Wall clock time and date at job start Fri Apr 10 2020 21:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47023 * 2 1 4 4 H 1.08993 * 109.47104 * 304.99702 * 3 2 1 5 5 C 1.53001 * 109.46770 * 184.99685 * 3 2 1 6 6 C 1.50693 * 109.47189 * 65.00345 * 5 3 2 7 7 O 1.21296 * 120.00068 * 6.06117 * 6 5 3 8 8 N 1.34779 * 120.00350 * 186.06569 * 6 5 3 9 9 C 1.37108 * 119.99484 * 5.25373 * 8 6 5 10 10 H 1.07994 * 119.99692 * 321.43933 * 9 8 6 11 11 C 1.38947 * 119.99809 * 141.44104 * 9 8 6 12 12 N 1.31412 * 119.99861 * 342.11166 * 11 9 8 13 13 Si 1.86790 * 119.99933 * 162.11720 * 11 9 8 14 14 H 1.48498 * 109.47387 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47629 * 119.99850 * 13 11 9 16 16 H 1.48507 * 109.47208 * 239.99878 * 13 11 9 17 17 C 1.46493 * 120.00264 * 185.25372 * 8 6 5 18 18 C 1.53000 * 109.47041 * 90.00181 * 17 8 6 19 19 O 1.42903 * 109.47210 * 64.99760 * 18 17 8 20 20 C 1.42903 * 113.99767 * 180.02562 * 19 18 17 21 21 C 1.50705 * 109.46952 * 64.99679 * 3 2 1 22 22 C 1.38234 * 119.99801 * 59.72952 * 21 3 2 23 23 C 1.38239 * 119.99793 * 179.80658 * 22 21 3 24 24 C 1.38235 * 119.99779 * 0.39756 * 23 22 21 25 25 C 1.38236 * 120.00189 * 359.85504 * 24 23 22 26 26 C 1.38230 * 120.00090 * 239.99597 * 21 3 2 27 27 H 1.08996 * 109.47081 * 60.00514 * 1 2 3 28 28 H 1.09004 * 109.46990 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47495 * 299.99915 * 1 2 3 30 30 H 1.09002 * 109.47274 * 239.99853 * 2 1 3 31 31 H 1.09006 * 109.46616 * 120.00081 * 2 1 3 32 32 H 1.09000 * 109.46556 * 184.99903 * 5 3 2 33 33 H 1.08995 * 109.47243 * 304.99806 * 5 3 2 34 34 H 0.97001 * 120.00020 * 185.01811 * 12 11 9 35 35 H 1.08997 * 109.46973 * 209.99848 * 17 8 6 36 36 H 1.08998 * 109.47104 * 329.99767 * 17 8 6 37 37 H 1.09002 * 109.47249 * 185.00305 * 18 17 8 38 38 H 1.09001 * 109.47169 * 304.99708 * 18 17 8 39 39 H 1.08990 * 109.47560 * 59.99848 * 20 19 18 40 40 H 1.09000 * 109.46738 * 180.02562 * 20 19 18 41 41 H 1.09006 * 109.46885 * 299.99837 * 20 19 18 42 42 H 1.08000 * 120.00574 * 359.97438 * 22 21 3 43 43 H 1.07994 * 120.00221 * 180.22921 * 23 22 21 44 44 H 1.08002 * 119.99974 * 179.83220 * 24 23 22 45 45 H 1.08003 * 120.00119 * 179.97438 * 25 24 23 46 46 H 1.08002 * 119.99864 * 359.97438 * 26 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1256 6 6 3.9590 0.8821 -1.4671 7 8 3.1063 0.6187 -2.2885 8 7 5.2590 0.6720 -1.7542 9 6 6.2141 0.8672 -0.7901 10 1 6.1232 1.6923 -0.0992 11 6 7.2989 0.0034 -0.7019 12 7 7.2488 -1.1755 -1.2803 13 14 8.8284 0.5180 0.2388 14 1 8.6337 1.8822 0.7922 15 1 9.0711 -0.4372 1.3497 16 1 9.9967 0.5183 -0.6779 17 6 5.6514 0.2350 -3.0962 18 6 5.9202 1.4597 -3.9730 19 8 7.0485 2.1727 -3.4625 20 6 7.3859 3.3411 -4.2130 21 6 1.6412 2.1163 1.2877 22 6 2.0720 1.6048 2.4976 23 6 1.7095 2.2252 3.6786 24 6 0.9095 3.3521 3.6500 25 6 0.4744 3.8605 2.4404 26 6 0.8402 3.2425 1.2593 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8901 32 1 3.9355 2.4655 -0.0365 33 1 3.9954 0.8311 0.6660 34 1 7.9751 -1.8068 -1.1584 35 1 6.5553 -0.3707 -3.0313 36 1 4.8482 -0.3568 -3.5350 37 1 6.1254 1.1377 -4.9940 38 1 5.0458 2.1104 -3.9662 39 1 6.5418 4.0306 -4.2108 40 1 8.2521 3.8250 -3.7619 41 1 7.6214 3.0583 -5.2391 42 1 2.6940 0.7222 2.5201 43 1 2.0491 1.8278 4.6236 44 1 0.6240 3.8353 4.5728 45 1 -0.1510 4.7408 2.4181 46 1 0.5004 3.6397 0.3142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457186243.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:37:31 Heat of formation + Delta-G solvation = -66.057185 kcal Electronic energy + Delta-G solvation = -25852.472798 eV Core-core repulsion = 22320.914763 eV Total energy + Delta-G solvation = -3531.558034 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.56832 -38.49294 -37.00337 -35.36086 -34.36349 -31.50802 -30.72114 -30.61016 -29.87374 -28.41812 -25.81565 -24.79765 -24.04192 -22.66561 -22.01184 -21.64543 -19.61691 -18.85428 -16.92243 -16.61737 -16.03872 -15.38904 -15.38520 -15.01108 -14.68855 -14.37284 -14.33347 -14.13406 -13.92871 -13.74402 -13.36237 -13.15383 -12.68520 -12.34030 -12.28904 -12.14050 -11.94295 -11.46608 -11.32302 -11.13528 -11.12226 -10.98248 -10.93214 -10.81344 -10.55990 -10.40067 -10.26955 -10.09115 -10.01893 -9.94675 -9.09617 -8.94668 -8.72473 -8.48472 -8.26431 -7.38477 -6.25847 -3.95038 1.58184 1.59607 3.18829 3.29808 3.33380 3.94497 3.99575 4.21977 4.54080 4.76321 5.04162 5.07316 5.14019 5.21847 5.32252 5.42724 5.64147 5.65792 5.67941 5.73465 5.74560 5.76413 5.95524 5.99384 6.05276 6.09359 6.11197 6.13427 6.25263 6.30898 6.36250 6.42133 6.52379 6.58164 6.59677 6.65100 6.68596 6.75915 6.81275 6.98160 7.08141 7.22632 7.34564 7.58086 7.87484 8.09102 8.45780 9.19201 9.59573 10.01334 10.77328 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.004475 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.879630 B = 6255.560101 C = 6846.272409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C -0.033 4.033 4 H 0.080 0.920 5 C -0.110 4.110 6 C 0.472 3.528 7 O -0.608 6.608 8 N -0.431 5.431 9 C -0.319 4.319 10 H 0.085 0.915 11 C 0.050 3.950 12 N -0.869 5.869 13 Si 0.916 3.084 14 H -0.269 1.269 15 H -0.285 1.285 16 H -0.280 1.280 17 C 0.109 3.891 18 C 0.054 3.946 19 O -0.362 6.362 20 C 0.030 3.970 21 C -0.058 4.058 22 C -0.113 4.113 23 C -0.120 4.120 24 C -0.135 4.135 25 C -0.123 4.123 26 C -0.120 4.120 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.267 0.733 35 H 0.116 0.884 36 H 0.071 0.929 37 H 0.038 0.962 38 H 0.036 0.964 39 H 0.031 0.969 40 H 0.077 0.923 41 H 0.029 0.971 42 H 0.123 0.877 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.197 6.554 3.936 10.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C -0.052 4.052 4 H 0.098 0.902 5 C -0.150 4.150 6 C 0.261 3.739 7 O -0.496 6.496 8 N -0.149 5.149 9 C -0.447 4.447 10 H 0.103 0.897 11 C -0.155 4.155 12 N -0.507 5.507 13 Si 0.743 3.257 14 H -0.194 1.194 15 H -0.211 1.211 16 H -0.206 1.206 17 C -0.015 4.015 18 C -0.023 4.023 19 O -0.280 6.280 20 C -0.067 4.067 21 C -0.058 4.058 22 C -0.131 4.131 23 C -0.138 4.138 24 C -0.153 4.153 25 C -0.141 4.141 26 C -0.138 4.138 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.134 0.866 36 H 0.089 0.911 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.049 0.951 40 H 0.095 0.905 41 H 0.048 0.952 42 H 0.141 0.859 43 H 0.135 0.865 44 H 0.133 0.867 45 H 0.134 0.866 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.322 6.213 3.614 10.260 hybrid contribution 0.883 0.493 0.230 1.038 sum -6.438 6.706 3.844 10.060 Atomic orbital electron populations 1.21727 0.96691 1.00698 1.01088 1.21626 0.95027 0.95631 1.03030 1.20007 0.95413 0.96387 0.93395 0.90173 1.21397 0.93981 1.01907 0.97743 1.20392 0.82773 0.81971 0.88718 1.90487 1.50076 1.57774 1.51228 1.43320 1.04201 1.58305 1.09066 1.19300 1.01962 1.11735 1.11693 0.89744 1.25262 0.99317 0.94088 0.96855 1.69781 1.32891 1.05059 1.42944 0.86056 0.82049 0.78803 0.78774 1.19352 1.21134 1.20616 1.21498 1.03066 0.93943 0.82969 1.23040 0.87773 0.95210 0.96323 1.88165 1.48655 1.38323 1.52859 1.22643 0.99742 0.88920 0.95392 1.20062 0.95686 0.94737 0.95332 1.21103 0.99867 1.00181 0.91899 1.21114 0.98473 0.96177 0.98049 1.21041 0.99435 0.97215 0.97599 1.21064 1.00456 0.99849 0.92694 1.21087 0.98727 0.95956 0.98053 0.93033 0.93482 0.93446 0.89489 0.92782 0.90646 0.89361 0.92220 0.86608 0.91098 0.94430 0.94526 0.95062 0.90480 0.95237 0.85857 0.86467 0.86740 0.86636 0.86379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.73 37.16 0.36 -1.76 16 2 C -0.12 -1.98 5.09 -26.73 -0.14 -2.12 16 3 C -0.03 -0.57 1.68 -91.77 -0.15 -0.73 16 4 H 0.08 1.45 7.60 -51.93 -0.39 1.06 16 5 C -0.11 -2.19 3.56 -27.89 -0.10 -2.28 16 6 C 0.47 11.14 7.18 -10.99 -0.08 11.06 16 7 O -0.61 -15.19 13.80 5.54 0.08 -15.11 16 8 N -0.43 -10.74 2.50 -114.82 -0.29 -11.03 16 9 C -0.32 -8.10 8.00 -14.93 -0.12 -8.22 16 10 H 0.08 2.10 7.27 -52.49 -0.38 1.72 16 11 C 0.05 1.27 5.04 -17.47 -0.09 1.18 16 12 N -0.87 -23.10 11.31 55.50 0.63 -22.47 16 13 Si 0.92 20.22 29.59 -169.99 -5.03 15.19 16 14 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 C 0.11 2.61 5.47 -4.05 -0.02 2.59 16 18 C 0.05 1.14 6.28 37.16 0.23 1.37 16 19 O -0.36 -7.79 10.18 -35.23 -0.36 -8.15 16 20 C 0.03 0.49 11.01 101.05 1.11 1.60 16 21 C -0.06 -0.88 3.76 -104.62 -0.39 -1.27 16 22 C -0.11 -1.62 8.71 -39.58 -0.34 -1.97 16 23 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 24 C -0.13 -1.60 10.05 -39.58 -0.40 -2.00 16 25 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 26 C -0.12 -1.65 9.67 -39.59 -0.38 -2.03 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.66 7.38 -51.93 -0.38 0.28 16 30 H 0.09 1.76 6.10 -51.93 -0.32 1.44 16 31 H 0.05 0.89 7.21 -51.93 -0.37 0.52 16 32 H 0.08 1.47 8.06 -51.93 -0.42 1.05 16 33 H 0.09 1.77 7.28 -51.93 -0.38 1.39 16 34 H 0.27 6.75 8.32 -40.82 -0.34 6.41 16 35 H 0.12 3.00 5.45 -51.93 -0.28 2.72 16 36 H 0.07 1.70 7.36 -51.93 -0.38 1.32 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.12 1.76 7.13 -52.49 -0.37 1.39 16 43 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 44 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 45 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 46 H 0.12 1.49 7.95 -52.49 -0.42 1.08 16 LS Contribution 372.27 15.07 5.61 5.61 Total: -1.00 -28.91 372.27 -8.13 -37.04 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -7.47 Total: 7.32 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -1.30 Total: -8.40 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: 0.34 Total: -33.50 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.28 Total: -23.26 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.91 -8.13 -37.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457186243.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.014 kcal (2) G-P(sol) polarization free energy of solvation -28.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds