2571 22 6 1.9674 1.6517 -2.4933 23 6 1.5448 2.2860 -3.6464 24 6 0.7455 3.4108 -3.5634 25 6 0.3656 3.8989 -2.3271 26 6 0.7846 3.2621 -1.1740 27 1 -0.3633 -1.0266 -0.0461 28 1 -0.3633 0.5533 -0.8660 29 1 -0.3633 0.4734 0.9122 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.9622 0.8255 -0.7516 33 1 3.9364 2.4631 -0.0546 34 1 8.5818 2.3253 2.4062 35 1 6.8120 0.4226 3.0759 36 1 5.1457 0.5302 3.6925 37 1 5.9124 -1.7888 3.8586 38 1 4.6523 -1.6807 2.6061 39 1 6.8244 -3.7810 2.7703 40 1 5.5642 -3.6736 1.5180 41 1 7.2829 -3.6649 1.0546 42 1 2.5953 0.7753 -2.5580 43 1 1.8414 1.9044 -4.6123 44 1 0.4175 3.9079 -4.4643 45 1 -0.2593 4.7774 -2.2623 46 1 0.4875 3.6433 -0.2082 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457186241.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:37:26 Heat of formation + Delta-G solvation = -65.736709 kcal Electronic energy + Delta-G solvation = -25906.166844 eV Core-core repulsion = 22374.622706 eV Total energy + Delta-G solvation = -3531.544137 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.58213 -38.50798 -36.99972 -35.39633 -34.39535 -31.52679 -30.72351 -30.64045 -29.89452 -28.43305 -25.82658 -24.81967 -24.03907 -22.67193 -22.05472 -21.69249 -19.60862 -18.86422 -16.94312 -16.64961 -16.04381 -15.43277 -15.34248 -14.99704 -14.74514 -14.39354 -14.34416 -14.07611 -13.98284 -13.80003 -13.29437 -13.16544 -12.71097 -12.53193 -12.27922 -12.02051 -11.97349 -11.52965 -11.33017 -11.19747 -11.09164 -11.02214 -10.96568 -10.81713 -10.55837 -10.43307 -10.29350 -10.14271 -10.06540 -9.90407 -9.08666 -8.93738 -8.72734 -8.49698 -8.26296 -7.47577 -6.30072 -3.92771 1.58107 1.59491 3.18647 3.29770 3.33634 3.95676 3.99320 4.20404 4.52753 4.74918 5.03159 5.06398 5.13867 5.20413 5.30070 5.39861 5.58942 5.62126 5.67296 5.72453 5.74282 5.75281 5.95468 5.99706 6.02077 6.07766 6.09322 6.14712 6.23897 6.28039 6.37667 6.38967 6.48126 6.49664 6.63588 6.64313 6.67669 6.72725 6.81910 6.92211 7.04211 7.22080 7.33095 7.53763 7.84289 8.03233 8.43483 9.17515 9.59072 10.00154 10.72798 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.013575 B = 0.004650 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.164455 B = 6020.521001 C = 7028.115566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C -0.035 4.035 4 H 0.083 0.917 5 C -0.108 4.108 6 C 0.467 3.533 7 O -0.610 6.610 8 N -0.429 5.429 9 C -0.321 4.321 10 H 0.088 0.912 11 C 0.047 3.953 12 N -0.864 5.864 13 Si 0.913 3.087 14 H -0.269 1.269 15 H -0.285 1.285 16 H -0.280 1.280 17 C 0.113 3.887 18 C 0.053 3.947 19 O -0.365 6.365 20 C 0.031 3.969 21 C -0.057 4.057 22 C -0.114 4.114 23 C -0.120 4.120 24 C -0.135 4.135 25 C -0.122 4.122 26 C -0.119 4.119 27 H 0.045 0.955 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.267 0.733 35 H 0.117 0.883 36 H 0.068 0.932 37 H 0.037 0.963 38 H 0.041 0.959 39 H 0.029 0.971 40 H 0.031 0.969 41 H 0.077 0.923 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.564 -2.350 -6.546 11.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C -0.053 4.053 4 H 0.101 0.899 5 C -0.148 4.148 6 C 0.257 3.743 7 O -0.497 6.497 8 N -0.146 5.146 9 C -0.449 4.449 10 H 0.106 0.894 11 C -0.158 4.158 12 N -0.501 5.501 13 Si 0.740 3.260 14 H -0.193 1.193 15 H -0.212 1.212 16 H -0.206 1.206 17 C -0.011 4.011 18 C -0.025 4.025 19 O -0.283 6.283 20 C -0.066 4.066 21 C -0.057 4.057 22 C -0.132 4.132 23 C -0.138 4.138 24 C -0.153 4.153 25 C -0.140 4.140 26 C -0.137 4.137 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.134 0.866 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.050 0.950 41 H 0.095 0.905 42 H 0.139 0.861 43 H 0.135 0.865 44 H 0.133 0.867 45 H 0.134 0.866 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.645 -2.273 -6.122 10.834 hybrid contribution 0.797 -0.299 -0.472 0.974 sum -7.847 -2.572 -6.594 10.568 Atomic orbital electron populations 1.21738 0.96599 1.00639 1.01330 1.21601 0.95134 0.95822 1.02616 1.20024 0.95174 0.96048 0.94098 0.89882 1.21390 0.93554 1.02701 0.97182 1.20354 0.83133 0.81501 0.89320 1.90485 1.53446 1.58126 1.47679 1.43375 1.04358 1.53342 1.13531 1.19334 0.93657 1.43295 0.88581 0.89437 1.25199 0.99376 0.94336 0.96860 1.69907 1.23527 1.34546 1.22158 0.86107 0.81503 0.77694 0.80677 1.19308 1.21157 1.20568 1.21474 1.04451 0.88202 0.87005 1.23038 0.92045 0.97155 0.90250 1.88131 1.61473 1.18276 1.60438 1.22637 1.00386 0.83560 1.00052 1.20047 0.95713 0.94829 0.95156 1.21057 0.99917 1.00227 0.91964 1.21097 0.98367 0.96182 0.98197 1.21040 0.99614 0.97240 0.97372 1.21074 1.00399 0.99814 0.92683 1.21104 0.98482 0.95735 0.98368 0.93559 0.93247 0.92953 0.89826 0.92969 0.90392 0.89725 0.92250 0.86586 0.91406 0.94454 0.94088 0.95207 0.95011 0.90479 0.86100 0.86519 0.86724 0.86580 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.74 37.16 0.36 -1.70 16 2 C -0.11 -1.88 5.07 -26.73 -0.14 -2.01 16 3 C -0.03 -0.59 1.71 -91.77 -0.16 -0.75 16 4 H 0.08 1.53 7.56 -51.92 -0.39 1.14 16 5 C -0.11 -2.15 3.68 -27.88 -0.10 -2.25 16 6 C 0.47 11.03 7.18 -10.98 -0.08 10.95 16 7 O -0.61 -15.17 13.97 5.55 0.08 -15.10 16 8 N -0.43 -10.69 2.51 -114.81 -0.29 -10.98 16 9 C -0.32 -8.17 8.53 -14.93 -0.13 -8.29 16 10 H 0.09 2.16 6.80 -52.49 -0.36 1.81 16 11 C 0.05 1.21 4.92 -17.47 -0.09 1.12 16 12 N -0.86 -22.97 11.32 55.50 0.63 -22.34 16 13 Si 0.91 20.18 29.61 -169.99 -5.03 15.15 16 14 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 15 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 C 0.11 2.70 5.28 -4.04 -0.02 2.68 16 18 C 0.05 1.11 6.24 37.16 0.23 1.34 16 19 O -0.37 -7.81 10.45 -35.23 -0.37 -8.18 16 20 C 0.03 0.50 11.01 101.05 1.11 1.61 16 21 C -0.06 -0.87 3.58 -104.62 -0.37 -1.24 16 22 C -0.11 -1.61 8.75 -39.58 -0.35 -1.96 16 23 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 24 C -0.13 -1.60 10.05 -39.58 -0.40 -2.00 16 25 C -0.12 -1.50 10.05 -39.59 -0.40 -1.90 16 26 C -0.12 -1.66 9.67 -39.58 -0.38 -2.04 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.67 7.20 -51.93 -0.37 0.30 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.60 6.25 -51.93 -0.32 1.27 16 31 H 0.05 0.81 7.33 -51.93 -0.38 0.43 16 32 H 0.08 1.50 6.79 -51.93 -0.35 1.14 16 33 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 34 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 35 H 0.12 3.00 5.34 -51.92 -0.28 2.72 16 36 H 0.07 1.63 7.60 -51.94 -0.39 1.24 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.12 1.66 7.17 -52.49 -0.38 1.29 16 43 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 44 H 0.11 1.09 8.06 -52.49 -0.42 0.66 16 45 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 46 H 0.12 1.55 7.95 -52.49 -0.42 1.13 16 LS Contribution 372.27 15.07 5.61 5.61 Total: -1.00 -28.94 372.27 -8.10 -37.04 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -7.43 Total: 7.16 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -1.30 Total: -8.35 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.34 Total: -33.32 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.29 Total: -23.28 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.15 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.94 -8.10 -37.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457186241.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.698 kcal (2) G-P(sol) polarization free energy of solvation -28.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds