Wall clock time and date at job start Fri Apr 10 2020 21:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47023 * 2 1 4 4 H 1.08993 * 109.47104 * 304.99702 * 3 2 1 5 5 C 1.53001 * 109.46770 * 184.99685 * 3 2 1 6 6 C 1.50693 * 109.47189 * 65.00345 * 5 3 2 7 7 O 1.21296 * 120.00068 * 6.06117 * 6 5 3 8 8 N 1.34779 * 120.00350 * 186.06569 * 6 5 3 9 9 C 1.37108 * 119.99484 * 5.25373 * 8 6 5 10 10 H 1.07994 * 119.99692 * 321.43933 * 9 8 6 11 11 C 1.38947 * 119.99809 * 141.44104 * 9 8 6 12 12 N 1.31412 * 119.99861 * 342.11166 * 11 9 8 13 13 Si 1.86790 * 119.99933 * 162.11720 * 11 9 8 14 14 H 1.48498 * 109.47387 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47629 * 119.99850 * 13 11 9 16 16 H 1.48507 * 109.47208 * 239.99878 * 13 11 9 17 17 C 1.46493 * 120.00264 * 185.25372 * 8 6 5 18 18 C 1.53000 * 109.47041 * 90.00181 * 17 8 6 19 19 O 1.42903 * 109.47210 * 64.99760 * 18 17 8 20 20 C 1.42903 * 113.99767 * 180.02562 * 19 18 17 21 21 C 1.50705 * 109.46952 * 64.99679 * 3 2 1 22 22 C 1.38234 * 119.99801 * 59.72952 * 21 3 2 23 23 C 1.38239 * 119.99793 * 179.80658 * 22 21 3 24 24 C 1.38235 * 119.99779 * 0.39756 * 23 22 21 25 25 C 1.38236 * 120.00189 * 359.85504 * 24 23 22 26 26 C 1.38230 * 120.00090 * 239.99597 * 21 3 2 27 27 H 1.08996 * 109.47081 * 60.00514 * 1 2 3 28 28 H 1.09004 * 109.46990 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47495 * 299.99915 * 1 2 3 30 30 H 1.09002 * 109.47274 * 239.99853 * 2 1 3 31 31 H 1.09006 * 109.46616 * 120.00081 * 2 1 3 32 32 H 1.09000 * 109.46556 * 184.99903 * 5 3 2 33 33 H 1.08995 * 109.47243 * 304.99806 * 5 3 2 34 34 H 0.97001 * 120.00020 * 185.01811 * 12 11 9 35 35 H 1.08997 * 109.46973 * 209.99848 * 17 8 6 36 36 H 1.08998 * 109.47104 * 329.99767 * 17 8 6 37 37 H 1.09002 * 109.47249 * 185.00305 * 18 17 8 38 38 H 1.09001 * 109.47169 * 304.99708 * 18 17 8 39 39 H 1.08990 * 109.47560 * 59.99848 * 20 19 18 40 40 H 1.09000 * 109.46738 * 180.02562 * 20 19 18 41 41 H 1.09006 * 109.46885 * 299.99837 * 20 19 18 42 42 H 1.08000 * 120.00574 * 359.97438 * 22 21 3 43 43 H 1.07994 * 120.00221 * 180.22921 * 23 22 21 44 44 H 1.08002 * 119.99974 * 179.83220 * 24 23 22 45 45 H 1.08003 * 120.00119 * 179.97438 * 25 24 23 46 46 H 1.08002 * 119.99864 * 359.97438 * 26 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1256 6 6 3.9590 0.8821 -1.4671 7 8 3.1063 0.6187 -2.2885 8 7 5.2590 0.6720 -1.7542 9 6 6.2141 0.8672 -0.7901 10 1 6.1232 1.6923 -0.0992 11 6 7.2989 0.0034 -0.7019 12 7 7.2488 -1.1755 -1.2803 13 14 8.8284 0.5180 0.2388 14 1 8.6337 1.8822 0.7922 15 1 9.0711 -0.4372 1.3497 16 1 9.9967 0.5183 -0.6779 17 6 5.6514 0.2350 -3.0962 18 6 5.9202 1.4597 -3.9730 19 8 7.0485 2.1727 -3.4625 20 6 7.3859 3.3411 -4.2130 21 6 1.6412 2.1163 1.2877 22 6 2.0720 1.6048 2.4976 23 6 1.7095 2.2252 3.6786 24 6 0.9095 3.3521 3.6500 25 6 0.4744 3.8605 2.4404 26 6 0.8402 3.2425 1.2593 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8901 32 1 3.9355 2.4655 -0.0365 33 1 3.9954 0.8311 0.6660 34 1 7.9751 -1.8068 -1.1584 35 1 6.5553 -0.3707 -3.0313 36 1 4.8482 -0.3568 -3.5350 37 1 6.1254 1.1377 -4.9940 38 1 5.0458 2.1104 -3.9662 39 1 6.5418 4.0306 -4.2108 40 1 8.2521 3.8250 -3.7619 41 1 7.6214 3.0583 -5.2391 42 1 2.6940 0.7222 2.5201 43 1 2.0491 1.8278 4.6236 44 1 0.6240 3.8353 4.5728 45 1 -0.1510 4.7408 2.4181 46 1 0.5004 3.6397 0.3142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457186243.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:37:30 Heat of formation + Delta-G solvation = -80.209681 kcal Electronic energy + Delta-G solvation = -25853.086496 eV Core-core repulsion = 22320.914763 eV Total energy + Delta-G solvation = -3532.171732 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.98093 -40.00978 -38.59190 -36.88505 -36.08216 -33.45999 -32.00004 -31.71936 -31.30042 -29.90991 -27.28197 -26.62140 -25.53170 -23.77213 -23.35250 -23.08677 -21.11385 -20.55071 -18.60294 -18.13357 -17.46700 -17.12899 -16.89207 -16.43052 -16.11671 -15.97971 -15.85621 -15.64787 -15.29567 -15.11586 -14.79879 -14.24300 -14.15260 -13.76429 -13.61003 -13.54893 -13.33273 -13.16902 -12.91488 -12.86018 -12.61540 -12.51644 -12.48981 -12.13723 -12.02092 -11.92257 -11.84510 -11.66908 -11.44461 -11.37616 -10.98784 -10.52505 -10.22128 -9.72374 -9.48662 -9.34021 -8.20577 -5.95308 0.55300 0.59510 1.42296 1.49754 1.60173 2.07561 2.37952 2.91129 3.00640 3.07232 3.24091 3.85589 3.87651 4.21508 4.24043 4.25406 4.26961 4.31561 4.37487 4.40785 4.50418 4.53532 4.59752 4.63062 4.67972 4.69464 4.75197 4.77484 4.80686 4.84960 4.99787 5.07387 5.13975 5.17399 5.26093 5.27104 5.39512 5.43519 5.50170 5.59863 5.69519 5.71595 5.89163 6.10542 6.22223 6.42917 6.49200 7.22661 7.67831 8.09240 8.83115 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.004475 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.879630 B = 6255.560101 C = 6846.272409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 C -0.022 4.022 4 H 0.067 0.933 5 C -0.099 4.099 6 C 0.461 3.539 7 O -0.627 6.627 8 N -0.444 5.444 9 C -0.327 4.327 10 H 0.087 0.913 11 C 0.010 3.990 12 N -0.900 5.900 13 Si 0.976 3.024 14 H -0.261 1.261 15 H -0.280 1.280 16 H -0.283 1.283 17 C 0.107 3.893 18 C 0.066 3.934 19 O -0.395 6.395 20 C 0.024 3.976 21 C -0.074 4.074 22 C -0.128 4.128 23 C -0.123 4.123 24 C -0.131 4.131 25 C -0.121 4.121 26 C -0.130 4.130 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.269 0.731 35 H 0.096 0.904 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.030 0.970 39 H 0.040 0.960 40 H 0.093 0.907 41 H 0.051 0.949 42 H 0.115 0.885 43 H 0.138 0.862 44 H 0.145 0.855 45 H 0.143 0.857 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.569 8.482 5.576 12.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.151 4.151 3 C -0.040 4.040 4 H 0.085 0.915 5 C -0.139 4.139 6 C 0.252 3.748 7 O -0.516 6.516 8 N -0.162 5.162 9 C -0.455 4.455 10 H 0.104 0.896 11 C -0.192 4.192 12 N -0.538 5.538 13 Si 0.801 3.199 14 H -0.185 1.185 15 H -0.205 1.205 16 H -0.209 1.209 17 C -0.017 4.017 18 C -0.011 4.011 19 O -0.314 6.314 20 C -0.072 4.072 21 C -0.074 4.074 22 C -0.146 4.146 23 C -0.141 4.141 24 C -0.148 4.148 25 C -0.139 4.139 26 C -0.148 4.148 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.111 0.889 41 H 0.069 0.931 42 H 0.133 0.867 43 H 0.156 0.844 44 H 0.163 0.837 45 H 0.161 0.839 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.700 8.153 5.251 12.383 hybrid contribution 0.968 -0.081 -0.297 1.016 sum -6.732 8.072 4.954 11.620 Atomic orbital electron populations 1.21631 0.94527 1.01570 1.01490 1.21542 0.96942 0.95386 1.01205 1.19823 0.93195 0.96480 0.94548 0.91497 1.21330 0.96099 1.01354 0.95097 1.21058 0.82296 0.81550 0.89894 1.90461 1.50444 1.58464 1.52198 1.43545 1.04678 1.58512 1.09448 1.19475 1.02298 1.11779 1.11902 0.89579 1.25992 1.01554 0.93871 0.97789 1.69892 1.33676 1.05988 1.44265 0.85130 0.78379 0.78782 0.77573 1.18509 1.20549 1.20900 1.21425 1.01545 0.95277 0.83455 1.22808 0.87791 0.93849 0.96695 1.88091 1.48481 1.40206 1.54618 1.22887 1.00691 0.87373 0.96243 1.19836 0.97501 0.95836 0.94210 1.21146 1.00466 1.00472 0.92525 1.21391 0.98256 0.96339 0.98128 1.21442 0.98114 0.96510 0.98771 1.21400 1.00101 1.00327 0.92068 1.21238 0.98676 0.95629 0.99269 0.93232 0.92395 0.92303 0.93200 0.92559 0.90399 0.89891 0.92150 0.88619 0.92380 0.91769 0.95143 0.94170 0.88887 0.93090 0.86701 0.84406 0.83713 0.83898 0.85870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.92 9.73 71.98 0.70 -3.22 16 2 C -0.11 -4.00 5.09 30.60 0.16 -3.85 16 3 C -0.02 -0.76 1.68 -11.54 -0.02 -0.78 16 4 H 0.07 2.50 7.60 -2.39 -0.02 2.48 16 5 C -0.10 -4.04 3.56 29.85 0.11 -3.93 16 6 C 0.46 22.63 7.18 87.65 0.63 23.26 16 7 O -0.63 -32.69 13.80 -3.08 -0.04 -32.73 16 8 N -0.44 -22.83 2.50 -635.56 -1.59 -24.41 16 9 C -0.33 -16.88 8.00 84.04 0.67 -16.21 16 10 H 0.09 4.33 7.27 -2.91 -0.02 4.31 16 11 C 0.01 0.50 5.04 84.93 0.43 0.93 16 12 N -0.90 -48.93 11.31 21.66 0.24 -48.68 16 13 Si 0.98 41.43 29.59 68.60 2.03 43.46 16 14 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 15 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 16 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 17 C 0.11 5.30 5.47 86.38 0.47 5.77 16 18 C 0.07 2.78 6.28 71.98 0.45 3.24 16 19 O -0.39 -16.83 10.18 -148.98 -1.52 -18.35 16 20 C 0.02 0.75 11.01 113.37 1.25 1.99 16 21 C -0.07 -2.19 3.76 -19.87 -0.07 -2.26 16 22 C -0.13 -3.58 8.71 22.27 0.19 -3.38 16 23 C -0.12 -2.82 10.05 22.27 0.22 -2.60 16 24 C -0.13 -2.63 10.05 22.27 0.22 -2.41 16 25 C -0.12 -2.57 10.05 22.27 0.22 -2.34 16 26 C -0.13 -3.36 9.67 22.27 0.22 -3.15 16 27 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 29 H 0.06 1.58 7.38 -2.39 -0.02 1.56 16 30 H 0.05 2.12 6.10 -2.39 -0.01 2.11 16 31 H 0.06 1.91 7.21 -2.38 -0.02 1.90 16 32 H 0.08 3.10 8.06 -2.39 -0.02 3.08 16 33 H 0.08 3.45 7.28 -2.39 -0.02 3.43 16 34 H 0.27 13.83 8.32 -92.71 -0.77 13.06 16 35 H 0.10 5.15 5.45 -2.39 -0.01 5.14 16 36 H 0.06 2.93 7.36 -2.39 -0.02 2.92 16 37 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 42 H 0.11 3.31 7.13 -2.91 -0.02 3.29 16 43 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 44 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 45 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 46 H 0.12 2.97 7.95 -2.91 -0.02 2.95 16 Total: -1.00 -63.36 372.27 5.92 -57.44 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: 0.94 Total: 32.21 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 5.85 Total: -8.94 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: -1.34 Total: -73.10 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -1.56 Total: -51.07 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -63.36 5.92 -57.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457186243.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.774 kcal (2) G-P(sol) polarization free energy of solvation -63.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds