Wall clock time and date at job start Fri Apr 10 2020 21:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46802 * 2 1 4 4 H 1.09001 * 109.47234 * 56.87463 * 3 2 1 5 5 C 1.53001 * 109.46643 * 176.87294 * 3 2 1 6 6 O 1.42904 * 109.46798 * 181.99490 * 5 3 2 7 7 N 1.46500 * 109.47190 * 296.87585 * 3 2 1 8 8 C 1.46499 * 120.00179 * 116.26559 * 7 3 2 9 9 C 1.50702 * 109.46869 * 84.39650 * 8 7 3 10 10 C 1.38238 * 120.00057 * 275.33399 * 9 8 7 11 11 C 1.38238 * 120.00100 * 179.77082 * 10 9 8 12 12 C 1.38234 * 119.99568 * 0.50353 * 11 10 9 13 13 C 1.38231 * 120.00446 * 359.74773 * 12 11 10 14 14 C 1.38233 * 119.99948 * 0.02562 * 13 12 11 15 15 C 1.34780 * 119.99516 * 296.26158 * 7 3 2 16 16 O 1.21276 * 120.00414 * 4.90065 * 15 7 3 17 17 C 1.50699 * 119.99579 * 184.89693 * 15 7 3 18 18 C 1.52999 * 109.47091 * 185.61150 * 17 15 7 19 19 C 1.50699 * 109.47091 * 179.97438 * 18 17 15 20 20 H 1.07992 * 120.00293 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99957 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99760 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00025 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47333 * 60.00519 * 23 21 19 25 25 H 1.48505 * 109.47120 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47377 * 300.00166 * 23 21 19 27 27 H 1.08997 * 109.47637 * 59.99943 * 1 2 3 28 28 H 1.09001 * 109.46885 * 299.99557 * 1 2 3 29 29 H 1.09004 * 109.46868 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47202 * 120.00360 * 2 1 3 31 31 H 1.09001 * 109.46885 * 240.00443 * 2 1 3 32 32 H 1.08997 * 109.47168 * 301.99178 * 5 3 2 33 33 H 1.09001 * 109.47329 * 62.00056 * 5 3 2 34 34 H 0.96698 * 114.00161 * 180.02562 * 6 5 3 35 35 H 1.08993 * 109.47126 * 204.39551 * 8 7 3 36 36 H 1.08996 * 109.46900 * 324.40247 * 8 7 3 37 37 H 1.08010 * 119.99796 * 359.97438 * 10 9 8 38 38 H 1.08004 * 120.00010 * 180.22966 * 11 10 9 39 39 H 1.08007 * 119.99382 * 179.72615 * 12 11 10 40 40 H 1.07996 * 120.00249 * 179.97438 * 13 12 11 41 41 H 1.08000 * 120.00106 * 179.97438 * 14 13 12 42 42 H 1.09001 * 109.47167 * 305.61376 * 17 15 7 43 43 H 1.09003 * 109.47121 * 65.61209 * 17 15 7 44 44 H 1.09001 * 109.47300 * 300.00145 * 18 17 15 45 45 H 1.08994 * 109.47244 * 59.99899 * 18 17 15 46 46 H 0.97008 * 119.99716 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6315 1.9723 0.8606 5 6 3.5679 1.4432 0.0787 6 8 4.0418 2.7906 0.1255 7 7 1.6140 2.1111 -1.2320 8 6 0.7004 3.2544 -1.1668 9 6 1.4887 4.5133 -0.9120 10 6 1.8246 4.8687 0.3810 11 6 2.5517 6.0210 0.6144 12 6 2.9340 6.8233 -0.4444 13 6 2.5936 6.4707 -1.7370 14 6 1.8706 5.3160 -1.9707 15 6 2.0628 1.6742 -2.4255 16 8 2.7470 0.6748 -2.4872 17 6 1.7142 2.4276 -3.6832 18 6 2.2237 1.6523 -4.8999 19 6 1.8746 2.4054 -6.1576 20 1 1.3422 3.3430 -6.0955 21 6 2.2349 1.8975 -7.3878 22 7 2.8828 0.7555 -7.4635 23 14 1.8028 2.8313 -8.9468 24 1 2.4386 4.1729 -8.9126 25 1 2.2972 2.0788 -10.1277 26 1 0.3286 2.9844 -9.0397 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8857 0.9149 0.9775 33 1 3.9772 0.9445 -0.7999 34 1 5.0044 2.8674 0.1760 35 1 0.1650 3.3460 -2.1117 36 1 -0.0139 3.1030 -0.3576 37 1 1.5217 4.2443 1.2086 38 1 2.8173 6.2967 1.6243 39 1 3.4983 7.7259 -0.2617 40 1 2.8919 7.0977 -2.5641 41 1 1.6043 5.0407 -2.9805 42 1 0.6322 2.5403 -3.7512 43 1 2.1812 3.4122 -3.6581 44 1 3.3057 1.5396 -4.8319 45 1 1.7568 0.6678 -4.9249 46 1 3.1366 0.3983 -8.3289 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487002380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:37:35 Heat of formation + Delta-G solvation = -91.644839 kcal Electronic energy + Delta-G solvation = -26307.855675 eV Core-core repulsion = 22775.188077 eV Total energy + Delta-G solvation = -3532.667598 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.46886 -39.74613 -37.99658 -36.55940 -35.64034 -34.65028 -32.80690 -31.86388 -31.61486 -29.72938 -27.79563 -26.68694 -24.60298 -23.83420 -23.19730 -22.41746 -21.94385 -19.65909 -18.66344 -18.11402 -17.88318 -17.45284 -17.13749 -16.62403 -16.43812 -15.89915 -15.72352 -15.36770 -15.18651 -14.94182 -14.45289 -14.26505 -14.16469 -14.09920 -13.80406 -13.66823 -13.35251 -13.10858 -13.05446 -12.81720 -12.75046 -12.51228 -12.37335 -12.09116 -11.97497 -11.92763 -11.76210 -11.64226 -11.48875 -11.29513 -10.96683 -10.56035 -10.24570 -9.65569 -9.63027 -9.44039 -8.18029 -6.31930 0.53887 0.68318 1.40654 1.45101 1.52752 1.77746 2.14144 2.42795 3.07489 3.14734 3.28313 3.79641 3.93540 3.99032 4.14168 4.19725 4.28055 4.32174 4.34791 4.37913 4.42824 4.45983 4.50610 4.56732 4.62974 4.70082 4.81308 4.86388 4.91314 4.95440 5.06349 5.10677 5.24821 5.26743 5.30356 5.40610 5.47920 5.62856 5.71328 5.71906 5.76831 5.84374 5.89910 6.18028 6.27354 6.48645 6.85360 6.86294 7.36246 7.39314 8.94359 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012102 B = 0.004921 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.026491 B = 5688.787856 C = 7153.864162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.140 4.140 3 C 0.156 3.844 4 H 0.114 0.886 5 C 0.058 3.942 6 O -0.568 6.568 7 N -0.587 5.587 8 C 0.144 3.856 9 C -0.103 4.103 10 C -0.083 4.083 11 C -0.124 4.124 12 C -0.124 4.124 13 C -0.138 4.138 14 C -0.127 4.127 15 C 0.518 3.482 16 O -0.575 6.575 17 C -0.121 4.121 18 C 0.050 3.950 19 C -0.543 4.543 20 H 0.072 0.928 21 C -0.003 4.003 22 N -0.936 5.936 23 Si 0.971 3.029 24 H -0.264 1.264 25 H -0.286 1.286 26 H -0.262 1.262 27 H 0.040 0.960 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.030 0.970 34 H 0.384 0.616 35 H 0.089 0.911 36 H 0.113 0.887 37 H 0.130 0.870 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.123 0.877 41 H 0.112 0.888 42 H 0.095 0.905 43 H 0.091 0.909 44 H -0.022 1.022 45 H -0.018 1.018 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.264 9.383 22.009 24.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.179 4.179 3 C 0.053 3.947 4 H 0.132 0.868 5 C -0.020 4.020 6 O -0.374 6.374 7 N -0.319 5.319 8 C 0.022 3.978 9 C -0.104 4.104 10 C -0.102 4.102 11 C -0.142 4.142 12 C -0.143 4.143 13 C -0.156 4.156 14 C -0.145 4.145 15 C 0.308 3.692 16 O -0.455 6.455 17 C -0.160 4.160 18 C 0.013 3.987 19 C -0.580 4.580 20 H 0.090 0.910 21 C -0.201 4.201 22 N -0.576 5.576 23 Si 0.794 3.206 24 H -0.189 1.189 25 H -0.212 1.212 26 H -0.186 1.186 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.232 0.768 35 H 0.107 0.893 36 H 0.131 0.869 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.153 0.847 40 H 0.141 0.859 41 H 0.130 0.870 42 H 0.113 0.887 43 H 0.109 0.891 44 H -0.003 1.003 45 H 0.000 1.000 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.496 8.845 21.847 23.994 hybrid contribution 0.980 -0.234 -1.353 1.687 sum -3.515 8.611 20.494 22.506 Atomic orbital electron populations 1.21652 0.94103 1.01987 1.02026 1.21867 0.97580 0.95561 1.02843 1.21197 0.92706 0.93749 0.87016 0.86841 1.22553 0.95189 0.84101 1.00206 1.86488 1.27432 1.25959 1.97486 1.47911 1.47596 1.31426 1.04938 1.20755 0.90452 0.81874 1.04759 1.20160 1.00361 0.95959 0.93924 1.21006 0.97179 0.96288 0.95717 1.21316 0.98299 0.95013 0.99595 1.21358 0.99956 1.00413 0.92526 1.21291 0.99132 0.97275 0.97879 1.21298 0.98887 0.95528 0.98798 1.21051 0.78402 0.84051 0.85723 1.90573 1.40204 1.27460 1.87234 1.21746 1.02615 0.99886 0.91773 1.18610 0.94089 0.94032 0.92014 1.21641 1.37031 1.07536 0.91823 0.91008 1.26088 0.94790 0.95858 1.03347 1.70172 1.40616 1.21022 1.25816 0.85423 0.79178 0.78528 0.77433 1.18856 1.21182 1.18619 0.94128 0.90404 0.92528 0.89198 0.93399 0.91168 0.95138 0.76841 0.89285 0.86919 0.85237 0.84398 0.84701 0.85868 0.87001 0.88677 0.89077 1.00320 1.00000 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.78 71.98 0.70 -2.18 16 2 C -0.14 -3.40 5.32 30.59 0.16 -3.24 16 3 C 0.16 3.77 2.36 44.99 0.11 3.88 16 4 H 0.11 2.08 7.52 -2.39 -0.02 2.06 16 5 C 0.06 1.51 6.26 71.98 0.45 1.96 16 6 O -0.57 -14.13 12.70 -148.98 -1.89 -16.02 16 7 N -0.59 -16.89 1.68 -802.15 -1.35 -18.24 16 8 C 0.14 3.28 5.34 85.63 0.46 3.74 16 9 C -0.10 -2.44 5.46 -19.86 -0.11 -2.55 16 10 C -0.08 -1.69 8.87 22.27 0.20 -1.49 16 11 C -0.12 -2.36 10.05 22.27 0.22 -2.14 16 12 C -0.12 -2.55 10.05 22.27 0.22 -2.33 16 13 C -0.14 -3.35 10.05 22.27 0.22 -3.12 16 14 C -0.13 -3.39 9.10 22.27 0.20 -3.19 16 15 C 0.52 20.78 7.06 87.66 0.62 21.40 16 16 O -0.57 -27.76 12.18 -3.02 -0.04 -27.80 16 17 C -0.12 -5.18 4.37 29.85 0.13 -5.05 16 18 C 0.05 2.88 4.28 29.85 0.13 3.01 16 19 C -0.54 -31.58 9.11 25.60 0.23 -31.34 16 20 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 21 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 22 N -0.94 -60.12 13.29 21.45 0.28 -59.83 16 23 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 24 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 25 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 26 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 27 H 0.04 0.97 7.69 -2.39 -0.02 0.95 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.05 1.61 6.21 -2.39 -0.01 1.59 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 33 H 0.03 1.07 6.01 -2.39 -0.01 1.05 16 34 H 0.38 7.23 9.12 -74.06 -0.68 6.56 16 35 H 0.09 2.10 6.01 -2.39 -0.01 2.08 16 36 H 0.11 1.83 8.05 -2.39 -0.02 1.82 16 37 H 0.13 2.11 7.69 -2.91 -0.02 2.08 16 38 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 39 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 40 H 0.12 2.73 8.06 -2.91 -0.02 2.71 16 41 H 0.11 3.22 6.31 -2.91 -0.02 3.21 16 42 H 0.10 3.63 6.94 -2.39 -0.02 3.62 16 43 H 0.09 3.73 5.73 -2.39 -0.01 3.72 16 44 H -0.02 -1.41 8.04 -2.39 -0.02 -1.43 16 45 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 46 H 0.26 15.81 8.31 -92.70 -0.77 15.04 16 Total: -1.00 -78.07 369.87 3.75 -74.32 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.30 Total: 22.99 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: 4.42 Total: -22.39 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -1.06 Total: -78.07 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -1.93 Total: -43.82 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -78.07 3.75 -74.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487002380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.322 kcal (2) G-P(sol) polarization free energy of solvation -78.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds