Wall clock time and date at job start Fri Apr 10 2020 21:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46802 * 2 1 4 4 H 1.09001 * 109.47234 * 56.87463 * 3 2 1 5 5 C 1.53001 * 109.46643 * 176.87294 * 3 2 1 6 6 O 1.42904 * 109.46798 * 181.99490 * 5 3 2 7 7 N 1.46500 * 109.47190 * 296.87585 * 3 2 1 8 8 C 1.46499 * 120.00179 * 116.26559 * 7 3 2 9 9 C 1.50702 * 109.46869 * 84.39650 * 8 7 3 10 10 C 1.38238 * 120.00057 * 275.33399 * 9 8 7 11 11 C 1.38238 * 120.00100 * 179.77082 * 10 9 8 12 12 C 1.38234 * 119.99568 * 0.50353 * 11 10 9 13 13 C 1.38231 * 120.00446 * 359.74773 * 12 11 10 14 14 C 1.38233 * 119.99948 * 0.02562 * 13 12 11 15 15 C 1.34780 * 119.99516 * 296.26158 * 7 3 2 16 16 O 1.21276 * 120.00414 * 4.90065 * 15 7 3 17 17 C 1.50699 * 119.99579 * 184.89693 * 15 7 3 18 18 C 1.52999 * 109.47091 * 185.61150 * 17 15 7 19 19 C 1.50699 * 109.47091 * 179.97438 * 18 17 15 20 20 H 1.07992 * 120.00293 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99957 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99760 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00025 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47333 * 60.00519 * 23 21 19 25 25 H 1.48505 * 109.47120 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47377 * 300.00166 * 23 21 19 27 27 H 1.08997 * 109.47637 * 59.99943 * 1 2 3 28 28 H 1.09001 * 109.46885 * 299.99557 * 1 2 3 29 29 H 1.09004 * 109.46868 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47202 * 120.00360 * 2 1 3 31 31 H 1.09001 * 109.46885 * 240.00443 * 2 1 3 32 32 H 1.08997 * 109.47168 * 301.99178 * 5 3 2 33 33 H 1.09001 * 109.47329 * 62.00056 * 5 3 2 34 34 H 0.96698 * 114.00161 * 180.02562 * 6 5 3 35 35 H 1.08993 * 109.47126 * 204.39551 * 8 7 3 36 36 H 1.08996 * 109.46900 * 324.40247 * 8 7 3 37 37 H 1.08010 * 119.99796 * 359.97438 * 10 9 8 38 38 H 1.08004 * 120.00010 * 180.22966 * 11 10 9 39 39 H 1.08007 * 119.99382 * 179.72615 * 12 11 10 40 40 H 1.07996 * 120.00249 * 179.97438 * 13 12 11 41 41 H 1.08000 * 120.00106 * 179.97438 * 14 13 12 42 42 H 1.09001 * 109.47167 * 305.61376 * 17 15 7 43 43 H 1.09003 * 109.47121 * 65.61209 * 17 15 7 44 44 H 1.09001 * 109.47300 * 300.00145 * 18 17 15 45 45 H 1.08994 * 109.47244 * 59.99899 * 18 17 15 46 46 H 0.97008 * 119.99716 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6315 1.9723 0.8606 5 6 3.5679 1.4432 0.0787 6 8 4.0418 2.7906 0.1255 7 7 1.6140 2.1111 -1.2320 8 6 0.7004 3.2544 -1.1668 9 6 1.4887 4.5133 -0.9120 10 6 1.8246 4.8687 0.3810 11 6 2.5517 6.0210 0.6144 12 6 2.9340 6.8233 -0.4444 13 6 2.5936 6.4707 -1.7370 14 6 1.8706 5.3160 -1.9707 15 6 2.0628 1.6742 -2.4255 16 8 2.7470 0.6748 -2.4872 17 6 1.7142 2.4276 -3.6832 18 6 2.2237 1.6523 -4.8999 19 6 1.8746 2.4054 -6.1576 20 1 1.3422 3.3430 -6.0955 21 6 2.2349 1.8975 -7.3878 22 7 2.8828 0.7555 -7.4635 23 14 1.8028 2.8313 -8.9468 24 1 2.4386 4.1729 -8.9126 25 1 2.2972 2.0788 -10.1277 26 1 0.3286 2.9844 -9.0397 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8857 0.9149 0.9775 33 1 3.9772 0.9445 -0.7999 34 1 5.0044 2.8674 0.1760 35 1 0.1650 3.3460 -2.1117 36 1 -0.0139 3.1030 -0.3576 37 1 1.5217 4.2443 1.2086 38 1 2.8173 6.2967 1.6243 39 1 3.4983 7.7259 -0.2617 40 1 2.8919 7.0977 -2.5641 41 1 1.6043 5.0407 -2.9805 42 1 0.6322 2.5403 -3.7512 43 1 2.1812 3.4122 -3.6581 44 1 3.3057 1.5396 -4.8319 45 1 1.7568 0.6678 -4.9249 46 1 3.1366 0.3983 -8.3289 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487002380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:37:36 Heat of formation + Delta-G solvation = -70.487605 kcal Electronic energy + Delta-G solvation = -26306.938228 eV Core-core repulsion = 22775.188077 eV Total energy + Delta-G solvation = -3531.750152 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.19301 -38.72767 -36.76728 -35.39259 -33.89430 -33.18212 -31.02224 -30.80596 -30.56844 -28.63320 -26.07561 -25.36743 -23.30306 -22.64711 -22.05702 -21.27843 -20.55996 -18.19107 -17.13701 -17.04998 -16.49123 -16.24405 -15.62357 -15.49036 -14.77073 -14.72780 -14.42147 -14.15896 -13.94569 -13.71336 -13.29059 -13.11364 -13.07726 -12.72636 -12.28436 -12.24462 -12.11071 -11.97774 -11.80724 -11.35422 -11.19592 -11.11249 -10.94467 -10.92461 -10.83254 -10.62717 -10.52466 -9.94086 -9.82597 -9.53919 -9.10945 -8.79804 -8.70648 -8.59884 -8.31843 -8.25512 -5.93966 -3.98000 1.47383 1.60733 3.27392 3.35296 3.35610 3.40401 3.42400 4.03515 4.25490 4.48888 4.83958 4.89746 5.04610 5.12987 5.14133 5.20231 5.28005 5.33513 5.38007 5.41050 5.47635 5.53009 5.61015 5.69066 5.72442 5.78172 5.84918 5.98745 6.03896 6.13170 6.18824 6.22711 6.24970 6.33055 6.43559 6.61147 6.67136 6.74463 6.90079 7.00240 7.17455 7.75332 7.76424 7.84835 7.89964 8.09803 8.41664 8.83531 9.10346 9.65290 11.16939 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012102 B = 0.004921 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.026491 B = 5688.787856 C = 7153.864162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.143 4.143 3 C 0.159 3.841 4 H 0.081 0.919 5 C 0.054 3.946 6 O -0.559 6.559 7 N -0.604 5.604 8 C 0.150 3.850 9 C -0.095 4.095 10 C -0.083 4.083 11 C -0.124 4.124 12 C -0.122 4.122 13 C -0.122 4.122 14 C -0.103 4.103 15 C 0.520 3.480 16 O -0.533 6.533 17 C -0.133 4.133 18 C 0.040 3.960 19 C -0.525 4.525 20 H 0.054 0.946 21 C 0.059 3.941 22 N -0.890 5.890 23 Si 0.891 3.109 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 H 0.057 0.943 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.371 0.629 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.127 0.873 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.023 0.977 45 H 0.020 0.980 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.951 7.160 19.789 21.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.181 4.181 3 C 0.056 3.944 4 H 0.099 0.901 5 C -0.024 4.024 6 O -0.363 6.363 7 N -0.337 5.337 8 C 0.027 3.973 9 C -0.096 4.096 10 C -0.101 4.101 11 C -0.142 4.142 12 C -0.140 4.140 13 C -0.140 4.140 14 C -0.122 4.122 15 C 0.311 3.689 16 O -0.409 6.409 17 C -0.173 4.173 18 C 0.002 3.998 19 C -0.564 4.564 20 H 0.072 0.928 21 C -0.143 4.143 22 N -0.529 5.529 23 Si 0.719 3.281 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.217 0.783 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.145 0.855 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.041 0.959 45 H 0.039 0.961 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.161 6.580 19.581 20.897 hybrid contribution 0.526 0.438 -0.753 1.018 sum -2.635 7.018 18.828 20.265 Atomic orbital electron populations 1.21671 0.95401 1.01529 1.01538 1.21908 0.96480 0.95953 1.03748 1.20939 0.92774 0.93364 0.87359 0.90083 1.22647 0.94975 0.84018 1.00797 1.86538 1.26032 1.26223 1.97533 1.48034 1.48596 1.31316 1.05794 1.20491 0.90508 0.82874 1.03438 1.20155 0.99893 0.96051 0.93489 1.20776 0.97584 0.95885 0.95882 1.20973 0.99194 0.95530 0.98479 1.21061 1.00293 0.99621 0.93033 1.21105 0.98875 0.97295 0.96771 1.21249 0.97537 0.94363 0.99009 1.21400 0.78323 0.84574 0.84632 1.90572 1.38132 1.25709 1.86468 1.22010 1.01621 1.00473 0.93154 1.18869 0.97169 0.94936 0.88809 1.21176 1.37092 1.06913 0.91198 0.92765 1.25005 0.95202 0.94979 0.99068 1.69990 1.39224 1.18903 1.24758 0.86685 0.78715 0.79904 0.82816 1.20265 1.21312 1.20265 0.92368 0.93344 0.92784 0.91676 0.89112 0.94028 0.90940 0.78324 0.88938 0.90359 0.87129 0.86890 0.86812 0.86353 0.85548 0.90740 0.89980 0.95853 0.96113 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.78 37.16 0.36 -1.26 16 2 C -0.14 -1.81 5.32 -26.73 -0.14 -1.95 16 3 C 0.16 2.08 2.36 -67.93 -0.16 1.92 16 4 H 0.08 0.92 7.52 -51.93 -0.39 0.53 16 5 C 0.05 0.73 6.26 37.16 0.23 0.96 16 6 O -0.56 -7.43 12.70 -35.23 -0.45 -7.87 16 7 N -0.60 -8.90 1.68 -167.47 -0.28 -9.18 16 8 C 0.15 1.86 5.34 -5.19 -0.03 1.84 16 9 C -0.09 -1.22 5.46 -104.62 -0.57 -1.79 16 10 C -0.08 -0.97 8.87 -39.58 -0.35 -1.33 16 11 C -0.12 -1.39 10.05 -39.58 -0.40 -1.78 16 12 C -0.12 -1.40 10.05 -39.59 -0.40 -1.80 16 13 C -0.12 -1.55 10.05 -39.59 -0.40 -1.95 16 14 C -0.10 -1.42 9.10 -39.58 -0.36 -1.78 16 15 C 0.52 10.03 7.06 -10.98 -0.08 9.95 16 16 O -0.53 -11.99 12.18 5.56 0.07 -11.92 16 17 C -0.13 -2.75 4.37 -27.88 -0.12 -2.87 16 18 C 0.04 1.07 4.28 -27.88 -0.12 0.95 16 19 C -0.53 -14.88 9.11 -34.44 -0.31 -15.19 16 20 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -27.45 13.29 55.43 0.74 -26.72 16 23 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H 0.06 0.73 7.69 -51.93 -0.40 0.33 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.47 6.21 -51.93 -0.32 1.15 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 1.22 6.01 -51.93 -0.31 0.90 16 34 H 0.37 3.73 9.12 45.56 0.42 4.15 16 35 H 0.09 1.14 6.01 -51.93 -0.31 0.83 16 36 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 37 H 0.11 1.17 7.69 -52.48 -0.40 0.76 16 38 H 0.11 1.04 8.06 -52.48 -0.42 0.61 16 39 H 0.11 1.06 8.06 -52.48 -0.42 0.64 16 40 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.13 1.79 6.31 -52.49 -0.33 1.46 16 42 H 0.07 1.40 6.94 -51.93 -0.36 1.04 16 43 H 0.08 1.63 5.73 -51.93 -0.30 1.33 16 44 H 0.02 0.69 8.04 -51.93 -0.42 0.27 16 45 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 369.87 15.07 5.57 5.57 Total: -1.00 -33.76 369.87 -8.78 -42.55 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -6.47 Total: 5.34 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -2.94 Total: -14.45 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.46 Total: -35.90 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.38 Total: -19.79 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.76 -8.78 -42.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487002380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.941 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds