Wall clock time and date at job start Fri Apr 10 2020 21:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47191 * 2 1 4 4 N 1.46501 * 109.46689 * 179.97438 * 3 2 1 5 5 C 1.37098 * 120.00470 * 263.24896 * 4 3 2 6 6 H 1.07996 * 120.00214 * 188.09650 * 5 4 3 7 7 C 1.38955 * 119.99538 * 8.09618 * 5 4 3 8 8 N 1.31406 * 120.00434 * 26.09686 * 7 5 4 9 9 Si 1.86803 * 119.99793 * 206.09897 * 7 5 4 10 10 H 1.48491 * 109.47397 * 84.98412 * 9 7 5 11 11 H 1.48500 * 109.46867 * 204.98781 * 9 7 5 12 12 H 1.48503 * 109.46921 * 324.98602 * 9 7 5 13 13 C 1.34779 * 119.99883 * 83.25337 * 4 3 2 14 14 O 1.21296 * 119.99874 * 359.97438 * 13 4 3 15 15 C 1.50702 * 120.00039 * 179.97438 * 13 4 3 16 16 O 1.42906 * 109.46821 * 180.02562 * 15 13 4 17 17 C 1.35901 * 116.99430 * 180.02562 * 16 15 13 18 18 C 1.38733 * 120.05199 * 180.02562 * 17 16 15 19 19 C 1.38144 * 119.94405 * 180.02562 * 18 17 16 20 20 C 1.38261 * 120.05571 * 0.02562 * 19 18 17 21 21 C 1.50698 * 119.94588 * 179.97438 * 20 19 18 22 22 C 1.52999 * 109.47269 * 239.99735 * 21 20 19 23 23 C 1.53002 * 109.47389 * 119.99865 * 21 20 19 24 24 C 1.38266 * 120.11121 * 0.25111 * 20 19 18 25 25 C 1.38143 * 120.05718 * 359.45559 * 24 20 19 26 26 H 1.09000 * 109.47153 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46921 * 300.00450 * 1 2 3 28 28 H 1.09000 * 109.46830 * 59.99736 * 1 2 3 29 29 H 1.09002 * 109.46959 * 239.99940 * 2 1 3 30 30 H 1.09000 * 109.46830 * 120.00264 * 2 1 3 31 31 H 1.08995 * 109.46861 * 60.00220 * 3 2 1 32 32 H 1.08997 * 109.47011 * 299.99614 * 3 2 1 33 33 H 0.96992 * 120.00701 * 180.02562 * 8 7 5 34 34 H 1.08994 * 109.46992 * 59.99876 * 15 13 4 35 35 H 1.08998 * 109.47127 * 299.99679 * 15 13 4 36 36 H 1.08003 * 120.02628 * 359.97438 * 18 17 16 37 37 H 1.08002 * 119.97055 * 180.02562 * 19 18 17 38 38 H 1.08998 * 109.46931 * 0.02562 * 21 20 19 39 39 H 1.09009 * 109.46983 * 59.99976 * 22 21 20 40 40 H 1.09000 * 109.47290 * 179.97438 * 22 21 20 41 41 H 1.08998 * 109.47503 * 300.00089 * 22 21 20 42 42 H 1.09002 * 109.47248 * 59.99985 * 23 21 20 43 43 H 1.08999 * 109.47632 * 180.02562 * 23 21 20 44 44 H 1.09004 * 109.47373 * 300.00220 * 23 21 20 45 45 H 1.08003 * 119.97522 * 179.70544 * 24 20 19 46 46 H 1.08004 * 120.03177 * 180.24764 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1902 1.5820 1.1799 6 1 5.2621 1.7133 1.1694 7 6 3.5053 1.5547 2.3886 8 7 2.3620 0.9137 2.4817 9 14 4.2099 2.4294 3.8813 10 1 3.8117 3.8596 3.8507 11 1 3.6868 1.7963 5.1186 12 1 5.6912 2.3275 3.8612 13 6 4.1794 1.3050 -1.1582 14 8 3.5733 1.1810 -2.2016 15 6 5.6864 1.3055 -1.1577 16 8 6.1632 1.1474 -2.4956 17 6 7.5106 1.1264 -2.6718 18 6 8.0426 0.9766 -3.9443 19 6 9.4125 0.9550 -4.1208 20 6 10.2533 1.0819 -3.0306 21 6 11.7474 1.0574 -3.2259 22 6 12.3459 -0.1084 -2.4363 23 6 12.3486 2.3731 -2.7274 24 6 9.7256 1.2256 -1.7607 25 6 8.3564 1.2539 -1.5795 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 1.8837 0.8949 3.3253 34 1 6.0498 0.4824 -0.5425 35 1 6.0494 2.2499 -0.7523 36 1 7.3862 0.8761 -4.7961 37 1 9.8271 0.8388 -5.1113 38 1 11.9733 0.9334 -4.2850 39 1 11.9176 -1.0457 -2.7915 40 1 13.4265 -0.1264 -2.5779 41 1 12.1200 0.0160 -1.3773 42 1 12.1227 2.4976 -1.6683 43 1 13.4292 2.3556 -2.8691 44 1 11.9222 3.2037 -3.2899 45 1 10.3844 1.3198 -0.9101 46 1 7.9446 1.3702 -0.5878 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000498097723.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:37:41 Heat of formation + Delta-G solvation = -56.037481 kcal Electronic energy + Delta-G solvation = -24891.688070 eV Core-core repulsion = 21360.564523 eV Total energy + Delta-G solvation = -3531.123547 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.05363 -38.74155 -37.57139 -35.22084 -34.60553 -32.44459 -31.58258 -30.90270 -29.24674 -27.64090 -27.27254 -25.65929 -24.26017 -23.20620 -22.18540 -20.55821 -19.99094 -19.22608 -17.97991 -17.30912 -15.92393 -15.82959 -15.60238 -15.24739 -14.49951 -14.47565 -14.21436 -14.06581 -13.75072 -13.56174 -13.41288 -13.22383 -13.19211 -12.63982 -12.49135 -12.30796 -12.16580 -11.91837 -11.67156 -11.44856 -11.27729 -11.16524 -10.99207 -10.84248 -10.81263 -10.54312 -10.53266 -10.45069 -10.34933 -10.30322 -9.54609 -8.93868 -8.86017 -8.44312 -7.90100 -7.82138 -6.52816 -3.98711 1.48703 1.58843 3.02120 3.14184 3.14981 3.41094 3.74475 3.89761 4.00540 4.63330 4.71040 4.84803 4.87899 5.03034 5.08675 5.14097 5.35197 5.43637 5.47226 5.53462 5.64252 5.68701 5.79986 5.81335 5.84244 5.87437 5.93292 6.09960 6.10239 6.12920 6.15189 6.18014 6.39547 6.45572 6.57324 6.63143 6.73404 6.83728 6.93558 6.95043 7.00763 7.20019 7.37725 7.60320 7.70668 7.77833 8.30489 8.93743 9.39168 9.80817 10.45806 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.016743 B = 0.003332 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.973991 B = 8402.082360 C = 9710.168643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 C 0.141 3.859 4 N -0.433 5.433 5 C -0.351 4.351 6 H 0.098 0.902 7 C 0.044 3.956 8 N -0.843 5.843 9 Si 0.914 3.086 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.452 3.548 14 O -0.590 6.590 15 C 0.061 3.939 16 O -0.291 6.291 17 C 0.138 3.862 18 C -0.154 4.154 19 C -0.080 4.080 20 C -0.129 4.129 21 C -0.049 4.049 22 C -0.144 4.144 23 C -0.144 4.144 24 C -0.073 4.073 25 C -0.210 4.210 26 H 0.039 0.961 27 H 0.051 0.949 28 H 0.038 0.962 29 H 0.036 0.964 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.038 0.962 33 H 0.271 0.729 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.073 0.927 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.120 0.880 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.758 0.433 -4.564 14.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.159 4.159 3 C 0.018 3.982 4 N -0.152 5.152 5 C -0.478 4.478 6 H 0.116 0.884 7 C -0.163 4.163 8 N -0.480 5.480 9 Si 0.741 3.259 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.239 3.761 14 O -0.476 6.476 15 C -0.017 4.017 16 O -0.203 6.203 17 C 0.091 3.909 18 C -0.173 4.173 19 C -0.098 4.098 20 C -0.129 4.129 21 C -0.068 4.068 22 C -0.202 4.202 23 C -0.202 4.202 24 C -0.091 4.091 25 C -0.229 4.229 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.147 0.853 37 H 0.141 0.859 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.138 0.862 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 13.117 0.311 -5.036 14.054 hybrid contribution 0.354 0.398 1.254 1.363 sum 13.472 0.709 -3.781 14.010 Atomic orbital electron populations 1.21584 0.97419 0.99924 1.00451 1.21746 0.93910 0.98314 1.01963 1.21318 0.79258 0.97075 1.00499 1.43722 1.05716 1.60816 1.04947 1.19608 0.93529 1.51566 0.83097 0.88394 1.25162 0.96327 0.95886 0.98900 1.70143 1.16264 1.34749 1.26837 0.86152 0.79402 0.79990 0.80403 1.20106 1.20878 1.19486 1.19377 0.87572 0.84431 0.84673 1.90573 1.69443 1.55880 1.31716 1.22453 0.95600 1.02242 0.81401 1.86166 1.17657 1.86627 1.29851 1.19198 0.83070 0.94513 0.94100 1.20420 0.95050 1.06601 0.95219 1.20778 0.92072 0.98664 0.98246 1.19660 0.94958 1.04957 0.93325 1.20004 0.90919 0.95563 1.00290 1.21869 1.00024 0.97914 1.00359 1.21868 1.00012 0.96770 1.01501 1.20705 0.94063 0.97778 0.96591 1.21366 0.94248 1.08480 0.98761 0.94156 0.92962 0.94322 0.94527 0.88866 0.88532 0.94368 0.91837 0.90034 0.90364 0.85281 0.85865 0.90813 0.92557 0.92727 0.92492 0.92504 0.92728 0.92572 0.86208 0.85168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.91 37.16 0.37 -2.20 16 2 C -0.12 -2.75 5.74 -26.73 -0.15 -2.90 16 3 C 0.14 3.40 4.52 -4.04 -0.02 3.38 16 4 N -0.43 -10.79 2.64 -114.81 -0.30 -11.10 16 5 C -0.35 -8.47 9.25 -14.93 -0.14 -8.61 16 6 H 0.10 2.20 6.47 -52.49 -0.34 1.86 16 7 C 0.04 1.03 4.88 -17.47 -0.09 0.95 16 8 N -0.84 -20.27 8.72 55.50 0.48 -19.78 16 9 Si 0.91 18.32 29.63 -169.99 -5.04 13.29 16 10 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 11 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 12 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 13 C 0.45 11.26 7.66 -10.98 -0.08 11.17 16 14 O -0.59 -16.43 16.19 -14.37 -0.23 -16.66 16 15 C 0.06 1.26 3.61 36.01 0.13 1.39 16 16 O -0.29 -6.06 9.67 -39.34 -0.38 -6.44 16 17 C 0.14 2.38 6.69 -39.22 -0.26 2.12 16 18 C -0.15 -2.32 9.99 -39.43 -0.39 -2.72 16 19 C -0.08 -0.99 9.66 -39.61 -0.38 -1.37 16 20 C -0.13 -1.54 4.78 -104.60 -0.50 -2.04 16 21 C -0.05 -0.46 3.09 -91.77 -0.28 -0.74 16 22 C -0.14 -1.23 9.00 37.16 0.33 -0.90 16 23 C -0.14 -1.22 9.01 37.16 0.33 -0.89 16 24 C -0.07 -0.95 8.70 -39.61 -0.34 -1.29 16 25 C -0.21 -3.19 9.04 -39.43 -0.36 -3.55 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.09 2.29 6.42 -51.93 -0.33 1.95 16 31 H 0.10 2.37 5.81 -51.93 -0.30 2.07 16 32 H 0.04 0.93 7.63 -51.93 -0.40 0.53 16 33 H 0.27 6.18 8.31 -40.82 -0.34 5.84 16 34 H 0.08 1.59 7.53 -51.93 -0.39 1.20 16 35 H 0.08 1.48 7.32 -51.93 -0.38 1.10 16 36 H 0.13 1.85 8.06 -52.48 -0.42 1.43 16 37 H 0.12 1.21 7.94 -52.49 -0.42 0.79 16 38 H 0.07 0.62 7.87 -51.93 -0.41 0.21 16 39 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.49 7.37 -51.93 -0.38 0.11 16 42 H 0.06 0.49 7.40 -51.93 -0.38 0.10 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.12 1.31 7.09 -52.48 -0.37 0.93 16 46 H 0.13 1.91 6.30 -52.48 -0.33 1.58 16 LS Contribution 370.35 15.07 5.58 5.58 Total: -1.00 -28.28 370.35 -9.10 -37.38 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -7.38 Total: 5.92 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -1.84 Total: -8.20 kcal Atomic # 7 Polarization: -31.06 SS G_CDS: 0.18 Total: -30.88 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.61 Total: -23.10 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.04 Total: 13.29 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.28 -9.10 -37.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000498097723.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.657 kcal (2) G-P(sol) polarization free energy of solvation -28.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds